Insights into allosteric control of vinculin function from its large scale conformational dynamics

Journal of Biological Chemistry

Volumn 281, Issue 39, 2006, Pages 29148-29154

  Chen, Yiwen ^a   Dokholyan, Nikolay V ^b  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOINHIBITED CONFORMATION; CELL-MATRIX JUNCTIONS; KINETIC SIMULATIONS; VINCULIN;

ACTIVATION ENERGY; BINDING ENERGY; CELLS; CONFORMATIONS; MOLECULAR BIOLOGY;

PROTEINS;

CADHERIN; INTEGRIN; TALIN; VINCULIN;

ALLOSTERISM; ARTICLE; DYNAMICS; EXTRACELLULAR MATRIX; KINETICS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE;

ACTINS; ALLOSTERIC SITE; ANIMALS; CELL ADHESION; CYTOSKELETON; INTEGRINS; KINETICS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; TALIN; TEMPERATURE; THERMODYNAMICS; TOXOPLASMA; VINCULIN;

EID: 33749386789     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605512200     Document Type: Article

References (38)

1. DeMali, K. A., Barlow, C. A., and Burridge, K. (2002) J. Cell Biol. 159, 881-891
2. Fernandez, J. L. R., Geiger, B., Salomon, D., Sabanay, I., Zoller, M., and Benzeev, A. (1992) J. Cell Biol. 119, 427-438
3. Fernandez, J. L. R., Geiger, B., Salomon, D., and Benzeev, A. (1993) J. Cell Biol. 122, 1285-1294
4. Volberg, T., Geiger, B., Kam, Z., Pankov, R., Simcha, I., Sabanay, H., Coll, J. L., Adamson, E., and Ben Ze'ev, A. (1995) J. Cell Sci. 108, 2253-2260
5. Xu, W., Baribault, H., and Adamson, E. D. (1998) Development (Camb.) 125, 327-337
6. Johnson, R. P., and Craig, S. W. (1995) Nature 373, 261-264
7. Johnson, R. P., and Craig, S. W. (1995) Biochem. Biophys. Res. Commun. 210, 159-164
8. Pokutta, S., and Weis, W. I. (2002) Curr. Opin. Struct. Biol. 12, 255-262
9. Zamir, E., and Geiger, B. (2001) J. Cell Sci. 114, 3583-3590
10. Critchley, D. R. (2000) Curr. Opin. Cell Biol. 12, 133-139
11. Bakolitsa, C., Cohen, D. M., Bankston, L. A., Bobkov, A. A., Cadwell, G. W., Jennings, L., Critchley, D. R., Craig, S. W., and Liddington, R. C. (2004) Nature 430, 583-586
12. Gilmore, A. P., and Burridge, K. (1996) Nature 381, 531-535
13. Weekes, J., Barry, S. T., and Critchley, D. R. (1996) Biochem. J. 314, 827-832
14. Bakolitsa, C., de Pereda, J. M., Bagshaw, C. R., Critchley, D. R., and Liddington, R. C. (1999) Cell 99, 603-613
15. Izard, T., and Vonrhein, C. (2004) J. Biol. Chem. 279, 27667-27678
16. Izard, T., Evans, G., Borgon, R. A., Rush, C. L., Bricogne, G., and Bois, P. R. J. (2004) Nature 427, 171-175
17. Demali, K. A. (2004) Trends Biochem. Sci. 29, 565-567
18. Dokholyan, N. V., Buldyrev, S. V., Stanley, H. E., and Shakhnovich, E. I. (1998) Fold. Des. 3, 577-587
19. Rapaport, D. C. (2004) The Art of Molecular Dynamics Stimulation, 2nd Ed., pp. 391-417, Cambridge University Press, Cambridge, UK
20. Smith, S. W., Hall, C. K., and Freeman, B. D. (1997) J. Comput. Phys. 134, 16-30
21. Sanchez, R., and Sali, A. (1997) Curr. Opin. Struct. Biol. 7, 206-214
22. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242
23. Ding, F., Prutzman, K. C., Campbell, S. L., and Dokholyan, N. V. (2006) Structure (Camb.) 14, 5-14
24. Ding, F., Dokholyan, N. V., Buldyrev, S. V., Stanley, H. E., and Shakhnovich, E. I. (2002) Biophys. J. 83, 3525-3532
25. Abe, H., and Go, N. (1981) Biopolymers 20, 1013-1031
26. Go, N., and Abe, H. (1981) Biopolymers 20, 991-1011
27. Ding, F., Dokholyan, N. V., Buldyrev, S. V., Stanley, H. E., and Shakhnovich, E. I. (2002) J. Mol. Biol. 324, 851-857
28. Onuchic, J. N., Nymeyer, H., Garcia, A. E., Chahine, J., and Socci, N. D. (2000) Adv. Protein Chem. 53, 87-152
29. Amadei, A., Linssen, A. B., and Berendsen, H. J. (1993) Proteins 17, 412-425
30. Ichiye, T., and Karplus, M. (1991) Proteins Struct. Funct. Genet. 11, 205-217
31. Papagrigoriou, E., Gingras, A. R., Barsukov, I. L., Bate, N., Fillingham, I. J., Patel, B., Frank, R., Ziegler, W. H., Roberts, G. C., Critchley, D. R., and Emsley, J. (2004) EMBO J. 23, 2942-2951
32. Berendsen, H. J., and Hayward, S. (2000) Curr. Opin. Struct. Biol. 10, 165-169
33. Bois, P. R., O'Hara, B. P., Nietlispach, D., Kirkpatrick, J., and Izard, T. (2006) J. Biol. Chem. 281, 7228-7236
34. Tobi, D., and Bahar, I. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 18908-18913
35. Bass, M. D., Smith, B. J., Prigent, S. A., and Critchley, D. R. (1999) Biochem. J. 341, 257-263
36. Subauste, M. C., Pertz, O., Adamson, E. D., Turner, C. E., Junger, S., and Hahn, K. M. (2004) J. Cell Biol. 165, 371-381
37. DeMali, K. A., and Burridge, K. (2003) J. Cell Sci. 116, 2389-2397
38. Cohen, D. M., Chen, H., Johnson, R. P., Choudhury, B., and Craig, S. W. (2005) J. Biol. Chem. 280, 17109-17117