Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori

Applied and Environmental Microbiology

Volumn 72, Issue 9, 2006, Pages 5908-5914

  Dailidiene, Daiva ^a   Dailide, Giedrius ^a   Kersulyte, Dangeruta ^a   Berg, Douglas E ^a,b  

^a WASHINGTON UNIVERSITY   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; DNA SEQUENCES; DRUG THERAPY; GENETIC ENGINEERING;

DRUG RESISTANCE; EVOLUTIONARY ANALYSES; HOMOLOGOUS RECOMBINATION; STREPTOMYCIN SUSCEPTIBILITY;

BACTERIA;

ERYTHROMYCIN; STREPTOMYCIN;

ANTIBIOTIC RESISTANCE; BACTERIUM; DNA; GENE EXPRESSION; GENETIC ANALYSIS; GENOME; RECOMBINATION;

ALLELE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CAMPYLOBACTER JEJUNI; CONTROLLED STUDY; GENE CASSETTE; GENE DELETION; GENE INSERTION; GENE LOCUS; GENETIC MANIPULATION; GENETIC RESISTANCE; GENETIC TRANSFORMATION; HELICOBACTER PYLORI; NONHUMAN; NUCLEOTIDE SEQUENCE;

ALLELES; BASE SEQUENCE; CAMPYLOBACTER JEJUNI; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; GENES, BACTERIAL; GENETIC TECHNIQUES; HELICOBACTER PYLORI; MUTAGENESIS, INSERTIONAL; RECOMBINATION, GENETIC; STREPTOMYCIN; TRANSFORMATION, GENETIC;

CAMPYLOBACTER JEJUNI; HELICOBACTER PYLORI;

EID: 33748804912     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01135-06     Document Type: Article

References (34)

