Cloning, sequencing and expression of the cDNA of endoxylanase B from Penicillium purpurogenum

Gene

Volumn 187, Issue 2, 1997, Pages 247-251

  Díaz, René ^a   Sapag, Amalia ^a   Peirano, Alessandra ^a   Steiner, Jeannette ^b   Eyzaguirre, Jaime ^a  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^b UNIVERSITY OF CHILE   (Chile)

Author keywords

Codon usage; Endoxylanase; Glycosyl hydrolase; Homology comparison; Nucleotide sequence; P. purpurogenum; PCR; Sequence alignment

Indexed keywords

COMPLEMENTARY DNA; FUNGAL PROTEIN; XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; MOLECULAR CLONING; NONHUMAN; PENICILLIUM; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROCESSING;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; ENDO-1,4-BETA XYLANASES; GENE EXPRESSION; MOLECULAR SEQUENCE DATA; PENICILLIUM; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; XYLOSIDASES;

PENICILLIUM; PENICILLIUM PURPUROGENUM;

EID: 0342601435     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(96)00762-7     Document Type: Article

References (40)

1. Altschul, S.F., Gish, W., Miller W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Apel, P.C., Panaccione, D.G., Holden, F.R. and Walton, J.D. (1993) Cloning and targeted gene disruption of XYL1, a β-1,4-xylanase gene from the maize pathogen Cochliobolus carbonum. Mol. Plant-Microbe Interact. 6, 467-473.
3. Belancic, A., Scarpa, J., Peirano, A., Díaz, R., Steiner, J. and Eyzaguirre, J. (1995) Penicillium purpurogenum produces several xylanases: purification and properties of two of the enzymes. J. Biotechnol. 41, 71-79.
4. Bray, M.R. and Clarke, A.J. (1994) Identification of a glutamate residue at the active site of xylanase A from Schizophyllum commune. Eur. J. Biochem. 219, 821-827.
5. Dalboge, H. and Heldt-Hansen, H.P. (1994) A novel method for efficient expression cloning of fungal enzyme genes. Mol. Gen. Genet. 243, 253-260.
6. De Graaff, L.H., Van den Broeck, H.C., Van Ooijen, A.J.J. and Visser, J. (1994) Regulation of the xylanase-encoding xlnA gene of Aspergillus tubigensis. Mol. Microbiol. 12, 479-490.
7. Depiereux, E. and Feytmans, E. (1991) Simultaneous and multivariate alignment of protein sequences: correspondence between physicochemical profiles and structurally conserved regions (SCR). Protein Eng. 4, 603-613.
8. Depiereux, E and. Feytmans, E. (1992) MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences. Comput. Appl. Biosci. 8, 501-509.
9. Fukusaki, E., Panbangred, W., Shinmyo, A. and Okada, H. (1984) The complete nucleotide sequence of the xylanase gene (xynA) of Bacillus pumilus. FEBS Lett. 171, 197-201.
10. Gilbert, H.J., Hazlewood, G.P., Laurie, J.I., Orpin, C.G. and Xue, G.P. (1992) Homologous catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin. Mol. Microbiol. 6, 2065-2072.
11. Gilkes, N.R., Henrissat, B., Kilburn, D.G., Miller Jr., R.C. and Warren, R.A.J. (1991) Domains in microbial β-1,4-glycanases: sequence conservation, function, and enzyme families. Microbiol. Rev. 55, 303-315.
12. Hessing, J.G.M., Van Rotterdam, C.O., Verbakel, J.M.A., Roza, M., Maat, J., Van Gorcom, R.F.M. and Van den Hondel, C.A.M.J.J. (1994) Isolation and characterization of a 1,4-β-endoxylanase gene of Aspergillus awamori. Curr. Genet. 26, 228-232.
