메뉴 건너뛰기




Volumn 16, Issue 10, 2006, Pages 1198-1207

Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; HISTONE;

EID: 33749399886     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.5440306     Document Type: Article
Times cited : (27)

References (40)
  • 3
    • 0037168542 scopus 로고    scopus 로고
    • POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer
    • Bera, T.K., Zimonjic, D.B., Popescu, N.C., Sathyanarayana, B.K., Kumar, V., Lee, B., and Pastan, I. 2002. POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer. Proc. Natl. Acad. Sci. 99: 16975-16980.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 16975-16980
    • Bera, T.K.1    Zimonjic, D.B.2    Popescu, N.C.3    Sathyanarayana, B.K.4    Kumar, V.5    Lee, B.6    Pastan, I.7
  • 5
    • 0036337759 scopus 로고    scopus 로고
    • Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes
    • Boggs, B.A., Cheung, P., Heard, E., Spector, D.L., Chinault, A.C., and Allis, C.D. 2002. Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes. Nat. Genet. 30: 73-76.
    • (2002) Nat. Genet. , vol.30 , pp. 73-76
    • Boggs, B.A.1    Cheung, P.2    Heard, E.3    Spector, D.L.4    Chinault, A.C.5    Allis, C.D.6
  • 6
    • 1442323788 scopus 로고    scopus 로고
    • Bisulfite conversion of genomic DNA for methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput
    • Boyd, V.L. and Zon, G. 2004. Bisulfite conversion of genomic DNA for methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput. Anal. Biochem. 326: 278-280.
    • (2004) Anal. Biochem. , vol.326 , pp. 278-280
    • Boyd, V.L.1    Zon, G.2
  • 7
    • 0842309823 scopus 로고    scopus 로고
    • Sodium boric acid: A Tris-free, cooler conductive medium for DNA electrophoresis
    • Brody, J.R. and Kern, S.E. 2004. Sodium boric acid: A Tris-free, cooler conductive medium for DNA electrophoresis. Biotechniques 36: 214-216.
    • (2004) Biotechniques , vol.36 , pp. 214-216
    • Brody, J.R.1    Kern, S.E.2
  • 8
    • 0141541814 scopus 로고    scopus 로고
    • Juxtacentromeric region of human chromosome 21: A boundary between centromeric heterochromatin and euchromatic chromosome arms
    • Brun, M.E., Ruault, M., Ventura, M., Roizes, G., and De Sario, A. 2003. Juxtacentromeric region of human chromosome 21: A boundary between centromeric heterochromatin and euchromatic chromosome arms. Gene 312: 41-50.
    • (2003) Gene , vol.312 , pp. 41-50
    • Brun, M.E.1    Ruault, M.2    Ventura, M.3    Roizes, G.4    De Sario, A.5
  • 11
    • 12344299286 scopus 로고    scopus 로고
    • Variable and hierarchical size distribution of L1-retroelement-enriched CENP-A clusters within a functional human neocentromere
    • Chueh, A.C., Wong, L.H., Wong, N., and Choo, K.H. 2005. Variable and hierarchical size distribution of L1-retroelement-enriched CENP-A clusters within a functional human neocentromere. Hum. Mol. Genet. 14: 85-93.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 85-93
    • Chueh, A.C.1    Wong, L.H.2    Wong, N.3    Choo, K.H.4
  • 12
    • 0036371904 scopus 로고    scopus 로고
    • Combined bisulfite restriction analysis (COBRA)
    • Eads, C.A. and Laird, P.W. 2002. Combined bisulfite restriction analysis (COBRA). Methods Mol. Biol. 200: 71-85.
    • (2002) Methods Mol. Biol. , vol.200 , pp. 71-85
    • Eads, C.A.1    Laird, P.W.2
  • 13
    • 0037068353 scopus 로고    scopus 로고
    • DNA methylation in cancer: Too much, but also too little
    • Ehrlich, M. 2002. DNA methylation in cancer: Too much, but also too little. Oncogene 21: 5400-5413.