1. Akada, J. K., K. Ogura, D. Dailidiene, G. Dailide, J. M. Cheverud, and D. E. Berg. 2003. Helicobacter pylori tissue tropism: mouse-colonizing strains can target different gastric niches. Microbiology 149:1901-1909.
2. Albert, T. J., D. Dailidiene, G. Dailide, J. E. Norton, A. Kalia, T. A. Richmond, M. Molla, J. Singh, R. D. Green, and D. E. Berg. 2005. Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori. Nat. Methods 2:951-953.
3. Amieva, M. R., R. Vogelmann, A. Covacci, L. S. Tompkins, W. J. Nelson, and S. Falkow. 2003. Disruption of the epithelial apical-junctional complex by Helicobacter pylori CagA. Science 300:1430-1434.
4. Amyes, S. G., and J. T. Smith. 1975. Thymineless mutants and their resistance to trimethoprim. J. Antimicrob. Chemother. 1:85-89.
5. Blomfield, I. C., V. Vaughn, R. F. Rest, and B. I. Eisenstein. 1991. Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon. Mol. Microbiol. 5:1447-1457.
6. Chalker, A. F., H. W. Minehart, N. J. Hughes, K. K. Koretke, M. A. Lonetto, K. K. Brinkman, P. V. Warren, A. Lupas, M. J. Stanhope, J. R. Brown, and P. S. Hoffman. 2001. Systematic identification of selective essential genes in Helicobacter pylori by genome prioritization and allelic replacement mutagenesis. J. Bacteriol. 183:1259-1268.
7. Carter, A. P., W. M. Clemons, D. E. Brodersen, R. J. Morgan-Warren, B. T. Wimberly, and V. Ramakrishnan. 2000. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407:340-348.
8. Copass, M., G. Grandi, and R. Rappuoli. 1997. Introduction of unmarked mutations in the Helicobacter pylori vacA gene with a sucrose sensitivity marker. Infect. Immun. 65:1949-1952.
9. Davies, J. E. 1997. Origins, acquisition and dissemination of antibiotic resistance determinants. Ciba Found. Symp. 207:15-35.
10. Davis, B. D. 1987. Mechanism of bactericidal action of aminoglycosides. Microbiol. Rev. 51:341-350.
11. Eisen, J. A. 1998. A phylogenomic study of the MutS family of proteins. Nucleic Acids Res. 26:4291-4300.
12. Ermak, T. H., P. J. Giannasca, R. Nichols, G. A. Myers, J. Nedrud, R. Weltzin, C. K. Lee, H. Kleanthous, and T. P. Monath. 1998. Immunization of mice with urease vaccine affords protection against Helicobacter pylori infection in the absence of antibodies and is mediated by MHC class II-restricted responses. J. Exp. Med. 188:2277-2288.
13. Fischer, W., D. Schwan, E. Gerland, G. E. Erlenfeld, S. Odenbreit, and R. Haas. 1999. A plasmid-based vector system for the cloning and expression of Helicobacter pylori genes encoding outer membrane proteins. Mol. Gen. Genet. 262:501-507.
14. Gregory, S. T., J. H. Cate, and A. E. Dahlberg. 2001. Streptomycin-resistant and streptomycin-dependent mutants of the extreme thermophile Thermus thermophilus. J. Mol. Biol. 309:333-338.
15. Gromadski, K. B., and M. V. Rodnina. 2004. Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome. Nat. Struct. Mol. Biol. 11:316-322.
16. Lederberg, J. 1951. Streptomycin resistance: a genetically recessive mutation. J. Bacteriol. 61:549-550.
17. Lee, A., J. O'Rourke, M. C. De Ungria, B. Robertson, G. Daskalopoulos, and M. F. Dixon. 1997. A standardized mouse model of Helicobacter pylori infection: introducing the Sydney strain. Gastroenterology 112:1386-1397.
18. Levin, I., M. Giladi, N. Altman-Price, R. Ortenberg, and M. Mevarech. 2004. An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea. Mol. Microbiol. 54:1307-1318.
19. Maisnier-Patin, S., O. G. Berg, L. Liljas, and D. I. Andersson. 2002. Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol. Microbiol. 46:355-366.
20. Matic, I., F. Taddei, and M. Radman. 1996. Genetic barriers among bacteria. Trends Microbiol. 4:69-72.
21. Mobley, H. L. T., G. L. Mendz, and S. L. Hazell (ed.). 2001. Helicobacter pylori. ASM Press, Washington, D.C.
22. Ogle, J. M., A. P. Carter, and V. Ramakrishnan. 2003. Insights into the decoding mechanism from recent ribosome structures. Trends Biochem. Sci. 28:259-266.
23. Panthel, K., P. Dietz, R. Haas, and D. Beier. 2003. Two-component systems of Helicobacter pylori contribute to virulence in a mouse infection model. Infect. Immun. 71:5381-5385.
24. Peske, F., A. Savelsbergh, V. I. Katunin, M. V. Rodnina, and W. Wintermeyer. 2004. Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation. J. Mol. Biol. 343:1183-1194.
25. Russell, C. B., and F. W. Dahlquist. 1989. Exchange of chromosomal and plasmid alleles in Escherichia coli by selection for loss of a dominant antibiotic sensitivity marker. J. Bacteriol. 171:2614-2618.
26. Schrag, S. J., Perrot, V., and B. R. Levin. 1997. Adaptation to the fitness costs of antibiotic resistance in Escherichia coli. Proc. Biol. Sci. 264:1287-1291.
27. Steinmetz, M., D. Le Coq, H. H. Djemia, and P. Gay. 1983. Genetic analysis of sacB, the structural gene of a secreted enzyme, levansucrase of Bacillus subtilis Marburg. Mol. Gen. Genet. 191:138-144.
28. Suto, H., M. Zhang, and D. E. Berg. 2005. Age-dependent changes in susceptibility of suckling mice to individual strains of Helicobacter pylori. Infect. Immun. 73:1232-1234.
29. Tan, S., and D. E. Berg. 2004. Motility of urease-deficient derivatives of Helicobacter pylori. J. Bacteriol. 186:885-888.
30. Tan, S., C. D. Fraley, M. Zhang, D. Dailidiene, A. Kornberg, and D. E. Berg. 2005. Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori. J. Bacteriol. 187:7687-7695.
31. Tomb, J. F., O. White, A. R. Kerlavage, R. A. Clayton, G. G. Sutton, R. D. Fleischmann, K. A. Ketchum, H. P. Klenk, S. Gill, B. A. Dougherty, K. Nelson, J. Quackenbush, L. Zhou, E. F. Kirkness, S. Peterson, B. Loftus, D. Richardson, R. Dodson, H. G. Khalak, A. Glodek, K. McKenney, L. M. Fitzegerald, N. Lee, M. D. Adams, E. K. Hickey, D. E. Berg, J. D. Gocayne, T. R. Utterback, J. D. Peterson, J. M. Kelley, M. D. Cotton, J. M. Weidman, C. Fujii, C. Bowman, L. Watthey, E. Wallin, W. S. Hayes, M. Borodovsky, P. D. Karp, H. O. Smith, C. M. Fraser, and J. C. Venter. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539-547.
32. Torii, N., T. Nozaki, M. Masutani, H. Nakagama, T. Sugiyama, D. Saito, M. Asaka, T. Sugimura, and K. Miki. 2003. Spontaneous mutations in the Helicobacter pylori rpsL gene. Mutat. Res. 535:141-145.
33. Wang, G., R. W. Blakesley, D. E. Berg, and C. M. Berg. 1993. pDUAL: a transposon-based cosmid cloning vector for generating nested deletions and DNA sequencing templates in vivo. Proc. Natl. Acad. Sci. USA 90:7874-7878.
34. Wang, G., X. Xu, J. M. Chen, D. E. Berg, and C. M. Berg. 1994. Inversions and deletions generated by a mini-gamma delta (Tn1000) transposon. J. Bacteriol. 176:1332-1338.