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Volumn 7, Issue , 2006, Pages

Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE RESONANCE THEORY; BIOLOGICAL CHARACTERISTIC; CORRELATION ANALYSIS; DNA MICROARRAY ANALYSIS; GENE EXPRESSION PROFILES; GENE EXPRESSION PROFILING; SIGNIFICANCE ANALYSIS OF MICROARRAYS; THERAPEUTIC TARGETS;

EID: 33748767667     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-399     Document Type: Article
Times cited : (25)

References (47)
  • 1
    • 0036954967 scopus 로고    scopus 로고
    • Acute lymphoblastic leukaemia: Diagnosis and classification
    • Kebriaei P, Anastasi J, Larson RA: Acute lymphoblastic leukaemia: diagnosis and classification. Best Pract Res Clin Haematol 2002, 15(4):597-621.
    • (2002) Best Pract Res Clin Haematol , vol.15 , Issue.4 , pp. 597-621
    • Kebriaei, P.1    Anastasi, J.2    Larson, R.A.3
  • 2
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95(25):14863-14868.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 3
    • 0036678783 scopus 로고    scopus 로고
    • Analysis of expression profile using fuzzy adaptive resonance theory
    • Tomida S, Hanai T, Honda H, Kobayashi T: Analysis of expression profile using fuzzy adaptive resonance theory. Bioinformatics 2002, 18(8):1073-1083.
    • (2002) Bioinformatics , vol.18 , Issue.8 , pp. 1073-1083
    • Tomida, S.1    Hanai, T.2    Honda, H.3    Kobayashi, T.4
  • 6
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I, Weston J, Barnhill S, Vapnik V: Gene selection for cancer classification using support vector machines. Mach Learning 2002, 46:389-422.
    • (2002) Mach Learning , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 7
    • 0036868316 scopus 로고    scopus 로고
    • Fuzzy neural network applied to gene expression profiling for predicting the prognosis of diffuse large B-cell lymphoma
    • Ando T, Suguro M, Hanai T, Kobayashi T, Honda H, Seto M: Fuzzy neural network applied to gene expression profiling for predicting the prognosis of diffuse large B-cell lymphoma. Jpn J Cancer Res 2002, 93(11):1207-1212.
    • (2002) Jpn J Cancer Res , vol.93 , Issue.11 , pp. 1207-1212
    • Ando, T.1    Suguro, M.2    Hanai, T.3    Kobayashi, T.4    Honda, H.5    Seto, M.6
  • 8
    • 27544438113 scopus 로고    scopus 로고
    • A new reliable cancer diagnosis method using boosted fuzzy classifier with a SWEEP operator method
    • Takahashi H, Honda H: A new reliable cancer diagnosis method using boosted fuzzy classifier with a SWEEP operator method. J Chem 2005, 38(9):763-773.
    • (2005) J Chem , vol.38 , Issue.9 , pp. 763-773
    • Takahashi, H.1    Honda, H.2
  • 9
    • 33745674976 scopus 로고    scopus 로고
    • Prediction of peptide binding to major histocompatibility complex class II molecules through use of boosted fuzzy classifier with SWEEP operator method
    • Takahashi H, Honda H: Prediction of peptide binding to major histocompatibility complex class II molecules through use of boosted fuzzy classifier with SWEEP operator method. J Biosci Bioeng 2006, 101(2):137-141.
    • (2006) J Biosci Bioeng , vol.101 , Issue.2 , pp. 137-141
    • Takahashi, H.1    Honda, H.2
  • 10
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98(9):5116-5121.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.9 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 11
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene expression
    • Tibshirani R, Hastie T, Narasimhan B, Chu G: Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci USA 2002, 99(10):6567-6572.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.10 , pp. 6567-6572
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 12
    • 13444293397 scopus 로고    scopus 로고
    • Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method
    • Takahashi H, Kobayashi T, Honda H: Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method. Bioinformatics 2005, 21(2):179-186.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 179-186
    • Takahashi, H.1    Kobayashi, T.2    Honda, H.3
  • 13
    • 0036120047 scopus 로고    scopus 로고
    • Projective ART for clustering data sets in high dimensional spaces
    • Cao Y, Wu J: Projective ART for clustering data sets in high dimensional spaces. Neural Netw 2002, 15(1):105-120.
    • (2002) Neural Netw , vol.15 , Issue.1 , pp. 105-120
    • Cao, Y.1    Wu, J.2
  • 14
    • 2442443105 scopus 로고    scopus 로고
    • Dynamics of projective adaptive resonance theory model: The foundation of PART algorithm
    • Cao Y, Wu J: Dynamics of projective adaptive resonance theory model: the foundation of PART algorithm. IEEE Trans Neural Netw 2004, 15(2):245-260.
