-
2
-
-
0037133671
-
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
-
AKASHI, H. & GOJOBORI, T. (2002). Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proceedings of the National Academy of Sciences, USA 99, 3695-3700.
-
(2002)
Proceedings of the National Academy of Sciences, USA
, vol.99
, pp. 3695-3700
-
-
Akashi, H.1
Gojobori, T.2
-
4
-
-
0027993601
-
Evolution of codon usage and base contents in kinetoplastid protozoans
-
ALVAREZ, F., ROBELLO, C. & VIGNALI, M. (1994). Evolution of codon usage and base contents in kinetoplastid protozoans. Molecular Biology and Evolution 11, 790-802.
-
(1994)
Molecular Biology and Evolution
, vol.11
, pp. 790-802
-
-
Alvarez, F.1
Robello, C.2
Vignali, M.3
-
5
-
-
0025297285
-
Codon preferences in free-living microorganisms
-
ANDERSSON, S. G. & KURLAND, C. G. (1990). Codon preferences in free-living microorganisms. Microbiological Reviews 54, 198-210.
-
(1990)
Microbiological Reviews
, vol.54
, pp. 198-210
-
-
Andersson, S.G.1
Kurland, C.G.2
-
6
-
-
0037246674
-
PlasmoDB: The Plasmodium genome resource. A database integrating experimental and computational data
-
BAHL, A., BRUNK, B., CRABTREE, J., FRAUNHOLZ, M. J., GAJRIA, B., GRANT, G. R., GINSBURG, H., GUPTA, D., KISSINGER, J. C., LABO, P., LI, L., MAILMAN, M. D., MILGRAM, A. J., PEARSON, D. S., ROOS, D. S., SCHUG, J., STOECKERT, C. J. Jr. & WHETZEL, P. (2003). PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Research 31, 212-215.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 212-215
-
-
Bahl, A.1
Brunk, B.2
Crabtree, J.3
Fraunholz, M.J.4
Gajria, B.5
Grant, G.R.6
Ginsburg, H.7
Gupta, D.8
Kissinger, J.C.9
Labo, P.10
Li, L.11
Mailman, M.D.12
Milgram, A.J.13
Pearson, D.S.14
Roos, D.S.15
Schug, J.16
Stoeckert Jr., C.J.17
Whetzel, P.18
-
7
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
BULMER, M. (1991). The selection-mutation-drift theory of synonymous codon usage. Genetics 129, 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
8
-
-
0037274714
-
In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein
-
CARLINI, D. B. & STEPHAN, W. (2003). In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein. Genetics 163, 239-243.
-
(2003)
Genetics
, vol.163
, pp. 239-243
-
-
Carlini, D.B.1
Stephan, W.2
-
9
-
-
0034666040
-
Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
-
COGHLAN, A. & WOLFE, K. H. (2000). Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 16, 1131-1145.
-
(2000)
Yeast
, vol.16
, pp. 1131-1145
-
-
Coghlan, A.1
Wolfe, K.H.2
-
10
-
-
0036295371
-
Silent mutations affect in vivo protein folding in Escherichia coli
-
CORTAZZO, P., CERVENANSKY, C., MARIN, M., REISS, C., EHRLICH, R. & DEANA, A. (2002). Silent mutations affect in vivo protein folding in Escherichia coli. Biochemical and Biophysical Research Communications 293, 537-541.
-
(2002)
Biochemical and Biophysical Research Communications
, vol.293
, pp. 537-541
-
-
Cortazzo, P.1
Cervenansky, C.2
Marin, M.3
Reiss, C.4
Ehrlich, R.5
Deana, A.6
-
11
-
-
0032531941
-
Silent mutations in the Escherichia coli ompA leader peptide region strongly affect transcription and translation in vivo
-
DEANA, A., EHRLICH, R. & REISS, C. (1998). Silent mutations in the Escherichia coli ompA leader peptide region strongly affect transcription and translation in vivo. Nucleic Acids Research 26, 4778-4782.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 4778-4782
-
-
Deana, A.1
Ehrlich, R.2
Reiss, C.3
-
12
-
-
0037320652
-
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
-
DUAN, J., WAINWRIGHT, M. S., COMERON, J. M., SAITOU, N., SANDERS, A. R., GELERNTER, J. & GEJMAN, P. V. (2003). Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Human Molecular Genetics 12, 205-216.
