Genetic variation of populations of Citrus psorosis virus

Journal of General Virology

Volumn 87, Issue 10, 2006, Pages 3097-3102

  Martín, Susana ^a   García, María Laura ^b,c   Troisi, Antonella ^d   Rubio, Luis ^a   Legarreta, Gonzalo ^b   Grau, Oscar ^b,e   Allioto, Daniela ^d   Moreno, Pedro ^a   Guerri, José ^a  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^b UNIVERSIDAD NACIONAL DE LA PLATA   (Argentina)

^c Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

^d UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^e Universidad Provincial del Sudoeste   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; NUCLEOTIDE; VIRUS RNA;

AMINO ACID SEQUENCE; ARGENTINA; ARTICLE; CITRUS PSOROSIS VIRUS; COMPARATIVE STUDY; CONTROLLED STUDY; EVOLUTION; GENE SEQUENCE; GENETIC VARIABILITY; ITALY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT VIRUS; POPULATION STRUCTURE; PRIORITY JOURNAL; SPAIN; UNITED STATES; VIRUS GENOME; VIRUS ISOLATION;

MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT VIRUSES; RNA VIRUSES; RNA, VIRAL; VARIATION (GENETICS);

CITRUS PSOROSIS VIRUS; OPHIOVIRUS;

EID: 33749067416     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81742-0     Document Type: Article

References (37)

