Pilot study of the Human Proteome Organisation Brain Proteome Project: Applying different 2-DE techniques to monitor proteomic changes during murine brain development

Proteomics

Volumn 6, Issue 18, 2006, Pages 4899-4913

  Stühler, Kai ^a   Pfeiffer, Kathy ^a   Joppich, Cornelia ^a   Stephan, Christian ^a   Jung, Klaus ^b   Müller, Michael ^c   Schmidt, Oliver ^a   Van Hall, Andre ^a   Hamacher, Michael ^a   Urfer, Wolfgang ^b   Meyer, Helmut E ^a   Marcus, Katrin ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

^b TU DORTMUND UNIVERSITY   (Germany)

^c EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

Author keywords

2 DE; Aging; Brain; Development; Differential protein expression; Mouse

Indexed keywords

BRAIN PROTEIN;

AGING; ANIMAL TISSUE; ARTICLE; BRAIN DEVELOPMENT; CONTROLLED STUDY; HEALTH CARE ORGANIZATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; PILOT STUDY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MODIFICATION;

AGING; ANIMALS; BRAIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICE; MICE, INBRED C57BL; PILOT PROJECTS; PROTEOME; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

MURINAE;

EID: 33749239065     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200600089     Document Type: Article

References (54)

1. Klose, J., Nock, C., Herrmann, M., Stuhler, K. et al., Nat. Genet. 2002, 30, 385-393.
2. Enard, W., Khaitovich, P., Klose, J., Zollner, S. et al., Science 2002, 296, 340-343.
3. Fountoulakis, M., Mass Spectrom. Rev. 2004, 23, 231-258.
4. Klose, J., Kobalz, U., Electrophoresis 1995, 16, 1034-1059.
5. Klose, J., Humangenetik 1975, 26, 231-243.
6. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
7. Gorg, A., Obermaier, C., Boguth, G., Harder, A. et al., Electrophoresis 2000, 21, 1037-1053.
8. Gorg, A., Postel, W., Gunther, S., Electrophoresis 1988, 9, 531-546.
9. Bjellqvist, B., Ek, K., Righetti, P. G., Gianazza, E. et al., J. Biochem. Biophys. Methods 1982, 6, 317-339.
10. Anderson, N. G., Anderson, N. L., Electrophoresis 1996, 17, 443-453.
11. Rabilloud, T., Anal. Chem. 2000, 72, 48A-55A.
12. Marcus, K., Immler, D., Sternberger, J., Meyer, H. E., Electrophoresis 2000, 21, 2622-2636.
13. Heukeshoven, J., Dernick, R., Electrophoresis 1988, 9, 28-32.
14. Neuhoff, V., Arold, N., Taube, D., Ehrhardt, W., Electrophoresis 1988, 9, 255-262.
15. Schaefer, H., Chervet, J. P., Bunse, C., Joppich, C. et al., Proteomics 2004, 4, 2541-2544.
16. Yates, J. R., 3rd, Eng, J. K., Mccormack, A. L., Anal. Chem. 1995, 67, 3202-3210.
17. Yates, J. R., 3rd, Eng, J. K., Mccormack, A. L., Schieltz, D., Anal. Chem. 1995, 67, 1426-1436.
18. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. et al., J. Mol. Biol. 1990, 215, 403-410.
19. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Nat. Genet. 2000, 25, 25-29.
20. Camon, E., Magrane, M., Barrell, D., Lee, V. et al., Nucleic Acids Res. 2004, 32, D262-266.