-
(2003)
Human Molecular Genetics
, vol.12
, pp. 205-216
-
-
Duan, J.1
Wainwright, M.S.2
Comeron, J.M.3
Saitou, N.4
Sanders, A.R.5
Gelernter, J.6
Gejman, P.V.7
-
13
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
DURET, L. & MOUCHIROUD, D. (1999). Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proceedings of the National Academy of Sciences, USA 96, 4482-4487.
-
(1999)
Proceedings of the National Academy of Sciences, USA
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
15
-
-
0034915863
-
Evidence for translational selection in codon usage in Echinococcus spp.
-
FERNÁNDEZ, V., ZAVALA, A. & MUSTO, H. (2001). Evidence for translational selection in codon usage in Echinococcus spp. Parasitology 123, 203-209.
-
(2001)
Parasitology
, vol.123
, pp. 203-209
-
-
Fernández, V.1
Zavala, A.2
Musto, H.3
-
16
-
-
0037015602
-
A proteomic view of the Plasmodium falciparum life cycle
-
FLORENS, L., WASHBURN, M. P., RAINE, J. D., ANTHONY, R. M., GRAINGER, M., HAYNES, J. D., MOCH, J. K., MUSTER, N., SACCI, J. B., TABB, D. L., WITNEY, A. A., WOLTERS, D., WU, Y., GARDNER, M. J., HOLDER, A. A., SINDEN, R. E., YATES, J. R. & CARUCCI, D. J. (2002). A proteomic view of the Plasmodium falciparum life cycle. Nature, London 419, 520-526.
-
(2002)
Nature, London
, vol.419
, pp. 520-526
-
-
Florens, L.1
Washburn, M.P.2
Raine, J.D.3
Anthony, R.M.4
Grainger, M.5
Haynes, J.D.6
Moch, J.K.7
Muster, N.8
Sacci, J.B.9
Tabb, D.L.10
Witney, A.A.11
Wolters, D.12
Wu, Y.13
Gardner, M.J.14
Holder, A.A.15
Sinden, R.E.16
Yates, J.R.17
Carucci, D.J.18
-
17
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
GARDNER, M. J., HALL, N., FUNG, E., WHITE, O., BERRIMAN, M., HYMAN, R. W., CARLTON, J. M., PAIN, A., NELSON, K. E., BOWMAN, S., PAULSEN, I. T., JAMES, K., EISEN, J. A., RUTHERFORD, K., SALZBERG, S. L., CRAIG, A., KYES, S., CHAN, M. S., NENE, V., SHALLOM, S. J., SUH, B., PETERSON, J., ANGIUOLI, S., PERTEA, M., ALLEN, J., SELENGUT, J., HAFT, D., MATHER, M. W., VAIDYA, A. B., MARTIN, D. M., FAIRLAMB, A. H., FRAUNHOLZ, M. J., ROOS, D. S., RALPH, S. A., McFADDEN, G. I., CUMMINGS, L. M., SUBRAMANIAN, G. M., MUNGALL, C., VENTER, J. C., CARUCCI, D. J., HOFFMAN, S. L., NEWBOLD, C., DAVIS, R. W., FRASER, C. M. & BARRELL, B. (2002). Genome sequence of the human malaria parasite Plasmodium falciparum. Nature, London 419, 498-511.
-
(2002)
Nature, London
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
Carlton, J.M.7
Pain, A.8
Nelson, K.E.9
Bowman, S.10
Paulsen, I.T.11
James, K.12
Eisen, J.A.13
Rutherford, K.14
Salzberg, S.L.15
Craig, A.16
Kyes, S.17
Chan, M.S.18
Nene, V.19
Shallom, S.J.20
Suh, B.21
Peterson, J.22
Angiuoli, S.23
Pertea, M.24
Allen, J.25
Selengut, J.26
Haft, D.27
Mather, M.W.28
Vaidya, A.B.29
Martin, D.M.30
Fairlamb, A.H.31
Fraunholz, M.J.32
Roos, D.S.33
Ralph, S.A.34
McFadden, G.I.35
Cummings, L.M.36
Subramanian, G.M.37
Mungall, C.38
Venter, J.C.39
Carucci, D.J.40
Hoffman, S.L.41
Newbold, C.42
Davis, R.W.43
Fraser, C.M.44
Barrell, B.45
more..