    • (2002) Oncogene , vol.21 , pp. 5400-5413
    • Ehrlich, M.1
  • 15
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia of DNA Elements) Project
    • ENCODE Project Consortium
    • ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
    • (2004) Science , vol.306 , pp. 636-640
  • 17
    • 0034326284 scopus 로고    scopus 로고
    • Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes
    • Grunau, C., Hindermann, W., and Rosenthal, A. 2000. Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes. Hum. Mol. Genet. 9: 2651-2663.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2651-2663
    • Grunau, C.1    Hindermann, W.2    Rosenthal, A.3
  • 18
    • 0035407651 scopus 로고    scopus 로고
    • Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
    • Grunau, C., Clark, S.J., and Rosenthal, A. 2001. Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters. Nucleic Acids Res. 29: E65.
    • (2001) Nucleic Acids Res. , vol.29
    • Grunau, C.1    Clark, S.J.2    Rosenthal, A.3
  • 21
    • 0037317323 scopus 로고    scopus 로고
    • Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p
    • Guy, J., Hearn, T., Crosier, M., Mudge, J., Viggiano, L., Koczan, D., Thiesen, H.J., Bailey, J.A., Horvath, J.E., Eichler, E.E., et al. 2003. Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p. Genome Res. 13: 159-172.
    • (2003) Genome Res. , vol.13 , pp. 159-172
    • Guy, J.1    Hearn, T.2    Crosier, M.3    Mudge, J.4    Viggiano, L.5    Koczan, D.6    Thiesen, H.J.7    Bailey, J.A.8    Horvath, J.E.9    Eichler, E.E.10
  • 22
    • 0025141652 scopus 로고
    • Repeat unit sequence variation in minisatellites: A novel source of DNA polymorphism for studying variation and mutation by single molecule analysis
    • Jeffreys, A.J., Neumann, R., and Wilson, V. 1990. Repeat unit sequence variation in minisatellites: A novel source of DNA polymorphism for studying variation and mutation by single molecule analysis. Cell 60: 473-485.
    • (1990) Cell , vol.60 , pp. 473-485
    • Jeffreys, A.J.1    Neumann, R.2    Wilson, V.3
  • 23
    • 0037131524 scopus 로고    scopus 로고
    • Setting the boundaries of chromatin domains and nuclear organization
    • Labrador, M. and Corces, V.G. 2002. Setting the boundaries of chromatin domains and nuclear organization. Cell 111: 151-154.
    • (2002) Cell , vol.111 , pp. 151-154
    • Labrador, M.1    Corces, V.G.2
  • 24
    • 0041377778 scopus 로고    scopus 로고
    • Recombination across the centromere of disjoined and non-disjoined chromosome 21
    • Laurent, A.M., Li, M., Sherman, S., Roizes, G., and Buard, J. 2003. Recombination across the centromere of disjoined and non-disjoined chromosome 21. Hum. Mol. Genet. 12: 2229-2239.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 2229-2239
    • Laurent, A.M.1    Li, M.2    Sherman, S.3    Roizes, G.4    Buard, J.5
  • 25
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • Li, L.C. and Dahiya, R. 2002. MethPrimer: Designing primers for methylation PCRs. Bioinformatics 18: 1427-1431.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 26
    • 0034703717 scopus 로고    scopus 로고
    • Transcription factor dosage affects changes in higher order chromatin structure associated with activation of a heterochromatic gene
    • Lundgren, M., Chow, C.M., Sabbattini, P., Georgiou, A., Minaee, S., and Dillon, N. 2000. Transcription factor dosage affects changes in higher order chromatin structure associated with activation of a heterochromatic gene. Cell 103: 733-743.
    • (2000) Cell , vol.103 , pp. 733-743
    • Lundgren, M.1    Chow, C.M.2    Sabbattini, P.3    Georgiou, A.4    Minaee, S.5    Dillon, N.6
  • 27
    • 0036509836 scopus 로고    scopus 로고
    • Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component
    • Maison, C., Bailly, D., Peters, A.H., Quivy, J.P., Roche, D., Taddei, A., Lachner, M., Jenuwein, T., and Almouzni, G. 2002. Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component. Nat. Genet. 30: 329-334.