    • (2004) IEEE Trans Neural Netw , vol.15 , Issue.2 , pp. 245-260
    • Cao, Y.1    Wu, J.2
  • 15
    • 33746365419 scopus 로고    scopus 로고
    • Lymphoma prognostication from expression profiling using a combination method of boosting and projective adaptive resonance theory
    • Takahashi H, Honda H: Lymphoma prognostication from expression profiling using a combination method of boosting and projective adaptive resonance theory. J Chem EngJpn 2006, 39(7):767-771.
    • (2006) J Chem Eng Jpn , vol.39 , Issue.7 , pp. 767-771
    • Takahashi, H.1    Honda, H.2
  • 16
    • 33746357162 scopus 로고    scopus 로고
    • Classification of intramural metastases and lymph node metastases of esophageal cancer from gene expression based on boosting and projective adaptive resonance theory
    • Takahashi H, Aoyagi K, Nakanishi Y, Sasaki H, Yoshida T, Honda H: Classification of intramural metastases and lymph node metastases of esophageal cancer from gene expression based on boosting and projective adaptive resonance theory. JBiosci Bioeng 2006, 102(1):46-52.
    • (2006) J Biosci Bioeng , vol.102 , Issue.1 , pp. 46-52
    • Takahashi, H.1    Aoyagi, K.2    Nakanishi, Y.3    Sasaki, H.4    Yoshida, T.5    Honda, H.6
  • 17
    • 12944288173 scopus 로고    scopus 로고
    • Macrophage migration inhibitory factor promotes tumor invasion and metastasis via the Rho-dependent pathway
    • Sun B, Nishihira J, Yoshiki T, Kondo M, Sato Y, Sasaki F, Todo S: Macrophage migration inhibitory factor promotes tumor invasion and metastasis via the Rho-dependent pathway. Clin Cancer Res 2005, 11(3):1050-1058.
    • (2005) Clin Cancer Res , vol.11 , Issue.3 , pp. 1050-1058
    • Sun, B.1    Nishihira, J.2    Yoshiki, T.3    Kondo, M.4    Sato, Y.5    Sasaki, F.6    Todo, S.7
  • 18
    • 22744450481 scopus 로고    scopus 로고
    • Inhibitory effect of c-Myc on p53-induced apoptosis in leukemia cells. Microarray analysis reveals defective induction of p53 target genes and upregulation of chaperone genes
    • Ceballos E, Munoz-Alonso MJ, Berwanger B, Acosta JC, Hernandez R, Krause M, Hartmann O, Eilers M, Leon J: Inhibitory effect of c-Myc on p53-induced apoptosis in leukemia cells. Microarray analysis reveals defective induction of p53 target genes and upregulation of chaperone genes. Oncogene 2005, 24(28):4559-4571.
    • (2005) Oncogene , vol.24 , Issue.28 , pp. 4559-4571
    • Ceballos, E.1    Munoz-Alonso, M.J.2    Berwanger, B.3    Acosta, J.C.4    Hernandez, R.5    Krause, M.6    Hartmann, O.7    Eilers, M.8    Leon, J.9
  • 20
    • 33746851344 scopus 로고    scopus 로고
    • Clinical significance of class III beta-tubulin expression and its predictive value for resistance to docetaxel-based chemotherapy in gastric cancer
    • Urano N, Fujiwara Y, Doki Y, Kim SJ, Miyoshi Y, Noguchi S, Miyata H, Takiguchi S, Yasuda T, Yano M, Monden M: Clinical significance of class III beta-tubulin expression and its predictive value for resistance to docetaxel-based chemotherapy in gastric cancer. Int J Oncol 2006, 28(2):375-381.
    • (2006) Int J Oncol , vol.28 , Issue.2 , pp. 375-381
    • Urano, N.1    Fujiwara, Y.2    Doki, Y.3    Kim, S.J.4    Miyoshi, Y.5    Noguchi, S.6    Miyata, H.7    Takiguchi, S.8    Yasuda, T.9    Yano, M.10    Monden, M.11
  • 21
    • 18644384743 scopus 로고    scopus 로고
    • Tissue inhibitor of metalloproteinase-3 (TIMP-3) gene is methylated in the development of esophageal adenocarcinoma: Loss of expression correlates with poor prognosis
    • Darnton SJ, Hardie LJ, Muc RS, Wild CP, Casson AG: Tissue inhibitor of metalloproteinase-3 (TIMP-3) gene is methylated in the development of esophageal adenocarcinoma: loss of expression correlates with poor prognosis. Int J Cancer 2005, 115(3):351-358.
    • (2005) Int J Cancer , vol.115 , Issue.3 , pp. 351-358
    • Darnton, S.J.1    Hardie, L.J.2    Muc, R.S.3    Wild, C.P.4    Casson, A.G.5
  • 24
    • 1542297687 scopus 로고    scopus 로고
    • Regulators of G-protein signaling 3 and 4 (RGS3, RGS4) are associated with glioma cell motility
    • Tatenhorst L, Senner V, Puttmann S, Paulus W: Regulators of G-protein signaling 3 and 4 (RGS3, RGS4) are associated with glioma cell motility. J Neuropathol Exp Neurol 2004, 63(3):210-222.