-
18
-
-
0020149711
-
The establishment of genomic DNA libraries for the human malaria parasite Plasmodium falciparum and identification of individual clones by hybridisation
-
GOMAN, M., LANGSLEY, G., HYDE, J. E., YANKOVSKY, N. K., ZOLG, J. W. & SCAIFE, J. G. (1982). The establishment of genomic DNA libraries for the human malaria parasite Plasmodium falciparum and identification of individual clones by hybridisation. Molecular and Biochemical Parasitology 5, 391-400.
-
(1982)
Molecular and Biochemical Parasitology
, vol.5
, pp. 391-400
-
-
Goman, M.1
Langsley, G.2
Hyde, J.E.3
Yankovsky, N.K.4
Zolg, J.W.5
Scaife, J.G.6
-
19
-
-
0019519371
-
Codon catalog usage is a genome strategy modulated for gene expressivity
-
GRANTHAM, R., GAUTIER, C., GOUY, M., JACOBZONE, M. & MERCIER, R. (1981). Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Research 9, r43-r74.
-
(1981)
Nucleic Acids Research
, vol.9
-
-
Grantham, R.1
Gautier, C.2
Gouy, M.3
Jacobzone, M.4
Mercier, R.5
-
21
-
-
0023582023
-
Anomalous dinucleotide frequencies in both coding and non-coding regions from the genome of the human malaria parasite Plasmodium falciparum
-
HYDE, J. E. & SIMS, P. F. (1987). Anomalous dinucleotide frequencies in both coding and non-coding regions from the genome of the human malaria parasite Plasmodium falciparum. Gene 61, 177-187.
-
(1987)
Gene
, vol.61
, pp. 177-187
-
-
Hyde, J.E.1
Sims, P.F.2
-
22
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
KANAYA, S., YAMADA, Y., KUDO, Y. & IKEMURA, T. (1999). Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238, 143-155.
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
23
-
-
0021592646
-
Evolutionary relatedness of Plasmodium species as determined by the structure of DNA
-
McCUTCHAN, T. F., DAME, J. B., MILLER, L. H. & BARNWELL, J. (1984). Evolutionary relatedness of Plasmodium species as determined by the structure of DNA. Science 225, 808-811.
-
(1984)
Science
, vol.225
, pp. 808-811
-
-
McCutchan, T.F.1
Dame, J.B.2
Miller, L.H.3
Barnwell, J.4
-
24
-
-
0031267538
-
Compositional constraints in the extremely GC-poor genome of Plasmodium falciparum
-
MUSTO, H., CACCIÒ, S., RODRIGUEZ-MASEDA, H. & BERNARDI, G. (1997). Compositional constraints in the extremely GC-poor genome of Plasmodium falciparum. Memorias do Instituto Oswaldo Cruz 92, 835-841.
-
(1997)
Memorias do Instituto Oswaldo Cruz
, vol.92
, pp. 835-841
-
-
Musto, H.1
Cacciò, S.2
Rodriguez-Maseda, H.3
Bernardi, G.4
-
25
-
-
0033050538
-
Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: Compositional constraints and translational selection
-
MUSTO, H., ROMERO, H., ZAVALA, A., JABBARI, K. & BERNARDI, G. (1999). Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: compositional constraints and translational selection. Journal of Molecular Evolution 49, 27-35.
-
(1999)
Journal of Molecular Evolution
, vol.49
, pp. 27-35
-
-
Musto, H.1
Romero, H.2
Zavala, A.3
Jabbari, K.4
Bernardi, G.5
-
26
-
-
0028836489
-
Compositional properties of nuclear genes from Plasmodium falciparum
-
MUSTO, H., RODRIGUEZ-MASEDA, H. & BERNARDI, G. (1995). Compositional properties of nuclear genes from Plasmodium falciparum. Gene 152, 127-132.
-
(1995)
Gene
, vol.152
, pp. 127-132
-
-
Musto, H.1
Rodriguez-Maseda, H.2
Bernardi, G.3
-
27
-
-
0038705152
-
Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum
-
MUSTO, H., ROMERO, H. & ZAVALA, A. (2003). Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum. Microbiology 149, 855-863.