    • (2002) Nat. Genet. , vol.30 , pp. 329-334
    • Maison, C.1    Bailly, D.2    Peters, A.H.3    Quivy, J.P.4    Roche, D.5    Taddei, A.6    Lachner, M.7    Jenuwein, T.8    Almouzni, G.9
  • 28
    • 30344441689 scopus 로고    scopus 로고
    • The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets
    • McCaskie, P.A., Carter, K.W., McCaskie, S.R., and Palmer, L.J. 2005. The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets. BMC Genet. (Suppl. 1) 6: S151.
    • (2005) BMC Genet. (Suppl. 1) , vol.6
    • McCaskie, P.A.1    Carter, K.W.2    McCaskie, S.R.3    Palmer, L.J.4
  • 30
    • 9244237106 scopus 로고    scopus 로고
    • Evolutionary implications of pericentromeric gene expression in humans
    • Mudge, J.M. and Jackson, M.S. 2005. Evolutionary implications of pericentromeric gene expression in humans. Cytogenet. Genome Res. 108: 47-57.
    • (2005) Cytogenet. Genome Res. , vol.108 , pp. 47-57
    • Mudge, J.M.1    Jackson, M.S.2
  • 31
    • 26844482093 scopus 로고    scopus 로고
    • A fine-scale map of recombination rates and hotspots across the human genome
    • Myers, S., Bottolo, L., Freeman, C., McVean, G., and Donnelly, P. 2005. A fine-scale map of recombination rates and hotspots across the human genome. Science 310: 321-324.
    • (2005) Science , vol.310 , pp. 321-324
    • Myers, S.1    Bottolo, L.2    Freeman, C.3    McVean, G.4    Donnelly, P.5
  • 34
    • 0036927009 scopus 로고    scopus 로고
    • New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile
    • Ruault, M., van der Bruggen, P., Brun, M.E., Boyle, S., Roizes, G., and De Sario, A. 2002. New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile. Eur. J. Hum. Genet. 10: 833-840.
    • (2002) Eur. J. Hum. Genet. , vol.10 , pp. 833-840
    • Ruault, M.1    Van Der Bruggen, P.2    Brun, M.E.3    Boyle, S.4    Roizes, G.5    De Sario, A.6
  • 35
    • 0037380764 scopus 로고    scopus 로고
    • BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure
    • Ruault, M., Ventura, M., Galtier, N., Brun, M.E., Archidiacono, N., Roizes, G., and De Sario, A. 2003. BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure. Genomics 81: 391-399.
    • (2003) Genomics , vol.81 , pp. 391-399
    • Ruault, M.1    Ventura, M.2    Galtier, N.3    Brun, M.E.4    Archidiacono, N.5    Roizes, G.6    De Sario, A.7
  • 36
    • 0345603004 scopus 로고    scopus 로고
    • The CpG island searcher: A new WWW resource
    • Takai, D. and Jones, P.A. 2003. The CpG island searcher: A new WWW resource. In Silico Biol. 3: 235-240.
    • (2003) In Silico Biol. , vol.3 , pp. 235-240
    • Takai, D.1    Jones, P.A.2
  • 38
    • 5444223019 scopus 로고    scopus 로고
    • Site-specific analysis of histone methylation and acetylation
    • Umlauf, D., Goto, Y., and Feil, R. 2004. Site-specific analysis of histone methylation and acetylation. Methods Mol. Biol. 287: 99-120.
    • (2004) Methods Mol. Biol. , vol.287 , pp. 99-120
    • Umlauf, D.1    Goto, Y.2    Feil, R.3
  • 39
    • 0030697141 scopus 로고    scopus 로고
    • Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
    • Warnecke, P.M., Stirzaker, C., Melki, J.R., Millar, D.S., Paul, C.L., and Clark, S.J. 1997. Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. Nucleic Acids Res. 25: 4422-4426.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4422-4426
    • Warnecke, P.M.1    Stirzaker, C.2    Melki, J.R.3    Millar, D.S.4    Paul, C.L.5    Clark, S.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.