21. Ihaka, R., Gentleman, R., J. Comput. Graph. Stat. 1996, 5, 299-314.
22. Benjamini, Y., Hochberg, Y., J. Roy. Stat. Soc. B 1995, 57, 289.
23. Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A. et al., Nucleic Acids Res. 2005, 33, D201-205.
24. Lopez, M. F., Patton, W. F., Electrophoresis 1997, 18, 338-343.
25. Karp, N. A., Kreil, D. P., Lilley, K. S., Proteomics 2004, 4, 1421-1432.
26. Jung, K., Gannoun, A., Sitek, B., Meyer, H. E. et al., RevStat-Statistical Journal 2005, 3, 99-111.
27. Sitek, B., Apostolov, O., Stuhler, K., Pfeiffer, K. et al., Mol. Cell. Proteomics 2005, 4, 291-299.
28. Sitek, B., Luttges, J., Marcus, K., Kloppel, G. et al., Proteomics 2005, 5, 2665-2679.
29. Volmer, M. W., Radacz, Y., Hahn, S. A., Klein-Scory, S. et al., Proteomics 2004, 4, 1324-1334.
30. Volmer, M. W., Stuhler, K., Zapatka, M., Schoneck, A. et al., Proteomics 2005, 5, 2587-2601.
31. Inagaki, N., Katsuta, K., Current Proteomics 2005, 1, 35-39.
32. Carboni, L., Piubelli, C., Righetti, P. G., Jansson, B. et al., Electrophoresis 2002, 23, 4132-4141.
33. Zhou, H., Chen, B., Li, R. X., Sheng, Q. H. et al., Rapid Commun. Mass Spectrom. 2005, 19, 3569-3578.
34. Jiang, L., He, L., Fountoulakis, M., J. Chromatogr. A 2004, 1023, 317-320.
35. Jung, K., Gannoun, A., Sitek, B., Apostolov, O. et al., RevStat-Statistical Journal 2006, 4, 67-80.
36. Mattson, M. P., Chan, S. L., Duan, W., Physiol. Rev. 2002, 82, 637-672.
37. Miranda, E., Lomas, D. A., Cell. Mol. Life Sci. 2006, 63, 709-722.
38. Khalili, K., Del Valle, L., Muralidharan, V., Gault, W. J. et al., Mol Cell Biol 2003, 23, 6857-6875.
39. Tretiakova, A., Otte, J., Croul, S. E., Kim, J. H. et al., J. Virol. 1999, 73, 6076-6084.
40. Mori, N., Morii, H., J. Neurosci. Res. 2002, 70, 264-273.
41. Sobel, A., Trends Biochem. Sci. 1991, 16, 301-305.
42. Jin, L. W., Masliah, E., Iimoto, D., Deteresa, R. et al., Neurobiol. Aging 1996, 17, 331-341.
43. Munch, G., Kuhla, B., Luth, H. J., Arendt, T. et al., Biochem. Soc. Trans. 2003, 31, 1397-1399.
44. Ledesma, M. D., Bonay, P., Colaco, C., Avila, J., J. Biol. Chem. 1994, 269, 21614-21619.
45. Kuhla, B., Boeck, K., Schmidt, A., Ogunlade, V. et al., Neurobiol. Aging 2006.
46. Clayton, D. F., George, J. M., J. Neurosci. Res. 1999, 58, 120-129.
47. Perez, R. G., Waymire, J. C., Lin, E., Liu, J. J. et al., J. Neurosci. 2002, 22, 3090-3099.
48. Dickson, D. W., Curr. Opin. Neurol. 2001, 14, 423-432.
49. Singleton, A. B., Farrer, M., Johnson, J., Singleton, A. et al., Science 2003, 302, 841.
50. Singleton, A., Myers, A., Hardy, J., Hum. Mol. Genet. 2004, R123-R126.
51. Lee, M. K., Stirling, W., Xu, Y., Xu, X. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 8968-8973.
52. Fujiwara, H., Hasegawa, M., Dohmae, N., Kawashima, A. et al., Nat. Cell Biol. 2002, 4, 160-164.
53. Martin, G. M., Austad, S. N., Johnson, T. E., Nat. Genet. 1996, 13, 25-34.
54. Chamrad, D., Meyer, H. E., Nat. Methods 2005, 2, 647-648.