13. Higgins and Sharp (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73, 237-244.
14. Irwin, D., Jung, E.D. and Wilson, D.B. (1994) Characterization and sequence of a Thermonospora fusca xylanase. Appl. Environ. Microbiol. 60, 763-770.
15. Ito, K., Iwashita, K. and Iwano, K. (1992) Cloning and sequencing of the xynC genes encoding acid xylanase of Aspergillus kawachii. Biosci. Biotechnol. Biochem. 56, 1338-1340.
16. Kinoshita, K., Takano, M., Koseki, T., Ito, K. and Iwano, K. (1995) Cloning of the xynNB gene encoding xylanase B from Aspergillus niger and its expression in Aspergillus kawachii. J. Ferment. Bioeng. 79, 422-428.
17. Ko, E.P., Akatsuka, H., Moriyama, H., Shinmyo, A., Hata, Y., Katsube, Y., Urabe, I. and Okada, H. (1992) Site-directed mutagenesis at aspartate and glutamate residues of xylanase from Bacillus pumilus. Biochem. J. 288, 117-121.
18. Koerner, T.J., Hill, J.E., Myers, A.M. and Tzagoloff, A. (1991) High-expression vectors with multiple cloning sites for construction of trpE fusion genes: pATH vectors. Methods Enzymol. 194, 477-490.
19. Li, X.L. and Ljungdahl, L.G. (1994) Cloning, sequencing, and regulation of a xylanase gene from the fungus Aureobasidium pullulans Y-2311-1. Appl. Environ. Microbiol. 60 (1994) 3160-3166. Maat, J., Roza, M., Verbakel, J., Stam, H., Santos da Silva, M.J., Bosse, M., Egmond, M.R., Hagemans, M.L.D., Van Gorcom, R.F.M., Hessing, J.G.M., Van den Hondel, C.A.M.J.J. and Van Rotterdam, C.O. (1992) Xylanases and their application in bakery. In: Visser, J., Beldman, G., Kusters-van Someren, M.A. and Voragen, A.G.J. (Eds.), Xylans and Xylanases. Elsevier, Amsterdam, pp. 349-360.
20. Li, X.L. and Ljungdahl, L.G. (1994) Cloning, sequencing, and regulation of a xylanase gene from the fungus Aureobasidium pullulans Y-2311-1. Appl. Environ. Microbiol. 60 (1994) 3160-3166. Maat, J., Roza, M., Verbakel, J., Stam, H., Santos da Silva, M.J., Bosse, M., Egmond, M.R., Hagemans, M.L.D., Van Gorcom, R.F.M., Hessing, J.G.M., Van den Hondel, C.A.M.J.J. and Van Rotterdam, C.O. (1992) Xylanases and their application in bakery. In: Visser, J., Beldman, G., Kusters-van Someren, M.A. and Voragen, A.G.J. (Eds.), Xylans and Xylanases. Elsevier, Amsterdam, pp. 349-360.
21. Millward-Sadler, S.J., Poole, D.M., Henrissat, B., Hazlewood, G.P., Clarke, J.H. and Gilbert, H.J. (1994) Evidence for a general role for high-affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases. Mol. Microbiol. 11, 375-382.
22. Millward-Sadler, S.J., Davidson, K., Hazlewood, G.P., Black, G.W., Gilbert, H.J. and Clarke, J.H. (1995) Novel cellulose-binding domains, NodB homologues and conserved modular architecture in xylanases from the aerobic soil bacteria Pseudomonas fluorescens subsp. cellulosa and Cellvibrio mixtus. Biochem. J. 312, 39-48.
23. Oku, T., Roy, C., Watson, D.C., Wakarchuk, W., Campbell, R., Yaguchi, M., Jurasek, L. and Paice, M.G. (1993) Amino acid sequence and thermostability of xylanase A from Schyzophyllum commune. FEBS Lett. 334, 296-300.
24. Paice, M.G., Bourbonnais, R., Desrochers, M., Jurasek, L. and Yaguchi, M. (1986) A xylanase gene from Bacillus subtilis: nucleotide sequence and comparison with Bacillus pumilus gene. Arch. Microbiol. 144, 201-206.
