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Volumn 86, Issue 1, 2005, Pages 217-224

Genetic variability and population structure of Grapevine leafroll-associated virus 3 isolates

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; HEAT SHOCK PROTEIN 70; RNA DIRECTED RNA POLYMERASE;

EID: 11444255130     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80395-0     Document Type: Article
Times cited : (86)

References (37)
  • 1
    • 0020210930 scopus 로고
    • Ultrasensitive staining of nucleic acids with silver
    • Beidler, J. L., Hilliard, P. R. & Rill, R. L. (1982). Ultrasensitive staining of nucleic acids with silver. Anal Biochem 126, 374-380.
    • (1982) Anal. Biochem. , vol.126 , pp. 374-380
    • Beidler, J.L.1    Hilliard, P.R.2    Rill, R.L.3
  • 2
    • 0032408626 scopus 로고    scopus 로고
    • Contribution of Taq polymerase-induced errors to the estimation of RNA virus diversity
    • Bracho, M. A., Moya, A. & Barrio, E. (1998). Contribution of Taq polymerase-induced errors to the estimation of RNA virus diversity. J Gen Virol 79, 2921-2928.
    • (1998) J. Gen. Virol. , vol.79 , pp. 2921-2928
    • Bracho, M.A.1    Moya, A.2    Barrio, E.3
  • 3
    • 0031135337 scopus 로고    scopus 로고
    • Recombinant DNA sequences generated by PCR amplification
    • Bradley, R. D. & Hillis, D. M. (1997). Recombinant DNA sequences generated by PCR amplification. Mol Biol Evol 14, 592-593.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 592-593
    • Bradley, R.D.1    Hillis, D.M.2
  • 4
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haerbeli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haerbeli, P.2    Smithies, O.3
  • 5
    • 4444350909 scopus 로고    scopus 로고
    • Partial characterization of an isolate of grapevine leafroll associated virus 3 in grape virus 3
    • Fajardo, T. V. M., Kuhn, G. B., Eiras, M. & Nickel, O. (2001). Partial characterization of an isolate of grapevine leafroll associated virus 3 in grape virus 3. Fitopatol Bras 26, 505-511.
    • (2001) Fitopatol. Bras. , vol.26 , pp. 505-511
    • Fajardo, T.V.M.1    Kuhn, G.B.2    Eiras, M.3    Nickel, O.4
  • 6
    • 0002389587 scopus 로고    scopus 로고
    • Polyvalent detection of fruit tree tricho, capillo and foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR)
    • Foissac, X., Svanella-Dumas, L., Dulucq, M. J., Candresse, T. & Gentit, P. (2000). Polyvalent detection of fruit tree tricho, capillo and foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR). Acta Hort 550, 37-44.
    • (2000) Acta Hort. , vol.550 , pp. 37-44
    • Foissac, X.1    Svanella-Dumas, L.2    Dulucq, M.J.3    Candresse, T.4    Gentit, P.5
  • 7
    • 0034798786 scopus 로고    scopus 로고
    • Variability and genetic structure of plant virus populations
    • Garcia-Arenal, F., Fraile, A. & Malpica, J. M. (2001). Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39, 157-186.
    • (2001) Annu. Rev. Phytopathol. , vol.39 , pp. 157-186
    • Garcia-Arenal, F.1    Fraile, A.2    Malpica, J.M.3
  • 11
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro. New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 12
    • 0033737306 scopus 로고    scopus 로고
    • Genetic diversity and evolution of closteroviruses
    • Karasev, A. V. (2000). Genetic diversity and evolution of closteroviruses. Annu Rev Phytopathol 38, 293-324.
    • (2000) Annu. Rev. Phytopathol. , vol.38 , pp. 293-324
    • Karasev, A.V.1
  • 13
    • 0033672743 scopus 로고    scopus 로고
    • Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates
    • Kong, P., Rubio, L., Polek, M. & Falk, B. W. (2000). Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates. Virus Genes 21, 139-145.
    • (2000) Virus Genes , vol.21 , pp. 139-145
    • Kong, P.1    Rubio, L.2    Polek, M.3    Falk, B.W.4
  • 14
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetic analysis software
    • Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001) MEGA2: molecular evolutionary genetic analysis software. Bioinformatics 17, 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 15
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li, W.-H. (1993). Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 36, 96-99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.-H.1
  • 16
    • 0037234755 scopus 로고    scopus 로고
    • Genetic diversity and biological variation among California isolates of Cucumber mosaic virus
    • Lin, H.-X., Rubio, L., Smythe, A., Jiminez, M. & Falk, B. W. (2003). Genetic diversity and biological variation among California isolates of Cucumber mosaic virus. J Gen Virol 84, 249-258.
    • (2003) J. Gen. Virol. , vol.84 , pp. 249-258
    • Lin, H.-X.1    Rubio, L.2    Smythe, A.3    Jiminez, M.4    Falk, B.W.5
  • 17
    • 0030971306 scopus 로고    scopus 로고
    • The coat protein gene of grapevine leafroll associated closterovirus-3: Cloning, nucleotide sequencing and expression in transgenic plants
    • Ling, K.-S., Zhu, H.-Y., Alvizo, H., Hu, J. S., Drong, R. F., Slightom, J. L. & Gonsalves, D. (1997). The coat protein gene of grapevine leafroll associated closterovirus-3: cloning, nucleotide sequencing and expression in transgenic plants. Arch Virol 142 1101-1116.
    • (1997) Arch. Virol. , vol.142 , pp. 1101-1116
    • Ling, K.-S.1    Zhu, H.-Y.2    Alvizo, H.3    Hu, J.S.4    Drong, R.F.5    Slightom, J.L.6    Gonsalves, D.7
  • 18
