Analysis of the HUPO Brain Proteome reference samples using 2-D DIGE and 2-D LC-MS/MS

Proteomics

Volumn 6, Issue 18, 2006, Pages 4950-4966

  Fröhlich, Thomas ^a   Helmstetter, Derrick ^a   Zobawa, Monica ^b   Crecelius, Anna C ^a   Arzberger, Thomas ^a   Kretzschmar, Hans A ^a   Arnold, Georg J ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

2 D LC MS MS; Brain; Development; DIGE; Proteome

Indexed keywords

BRAIN PROTEIN; MEMBRANE PROTEIN; PROTEIN E16; PROTEIN P7; PROTEIN W8; SUPEROXIDE DISMUTASE; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; BRAIN DEVELOPMENT; CONTROLLED STUDY; DATA BASE; EMBRYO DEVELOPMENT; GENE MUTATION; HEALTH CARE ORGANIZATION; HUMAN; HUMAN TISSUE; LABORATORY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PERINATAL PERIOD; PH; PILOT STUDY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AGING; AMINO ACID SEQUENCE; ANIMALS; BRAIN; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FLUORESCENT DYES; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MALE; MASS SPECTROMETRY; MICE; MICE, INBRED C57BL; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PILOT PROJECTS; PROTEOME; REFERENCE STANDARDS;

MURINAE;

EID: 33749249918     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200600079     Document Type: Article

References (52)

