BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure

Genomics

Volumn 81, Issue 4, 2003, Pages 391-399

  Ruault, Myriam ^a   Ventura, Mario ^b   Galtier, Nicolas ^c   Brun, Marie Elisabeth ^a   Archidiacono, Nicoletta ^b   Roizès, Gérard ^a   De Sario, Albertina ^a  

^a INSTITUTE OF HUMAN GENETICS   (France)

^b Sezione Genetica   (Italy)

^c CNRS   (France)

Author keywords

BAGE; Chromosome 21; Chromosome duplications; Genome plasticity; Juxtacentromeric regions; Selective pressure

Indexed keywords

B MELANOMA ANTIGEN; DNA FRAGMENT; MELANOMA ANTIGEN; MIXED LINEAGE LEUKEMIA PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CENTROMERE; CHROMOSOME 13; CHROMOSOME 21; CHROMOSOME DUPLICATION; CHROMOSOME REARRANGEMENT; CHROMOSOME STRUCTURE; EVOLUTION; GENE EXPRESSION; GENE FUNCTION; GENE STRUCTURE; GENETIC VARIABILITY; HOMINID; HUMAN; HUMAN CELL; JUXTACENTROMERIC REGION; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASTICITY; PRIORITY JOURNAL; PROTEIN FUNCTION;

HOMINIDAE; HOMO;

EID: 0037380764     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0888-7543(03)00025-9     Document Type: Article

References (25)

1. Ohno S. Evolution by Gene Duplication. 1970;Springer Verlag, Berlin.
2. Eichler E.E. Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends Genet. 17:2001;661-669.
3. Bailey J.A., Yavor A.M., Massa H.F., Trask B., Eichler E.E. Segmental duplications organization and impact within the current human genome project assembly . Genome Res. 11:2001;1005-1017.
4. Eichler E.E., Archidiacono N., Rocchi M. CAGGG repeats and the pericentromeric duplication of the hominoid genome. Genome Res. 9:1999;1048-1058.
5. Iyer G.S., et al. Identification of a testes-expressed creatine transporter gene at 16p11.2 and confirmation of the X-linked locus to Xq28. Genomics. 34:1996;143-146.
6. Ruault M., et al. Juxta-centromeric region of human chromosome 21 is enriched for pseudogenes and gene fragments. Gene. 239:1999;55-64.
7. Jackson M.S., et al. Sequences flanking the centromere of human chromosome 10 are a complex patchwork of arm-specific sequences, stable duplications and unstable sequences with homology to telomeric and other centromeric locations. Hum. Mol. Genet. 8:1999;205-215.
8. Horvath E.J., et al. Molecular structure and evolution of an alpha satellite/non-alpha satellite junction at 16p11. Hum. Mol. Genet. 9:2000;113-123.
9. Footz T.K., et al. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice a search for candidate genes at or near the human chromosome 22 pericentromere . Genome Res. 11:2001;1053-1070.
10. Guipponi M., et al. Genomic structure of a copy of the human TPTE gene which encompasses 87 kb on the short arm of chromosome 21. Hum. Genet. 107:2000;127-131.
11. Ruault M., van der Bruggen P., Brun M.-E., Boyle S., Roizès G., De Sario A. New BAGE (B melanoma antigen) genes mapping to the juxtacentromeric regions of human chromosomes 13 and 21 have a cancer/testis expression profile. Eur. J. Hum. Genet. 10:2002;833-840.
12. Boël P., et al. BAGE a new gene encoding an antigen recognized on human melanomas by cytolytic T lymphocytes . Immunity. 2:1995;167-175.
13. Ruault M., Brun M.E., Ventura M., Roizès G., De Sario A. MLL3, a new human member of the TRX/MLL gene family, maps to 7q36, a chromosome region frequently deleted in myeloid leukemia. Gene. 284:2002;73-81.
14. Li W.H. Unbiased estimates of the rate of synonymous and non-synonymous substitutions. J. Mol. Evol. 36:1993;96-99.
15. Goldman N., Yang Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:1994;725-736.
16. Mirre C., Hartung M., Stahl A. Association of ribosomal genes in the fibrillar center of the nucleolus a factor influencing translocation and nondisjunction in the human meiotic oocyte . Proc. Natl. Acad. Sci. USA. 77:1980;6017-6021.
17. Ruvolo M. Molecular phylogeny of the hominoids Inferences from multiple independent data sets . Mol. Biol. Evol. 14:1997;248-265.
18. Courseaux A., Nahon J.L. Birth of two chimeric genes in the hominidae lineage. Science. 291:2001;1293-1297.
19. Johnson M.E., et al. Positive selection of a gene family during the emergence of humans and African apes. Nature. 413:2001;514-519.
20. Crosier M., et al. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. Genome Res. 12:2002;67-80.
21. Saitou N., Nei M. The neighbor-joining method a new method for reconstructing phylogenetic trees . Mol. Biol. Evol. 4:1987;406-425.
22. Galtier N., Gouy M., Gautier C. SEAVIEW and PHYLO_WIN two graphic tools for sequence alignment and molecular phylogeny . Comput. Appl. Biosci. 12:1996;543-548.
23. Lichter P., et al. High resolution mapping of human chromosomes 11 by in situ hybridization with cosmid clones. Science. 247:1990;64-69.
24. Bellis M., Pagès M., Roizès G. Rapid method for preparing yeast chromosomes for PFG. Nucleic Acids Res. 15:1987;6749.
25. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning A Laboratory Manual . 2nd ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.