1. Alioto, D., Malfitano, M., Troisi, A., Peluso, A., Martin, S., Milne, R. G., Guerri, J. & Moreno, P. (2003). Variability of the coat protein gene of Citrus psorosis virus in Campania, southern Italy. Arch Virol 148, 2155-2166.
2. Barthe, G. A., Ceccardi, T. L., Manjunath, K L. & Derrick K. S. (1998). Citrus psorosis virus: nucleotide sequencing of the coat protein gene and detection by hybridization and RT-PCR. J Gen Virol 79, 1531-1537.
3. Bonnet, J., Fraile, A., Sacristán, S., Malpica, J. M. & García-Arenal, F. (2005). Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology 332, 359-368.
4. Callaghan, B. & Dietzgen, R. G. (2005). Nucleocapsid gene variability reveals two subgroups of Lettuce necrotic yellows virus. Arch Virol 150, 1661-1667.
5. Chare, E. R. & Holmes, E. C. (2004). Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission. J Gen Virol 85, 3149-3157.
6. Derrick, K. S., Briansky, R. H., da Graça, J. V., Lee, R. F., Timmer, L. W. & Nguyen, T. K. (1988). Partial characterization of a virus associated with citrus ringspot. Phytopathology 78, 1298-1301.
7. Domingo, E. & Holland, J. J. (1994). Mutation rates and rapid evolution of RNA viruses. In The Evolutionary Biology of Viruses, pp. 161-168. Edited by S. S. Morse. New York: Raven Press.
8. Forster, R. L. S., Beck, D. L., Guilford, P. J., Voot, D. M., Vandolleweerd, C. J. & Andersen, M. T. (1992). The coat protein of white clover mosaic potexvirus has a role in facilitating cell-to-cell transport in plants. Virology 191, 480-484.
9. Garcia, M. L., Derrick K. S. & Grau, O. (1993). Citrus psorosis associated virus and citrus ringspot virus belong to a new virus group. In Proceedings of the 12th Conference of the International Organization of Citrus Virologists, pp. 430-431. Edited by P. Moreno, J. V. da Graça & L. W. Timmer. Riverside, CA: IOCV.
10. García, M. L., Dal Bo, E., Grau, O. & Milne, R. (1994). The closely related citrus ringspot and citrus psorosis viruses have particles of novel filamentous morphology. J Gen Virol 75, 3585-3590.
11. García-Arenal, F. & McDonald, B. A. (2003). An analysis of the durability of resistance to plant viruses. Phytopathology 93, 941-952.
12. García-Arenal, F., Fraile, A. & Malpica, J. M. (2001). Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39, 157-186.
13. Garnsey, S. M., Youtsey, C. O., Bridges, G. D. & Burnett, H. C. (1976). A necrotic ringspot-like virus found in a "Star Ruby" grapefruit tree imported without authorization from Texas. Proc Fla State Hort Soc 89, 63-67.
14. Jakobsen, I. B. & Easteal, S. (1996). A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput Appl Biosci 12, 291-295.
15. Kumar, S., Tamura, K, Jakobsen, L-B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Tempe, AZ: Arizona State University.
16. Lu, R., Folimonov, A., Shintaku, M., Li, W. X., Falk B. W., Dawson, W. O. & Ding, S. W. (2004). Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proc Natl Acad Sci U S A 101, 15742-15747.
17. Lynch, M. & Crease, T. J. (1990). The analysis of population survey data on DNA sequence variation. Mol Biol Evol 7, 377-394.
18. Malpica, J. M., Fraile, A., Moreno, I, Obies, C. I., Drake, J. W. & García-Arenal, F. (2002). The rate and character of spontaneous mutation in an RNA virus. Genetics 162, 1505-1511.
19. Marco, C. F. & Aranda, M. A. (2005). Genetic diversity of a natural population of Cucurbit yellow stunting disorder virus. J Gen Virol 86, 815-822.
20. Martín, S., Alioto, D., Milne, R. G., Gamsey, S. M., García, M. L., Grau, O., Guerri, J. & Moreno, P. (2004). Detection of Citrus psorosis virus by ELISA, molecular hybridization, RT-PCR and immunosorbent electron microscopy and its association with citrus psorosis disease. Eur J Plant Pathol 110, 747-757.
21. Martín, S., López, C., García, M. L., Naum-Onganía, G., Grau, O., Flores, R., Moreno, P. & Guerri, J. (2005). The complete nucleotide sequence of a Spanish isolate of Citrus psorosis virus: comparative analysis with other ophioviruses. Arch Virol 150, 167-176.
22. Miranda, G. J., Azzam, O. & Shirako, Y. (2000). Comparison of nucleotide sequence between northern and southern Philippine isolates of Rice grassy stunt virus indicates occurrence of natural genetic reassortments. Virology 266, 26-32.
23. Naum-Onganía, G., Gago-Zachert, S., Penña, E., Grau, O. & García, M. L. (2003). Citrus psorosis virus RNA 1 is of negative polarity and potentially encodes in its complementary strand a 24K protein of unknown function and 280K putative RNA dependent RNA polymerase. Virus Res 96, 49-61.
24. Navarro, J. A., Torok V. A., Vetten, H. J. & Pallás, V. (2005). Genetic variability in the coat protein genes of lettuce big-vein associated virus and Mirafiori lettuce big-vein virus. Arch Virol 150, 681-694.
25. Revill, P., Trinh, X., Dale, J. & Harding, R. (2005). Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus. J Gen Virol 86, 491-499.
26. Rubio, L., Ayllón, M. A., Kong, P., Fernández, A., Polek M., Guerri, J., Moreno, P. & Falk, B. W. (2001). Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination. J Virol 75, 8054-8062.
27. Sambrook J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
28. Sánchez de la Torre, E., Riva, O., Zandomeni, R., Grau, O. & García, M. L. (1998). The top component of citrus psorosis virus contains two ssRNAs, the smaller encodes the coat protein. Mol Plant Pathol On-Line. http://www.bspp.org.uk/mppol/1998/1019sanchez/index.htm
29. Sánchez de la Torre, M. E., López, C., Grau, O. & García, M. L. (2002). RNA 2 of Citrus psorosis virus is of negative polarity and has a single open reading frame in its complementary strand. J Gen Virol 83, 1777-1781.
30. Sawyer, S. (1989). Statistical tests for detecting gene conversion. Mol Biol Evol 6, 526-538.
31. Sneath, P. H. A., Sackin, M. J. & Ambler, R. P. (1975). Detecting evolutionary incompatibilities from protein sequences. Syst Zool 24, 311-332.
32. Teycheney, P.-Y., Laboureau, N., Iskra-Caruana, M.-L. & Candresse, T. (2005). High genetic variability and evidence for plant-to-plant transfer of Banana mild mosaic virus. J Gen Virol 86, 3179-3187.
33. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
34. Turturo, C., Saldarelli, P., Yafeng, D., Digiaro, M. Minafra, A., Savino, V. & Martelli, G. P. (2005). Genetic variability and population structure of Grapevine leafroll-associated virus 3 isolates. J Gen Virol 86, 217-224.
35. Vaira, A. M., Accotto, G. P., Gago-Zachert, S. & 8 other authors (2004). Genus Ophiovirus. In Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses, pp. 673-679. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. London: Elsevier/ Academic Press.
36. Vigne, E., Bergdoll, M., Guyader, S. & Fuchs, M. (2004). Population structure and genetic variability within isolates of Grapevine fanleaf virus from a naturally infected vineyard in France: evidence for mixed infection and recombination. J Gen Virol 85, 2435-2445.
37. Vives, M. C., Rubio, L., Galipienso, L., Navarro, L., Moreno, P. & Guerri, P. (2002). Low genetic variation between isolates of Citrus leaf blotch virus from different host species and of different geographical origins. J Gen Virol 83, 2587-2591.