1. Omenn, G. S., States, D. J., Adamski, M., Blackwell, T. W. et al., Proteomics 2005, 5, 3226-3245.
2. He, F., Mol. Cell. Proteomics 2005, 4, 1841-1848.
3. Hamacher, M., Meyer, H. E., Expert. Rev. Proteomics 2005, 2, 1-3.
4. Olsen, J. V., Andersen, J. R., Nielsen, P. A., Nielsen, M. L. et al., Mol. Cell. Proteomics 2004, 3, 82-92.
5. Nielsen, P. A., Olsen, J. V., Podtelejnikov, A. V., Andersen, J. R. et al., Mol. Cell. Proteomics 2005, 4, 402-408.
6. Klose, J., Nock, C., Herrmann, M., Stuhler, K. et al., Nat. Genet. 2002, 30, 385-393.
7. Ishihama, Y., Sato, T., Tabata, T., Miyamoto, N. et al., Nat. Biotechnol. 2005, 23, 617-621.
8. Beranova-Giorgianni, S., Pabst, M. J., Russell, T. M., Giorgianni, F. et al., Brain Res. Mol. Brain Res. 2002, 98, 135-140.
9. Krapfenbauer, K., Fountoulakis, M., Lubec, G., Electrophoresis 2003, 24, 1847-1870.
10. Brenna, J. T., Rapid Commun. Mass Spectrom. 2001, 15, 1252-1262.
11. Edgar, P. F., Douglas, J. E., Knight, C., Cooper, G. J. et al., Hippocampus 1999, 9, 644-650.
12. Langen, H., Berndt, P., Roder, D., Cairns, N. et al., Electrophoresis 1999, 20, 907-916.
13. Fountoulakis, M., Juranville, J. F., Dierssen, M., Lubec, G., Proteomics 2002, 2, 1547-1576.
14. Butterfield, D. A., Boyd-Kimball, D., Castegna, A., J. Neurochem. 2003, 86, 1313-1327.
15. Tsuji, T., Shiozaki, A., Kohno, R., Yoshizato, K., Shimohama, S., Neurochem. Res. 2002, 27, 1245-1253.
16. Schonberger, S. J., Edgar, P. F., Kydd, R., Faull, R. L., Cooper, G. J., Proteomics 2001, 1, 1519-1528.
17. Zabel, C., Klose, J., Int. Rev. Neurobiol. 2004, 61, 241-283.
18. Zabel, C., Chamrad, D. C., Priller, J., Woodman, B. et al., Mol. Cell. Proteomics 2002, 1, 366-375.
19. De Iuliis, A., Grigoletto, J., Recchia, A., Giusti, P., Arslan, P., Clin. Chim. Acta 2005, 357, 202-209.
20. Basso, M., Giraudo, S., Corpillo, D., Bergamasco, B. et al., Proteomics 2004, 4, 3943-3952.
21. Zhang, J., Goodlett, D. R., Mol. Neurobiol. 2004, 29, 271-288.
22. Johnston-Wilson, N. L., Sims, C. D., Hofmann, J. P., Anderson, L. et al., Mol. Psychiatry 2000, 5, 142-149.
23. Paulson, L., Martin, P., Persson, A., Nilsson, C. L. et al., J. Neurosci. Res. 2003, 71, 526-533.
24. Edgar, P. F., Schonberger, S. J., Dean, B., Faull, R. L. et al., Mol. Psychiatry 1999, 4, 173-178.
25. Harnacher, M., Klose, J., Rossier, J., Marcus, K., Meyer, H. E., Proteomics 2004, 4, 1932-1934.
26. Bradford, M. M., Anal. Biochem. 1976, 72, 248-254.
27. Palagi, P. M., Walther, D., Quadroni, M., Catherinet, S. et al., Proteomics 2005, 5, 2381-2384.
28. Al Shahrour, F., Diaz-Uriarte, R., Dopazo, J., Bioinformatics 2004, 20, 578-580.
29. Ünlü, M., Morgan, M. E., Minden, J. S., Electrophoresis 1997, 18, 2071-2077.
30. Alban, A., David, S. O., Bjorkesten, L., Andersson, C. et al., Proteomics 2003, 3, 36-44.
31. Karp, N. A., Griffin, J. L., Lilley, K. S., Proteomics 2005, 5, 81-90.
32. Fodor, I. K., Nelson, D. O., Alegria-Hartman, M., Robbins, K. et al., Bioinformatics 2005, 21, 3733-3740.
33. Chan, S. O., Peng, D., Chiu, F. C., Brain Res. 1997, 775, 107-118.
34. Fountoulakis, M., Hardmaier, R., Schuller, E., Lubec, G., Electrophoresis 2000, 21, 673-678.
35. Sellner, P. A., Chu, W., Glatz, J. F., Berman, N. E., Brain Res. Dev. Brain Res. 1995, 89, 33-46.
36. Minturn, J. E., Fryer, H. J., Geschwind, D. H., Hockfield, S., J. Neurosci. 1995, 15, 6757-6766.
37. Goshima, Y., Nakamura, F., Strittmatter, P., Strittmatter, S. M., Nature 1995, 376, 509-514.
38. Fukata, Y., Kimura, T., Kaibuchi, K., Neurosci. Res. 2002, 43, 305-315.
39. Luo, Y., Raible, D., Raper, J. A., Cell 1993, 75, 217-227.
40. Kowara, R., Chen, Q., Milliken, M., Chakravarthy, B., J. Neurochem. 2005, 95, 466-474.
41. Inatome, R., Tsujimura, T., Hitomi, T., Mitsui, N. et al., J. Biol. Chem. 2000, 275, 27291-27302.
42. Fukada, M., Watakabe, I., Yuasa-Kawada, J., Kawachi, H. et al., J. Biol. Chem. 2000, 275, 37957-37965.
43. Ricard, D., Rogemond, V., Charrier, E., Aguera, M. et al., J. Neurosci. 2001, 21, 7203-7214.
44. Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., Proteomics 2005, 5, 3537-3545.
45. Jones, P., Cote, R. G., Martens, L., Quinn, A. F. et al., Nucleic Acids Res. 2006, 34, D659-D663.
46. Lin, D., Tabb, D. L., Yates, J. R. III, Biochim. Biophys. Acta 2003, 1646, 1-10.
47. Rabilloud, T., Proteomics 2002, 2, 3-10.
48. Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Electrophoresis 1999, 20, 3551-3567.
49. Kersey, P. J., Duarte, J., Williams, A., Karavidopoulou, Y. et al., Proteomics 2004, 4, 1985-1988.
50. Boeckmann, B., Blatter, M. C., Famiglietti, L., Hinz, U. et al., C. R. Biol. 2005, 328, 882-899.
51. Gene Ontology Consortium, Nucleic Acids Res. 2006, 34, D322-D326.
52. Kapp, E. A., Schutz, F., Connolly, L. M., Chakel, J. A. et al., Proteomics 2005, 5, 3475-3490.