    • (2004) J Neuropathol Exp Neurol , vol.63 , Issue.3 , pp. 210-222
    • Tatenhorst, L.1    Senner, V.2    Puttmann, S.3    Paulus, W.4
  • 25
    • 0042425741 scopus 로고    scopus 로고
    • Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction
    • van den Boom J, Wolter M, Kuick R, Misek DE, Youkilis AS, Wechsler DS, Sommer C, Reifenberger G, Hanash SM: Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction. Am J Pathol 2003, 163(3):1033-1043.
    • (2003) Am J Pathol , vol.163 , Issue.3 , pp. 1033-1043
    • van den Boom, J.1    Wolter, M.2    Kuick, R.3    Misek, D.E.4    Youkilis, A.S.5    Wechsler, D.S.6    Sommer, C.7    Reifenberger, G.8    Hanash, S.M.9
  • 27
    • 32944461274 scopus 로고    scopus 로고
    • beta-Catenin status predicts a favorable outcome in childhood medulloblastoma: The United Kingdom Children's' Cancer Study Group Brain Tumour Committee
    • Ellison DW, Onilude OE, Lindsey JC, Lusher ME, Weston CL, Taylor RE, Pearson AD, Clifford SC: beta-Catenin status predicts a favorable outcome in childhood medulloblastoma: the United Kingdom Children's' Cancer Study Group Brain Tumour Committee. J Clin Oncol 2005, 23(31):7951-7957.
    • (2005) J Clin Oncol , vol.23 , Issue.31 , pp. 7951-7957
    • Ellison, D.W.1    Onilude, O.E.2    Lindsey, J.C.3    Lusher, M.E.4    Weston, C.L.5    Taylor, R.E.6    Pearson, A.D.7    Clifford, S.C.8
  • 31
    • 16844381072 scopus 로고    scopus 로고
    • Tissue inhibitor of metalloproteinase 1 is an independent predictor of prognosis in patients with nonsmall cell lung carcinoma who undergo resection with curative intent
    • Gouyer V, Conti M, Devos P, Zerimech F, Copin MC, Creme E, Wurtz A, Porte H, Huet G: Tissue inhibitor of metalloproteinase 1 is an independent predictor of prognosis in patients with nonsmall cell lung carcinoma who undergo resection with curative intent. Cancer 2005, 103(8):1676-1684.
    • (2005) Cancer , vol.103 , Issue.8 , pp. 1676-1684
    • Gouyer, V.1    Conti, M.2    Devos, P.3    Zerimech, F.4    Copin, M.C.5    Creme, E.6    Wurtz, A.7    Porte, H.8    Huet, G.9
  • 32
    • 25644448911 scopus 로고    scopus 로고
    • Matrix metallo-proteinases expression correlates with survival in patients with esophageal squamous cell carcinoma
    • Gu ZD, Li JY, Li M, Gu J, Shi XT, Ke Y, Chen KN: Matrix metallo-proteinases expression correlates with survival in patients with esophageal squamous cell carcinoma. Am J Gastroenterol 2005, 100(8):1835-1843.
    • (2005) Am J Gastroenterol , vol.100 , Issue.8 , pp. 1835-1843
    • Gu, Z.D.1    Li, J.Y.2    Li, M.3    Gu, J.4    Shi, X.T.5    Ke, Y.6    Chen, K.N.7
  • 33
    • 0141746186 scopus 로고    scopus 로고
    • Stromelysin-3 expression is an early event in human oral tumorigenesis
    • Soni S, Mathur M, Shukla NK, Deo SV, Ralhan R: Stromelysin-3 expression is an early event in human oral tumorigenesis. Int J Cancer 2003, 107(2):309-316.
    • (2003) Int J Cancer , vol.107 , Issue.2 , pp. 309-316
    • Soni, S.1    Mathur, M.2    Shukla, N.K.3    Deo, S.V.4    Ralhan, R.5
  • 35
    • 21744445069 scopus 로고    scopus 로고
    • Heat shock proteins in cancer: Diagnostic, prognostic, predictive, and treatment implications
    • Ciocca DR, Calderwood SK: Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications. Cell Stress Chaperones 2005, 10(2):86-103.
    • (2005) Cell Stress Chaperones , vol.10 , Issue.2 , pp. 86-103
    • Ciocca, D.R.1    Calderwood, S.K.2
  • 36
    • 0036039735 scopus 로고    scopus 로고
    • Enhancement of oxidative stress-induced apoptosis by Hsp 105alpha in mouse embryonal F9 cells
    • Yamagishi N, Saito Y, Ishihara K, Hatayama T: Enhancement of oxidative stress-induced apoptosis by Hsp 105alpha in mouse embryonal F9 cells. Eur J Biochem 2002, 269(16):4143-4151.