-
(2003)
Microbiology
, vol.149
, pp. 855-863
-
-
Musto, H.1
Romero, H.2
Zavala, A.3
-
28
-
-
0037109119
-
Use and misuse of correspondence analysis in codon usage studies
-
PERRIÈRE, G. & THIOULOUSE, J. (2001). Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Research 30, 4548-4555.
-
(2001)
Nucleic Acids Research
, vol.30
, pp. 4548-4555
-
-
Perrière, G.1
Thioulouse, J.2
-
29
-
-
0020026684
-
The genome of Plasmodium falciparum. I: DNA base composition
-
POLLACK, Y., KATZEN, A. L., SPIRA, D. T. & GOLENSER, J. (1982). The genome of Plasmodium falciparum. I: DNA base composition. Nucleic Acids Research 10, 539-546.
-
(1982)
Nucleic Acids Research
, vol.10
, pp. 539-546
-
-
Pollack, Y.1
Katzen, A.L.2
Spira, D.T.3
Golenser, J.4
-
30
-
-
0033959348
-
Compositional pressure and translational selection determine codon usage in the extremely GC-poor unicellular eukaryote Entamoeba histolytica
-
ROMERO, H., ZAVALA, A. & MUSTO, H. (2000). Compositional pressure and translational selection determine codon usage in the extremely GC-poor unicellular eukaryote Entamoeba histolytica. Gene 242, 307-311.
-
(2000)
Gene
, vol.242
, pp. 307-311
-
-
Romero, H.1
Zavala, A.2
Musto, H.3
-
32
-
-
0024967181
-
Codon usage and gene expression level in Dictyostelium discoideum: Highly expressed genes do 'prefer' optimal codons
-
SHARP, P. M. & DEVINE, K. M. (1989). Codon usage and gene expression level in Dictyostelium discoideum: highly expressed genes do 'prefer' optimal codons. Nucleic Acids Research 17, 5029-5039.
-
(1989)
Nucleic Acids Research
, vol.17
, pp. 5029-5039
-
-
Sharp, P.M.1
Devine, K.M.2
-
33
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
SHARP, P. M. & LI, W. H. (1986). An evolutionary perspective on synonymous codon usage in unicellular organisms. Journal of Molecular Evolution 24, 28-38.
-
(1986)
Journal of Molecular Evolution
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.H.2
-
35
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
SHARP, P. M., TUOHY, T. M. & MOSURSKI, K. R. (1986). Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Research 14, 5125-5143.
-
(1986)
Nucleic Acids Research
, vol.14
, pp. 5125-5143
-
-
Sharp, P.M.1
Tuohy, T.M.2
Mosurski, K.R.3
-
36
-
-
0029654101
-
DNA sequence evolution: The sounds of silence
-
SHARP, P. M., AVEROF, M., LLOYD, A. T., MATASSI, G. & PEDEN, J. F. (1995). DNA sequence evolution: the sounds of silence. Philosophical Transactions of the Royal Society of London, B 349, 241-247.
-
(1995)
Philosophical Transactions of the Royal Society of London, B
, vol.349
, pp. 241-247
-
-
Sharp, P.M.1
Averof, M.2
Lloyd, A.T.3
Matassi, G.4
Peden, J.F.5
-
37
-
-
0023652058
-
Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
-
SHIELDS, D. C. & SHARP, P. M. (1987). Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Research 15, 8023-8040.
-
(1987)
Nucleic Acids Research
, vol.15
, pp. 8023-8040
-
-
Shields, D.C.1
Sharp, P.M.2
-
38
-
-
0037473220
-
Codon optimization of Caenorhabditis elegans GluCl ion channel genes for mammalian cells dramatically improves expression levels
-
SLIMKO, E. M. & LESTER, H. A. (2003). Codon optimization of Caenorhabditis elegans GluCl ion channel genes for mammalian cells dramatically improves expression levels. Journal of Neuroscience Methods 124, 75-81.
-
(2003)
Journal of Neuroscience Methods
, vol.124
, pp. 75-81
-
-
Slimko, E.M.1
Lester, H.A.2
-
39
-
-
0023263288
-
Analysis of sequences from the extremely a + T-rich genome of Plasmodium falciparum
-
WEBER, J. L. (1987). Analysis of sequences from the extremely A + T-rich genome of Plasmodium falciparum. Gene 52, 103-109.
-
(1987)
Gene
, vol.52
, pp. 103-109
-
-
Weber, J.L.1
|