25. Paradis, F.W., Zhu, H., Krell, P.J., Phillips, J.P. and Forsberg, C.W. (1993) The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains. J. Bacteriol. 175, 7666-7672.
26. Sakka, K., Kojima, Y., Kondo, T., Karita, S.-I., Ohmiya, K. and Shimada, K. (1993) Nucleotide sequence of the Clostridium stercorarium xynA gene encoding xylanase A: identification of catalytic and cellulose binding domains. Biosci. Biotechnol. Biochem. 57, 273-277.
27. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
28. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467.
29. Shareck, F., Roy, C., Yaguchi, M., Morosoli, R. and Kluepfel, D. (1991) Sequences of three genes specifying xylanases in Streptomyces lividans. Gene 107, 75-82.
30. Steiner, J., Socha, C. and Eyzaguirre, J. (1994) Culture conditions for enhanced cellulase production by a native strain of Penicillium purpurogenum. World J. Microbiol. Biotechnol. 10, 280-284.
31. Törrönen, A., Mach, R.L., Messner, R., Gonzalez, R., Kalkkinen, N., Harkki, A. and Kubicek, C.P. (1992) The two major xylanases from Trichoderma reesei: characterization of both enzymes and genes. Bio/Technology 10, 1461-1465.
32. Törrönen, A. and Rouvinen, J. (1995) Structural comparison of two major endo-1,4-xylanases from Trichoderma reesei. Biochemistry 34, 847-856.
33. Wakarchuk, W.W., Campbell, R.L., Sung, W.L., Davoodi, J. and Yaguchi, M. (1994) Mutational and crystallographic analyses of the active site residues of the Bacillus circulans xylanase. Prot. Sci. 3, 467-475.
34. Wu, S.-C., Kaufman, S., Darvill, A.G. and Albersheim, P. (1995) Purification, cloning and characterization of two xylanases from Magnaporthe grisea, the rice blast fungus. Mol. Plant-Microbe Interact. 8, 506-514.
35. Yaguchi, M., Roy, C., Watson, D.C., Rollin, F., Tan, L.U.L., Senior, D.J. and Saddler, N. (1992a) The amino acid sequence of the 20KD xylanase from Trichoderma harzianum E58. In: Visser J., Beldman G., Kusters-van Someren M.A. and Voragen A.G.J. (Eds.), Xylans and Xylanases. Elsevier, Amsterdam, pp. 435-438.
36. Yaguchi, M., Roy, C., Ujiie, M., Watson, D.C. and Wakarchuk, W. (1992b) Amino acid sequence of the low-molecular weight xylanase from Trichoderma viride. In: Visser J., Beldman G., Kusters-van Someren M.A. and Voragen A.G.J. (Eds.), Xylans and Xylanases. Elsevier, Amsterdam, pp. 349-360.
37. Yang, R.C.A., Mackenzie, C.R. and Narang, S.A. (1988) Nucleotide sequence of a Bacillus circulans xylanase gene. Nucleic Acids Res. 16, 7187-7187.
38. Yoshino, S., Oishi, M., Moriyama, R., Kato, M. and Tsukagoshi, N. (1995) Two family G xylanase genes from Chaetomium gracile and their expression in Aspergillus nidulans. Curr. Genet. 29, 73-80.
39. Zappe, H., Jones, W.A. and Woods, D.R. (1990) Nucleotide sequence of a Clostridium acetobutylicum P262 xylanase gene (xynB). Nucleic Acids Res. 18, 2179-2179.
40. Zhang, J.-X. and Flint, H.J. (1992) A bifunctional xylanase encoded by the xynA gene of the rumen cellulolytic bacterium Ruminococcus flavefaciens 17 comprises two dissimilar domains linked by an asparagine/glutamine-rich sequence. Mol. Microbiol. 6, 1013-1023.