    • 0031921314 scopus 로고    scopus 로고
    • Nucleotide sequence of the 3′-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus
    • Ling, K.-S., Zhu, H.-Y., Drong, R. F., Slightom, J. L., McFerson, J. R. & Gonsalves, D. (1998). Nucleotide sequence of the 3′-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus. J Gen Virol 79, 1299-1307.
    • (1998) J. Gen. Virol. , vol.79 , pp. 1299-1307
    • Ling, K.-S.1    Zhu, H.-Y.2    Drong, R.F.3    Slightom, J.L.4    McFerson, J.R.5    Gonsalves, D.6
  • 20
    • 0025289181 scopus 로고
    • The analysis of population survey data on DNA sequence variation
    • Lynch, M. & Crease, T. J. (1990). The analysis of population survey data on DNA sequence variation. Mol Biol Evol 7, 377-394.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 377-394
    • Lynch, M.1    Crease, T.J.2
  • 22
    • 0036399911 scopus 로고    scopus 로고
    • The family Closteroviridae revised
    • 13 other authors
    • Martelli, G. P., Agranovsky, A. A., Bar-Joseph, M. & 13 other authors (2002). The family Closteroviridae revised. Arch Virol 147, 2039-2044.
    • (2002) Arch. Virol. , vol.147 , pp. 2039-2044
    • Martelli, G.P.1    Agranovsky, A.A.2    Bar-Joseph, M.3
  • 23
    • 0035674401 scopus 로고    scopus 로고
    • Mechanisms of retroviral recombination
    • Negroni, M. & Buc, H. (2001). Mechanisms of retroviral recombination. Annu Rev Genet 35, 275-302.
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 275-302
    • Negroni, M.1    Buc, H.2
  • 24
    • 0024756969 scopus 로고
    • Rapid and sensitive detection of point mutations and genetic polymorphisms using the polymerase chain reaction
    • Orita, M., Suzuki, T., Sekiya, T. & Hayashi, K. (1989). Rapid and sensitive detection of point mutations and genetic polymorphisms using the polymerase chain reaction. Genomics 5 874-879.
    • (1989) Genomics , vol.5 , pp. 874-879
    • Orita, M.1    Suzuki, T.2    Sekiya, T.3    Hayashi, K.4
  • 25
    • 0032960609 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism (SSCP) analysis as a tool for viroid characterisation
    • Palacio, A. & Duran-Vila, N. (1999). Single-strand conformation polymorphism (SSCP) analysis as a tool for viroid characterisation. J Virol Methods 77, 27-36.
    • (1999) J. Virol. Methods , vol.77 , pp. 27-36
    • Palacio, A.1    Duran-Vila, N.2
  • 26
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy genes: Rates and interdependence between the genes
    • Pamilo, P. & Bianchi, N. O. (1993). Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol Biol Evol 10, 271-281.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 27
    • 9444293764 scopus 로고
    • Maladies de l'enroulement et bois strié de la vigne: Analyse microscopique et sérologique
    • (in French)
    • Rosciglione, B. & Gugerli, P. (1986). Maladies de l'enroulement et bois strié de la vigne: analyse microscopique et sérologique. Rev Suisse Vitic Arboric Hortic 18, 207-211 (in French).
    • (1986) Rev. Suisse Vitic. Arboric. Hortic. , vol.18 , pp. 207-211
    • Rosciglione, B.1    Gugerli, P.2
  • 28
    • 0032797372 scopus 로고    scopus 로고
    • Geographic distribution and molecular variation of isolates of three whitefly-borne closteroviruses of cucurbits: Lettuce infectious yellows virus, cucurbit yellow stunting disorder virus, and beet pseudo-yellows virus
    • Rubio, L., Soong, J., Kao, J. & Falk B. W. (1999). Geographic distribution and molecular variation of isolates of three whitefly-borne closteroviruses of cucurbits: lettuce infectious yellows virus, cucurbit yellow stunting disorder virus, and beet pseudo-yellows virus. Phytopathology 89, 707-711.
    • (1999) Phytopathology , vol.89 , pp. 707-711
    • Rubio, L.1    Soong, J.2    Kao, J.3    Falk, B.W.4
  • 29
    • 0034864956 scopus 로고    scopus 로고
    • Genetic variation of Citrus tristeza virus isolates from California and Spain: Evidence for mixed infections and recombination
    • Rubio, L., Ayllón, M. A., Kong, P., Fernández, A., Polek, M., Guerri, J., Moreno, P. & Falk B. W. (2001). Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination. J Virol 75, 8054-8062.
    • (2001) J. Virol. , vol.75 , pp. 8054-8062
    • Rubio, L.1    Ayllón, M.A.2    Kong, P.3    Fernández, A.4    Polek, M.5    Guerri, J.6    Moreno, P.7    Falk, B.W.8
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0032443889 scopus 로고    scopus 로고
    • Use of degenerate primers in a RT-PCR assay for the identification and analysis of some filamentous viruses, with special reference to clostero- and vitiviruses of the grapevine
    • Saldarelli, P., Rowhani, A., Routh, G., Minafra, A. & Digiaro, M. (1998). Use of degenerate primers in a RT-PCR assay for the identification and analysis of some filamentous viruses, with special reference to clostero- and vitiviruses of the grapevine. Eur J Plant Pathol 104, 945-950.
    • (1998) Eur. J. Plant Pathol. , vol.104 , pp. 945-950
    • Saldarelli, P.1    Rowhani, A.2    Routh, G.3    Minafra, A.4    Digiaro, M.5
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: A graphical method for detecting genetic recombinations in homologous sequences
    • Weiller, G. F. (1998). Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol Biol Evol 15, 326-335.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 326-335
    • Weiller, G.F.1


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