    • (2002) Eur J Biochem , vol.269 , Issue.16 , pp. 4143-4151
    • Yamagishi, N.1    Saito, Y.2    Ishihara, K.3    Hatayama, T.4
  • 38
    • 0037183737 scopus 로고    scopus 로고
    • Paeoniae Radix, a Chinese herbal extract, inhibit hepatoma cells growth by inducing apoptosis in a p53 independent pathway
    • Lee SM, Li ML, Tse YC, Leung SC, Lee MM, Tsui SK, Fung KP, Lee CY, Waye MM: Paeoniae Radix, a Chinese herbal extract, inhibit hepatoma cells growth by inducing apoptosis in a p53 independent pathway. Life Sci 2002, 71(19):2267-2277.
    • (2002) Life Sci , vol.71 , Issue.19 , pp. 2267-2277
    • Lee, S.M.1    Li, M.L.2    Tse, Y.C.3    Leung, S.C.4    Lee, M.M.5    Tsui, S.K.6    Fung, K.P.7    Lee, C.Y.8    Waye, M.M.9
  • 39
    • 0036781431 scopus 로고    scopus 로고
    • Expression of WNT7A in human normal tissues and cancer, and regulation of WNT7A and WNT7B in human cancer
    • Kirikoshi H, Katoh M: Expression of WNT7A in human normal tissues and cancer, and regulation of WNT7A and WNT7B in human cancer. Int J Oncol 2002, 21(4):895-900.
    • (2002) Int J Oncol , vol.21 , Issue.4 , pp. 895-900
    • Kirikoshi, H.1    Katoh, M.2
  • 40
    • 1242274547 scopus 로고    scopus 로고
    • Long-term prognostic significance of neoangiogenesis in breast carcinomas: Comparison of Tie-2/Tek, CD 105, and CD31 immunocytochemical expression
    • Dales JP, Garcia S, Carpentier S, Andrac L, Ramuz O, Lavaut MN, Allasia C, Bonnier P, Charpin C: Long-term prognostic significance of neoangiogenesis in breast carcinomas: comparison of Tie-2/Tek, CD 105, and CD31 immunocytochemical expression. Hum Pathol 2004, 35(2):176-183.
    • (2004) Hum Pathol , vol.35 , Issue.2 , pp. 176-183
    • Dales, J.P.1    Garcia, S.2    Carpentier, S.3    Andrac, L.4    Ramuz, O.5    Lavaut, M.N.6    Allasia, C.7    Bonnier, P.8    Charpin, C.9
  • 41
    • 1342288007 scopus 로고    scopus 로고
    • SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence
    • Bhasin M, Raghava GP: SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence. Bioinformatics 2004, 20(3):421-423.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 421-423
    • Bhasin, M.1    Raghava, G.P.2
  • 43
    • 0034776133 scopus 로고    scopus 로고
    • Fuzzy neural network-based prediction of the motif for MHC class II binding peptides
    • Noguchi H, Hanai T, Honda H, Harrison LC, Kobayashi T: Fuzzy neural network-based prediction of the motif for MHC class II binding peptides. J Biosci Bioeng 2001, 92(3):227-231.
    • (2001) J Biosci Bioeng , vol.92 , Issue.3 , pp. 227-231
    • Noguchi, H.1    Hanai, T.2    Honda, H.3    Harrison, L.C.4    Kobayashi, T.5
  • 44
    • 0026923902 scopus 로고
    • On fuzzy modeling using fuzzy neural networks with the back-propagation algorithm
    • Horikawa S, Furuhashi T, Uchikawa Y: On fuzzy modeling using fuzzy neural networks with the back-propagation algorithm. IEEE T Neurol Networ 1992, 3(5):801-806.
    • (1992) IEEE T Neurol Networ , vol.3 , Issue.5 , pp. 801-806
    • Horikawa, S.1    Furuhashi, T.2    Uchikawa, Y.3
  • 46
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale SVM learning practical
    • In Edited by: Scholkopf B, Burges C, Smola A. Cambridge, MIT Press
    • Joachims T: Making large-scale SVM learning practical. In Advances in Kernel Methods - Support Vector Learning Edited by: Scholkopf B, Burges C, Smola A. Cambridge, MIT Press; 1999.
    • (1999) Advances in Kernel Methods - Support Vector Learning
    • Joachims, T.1
  • 47
    • 0031211090 scopus 로고    scopus 로고
    • A decision-theoretic generalization of online learning and an application to boosting
    • Freund Y, Schapire RE: A decision-theoretic generalization of online learning and an application to boosting. J Comput System Sci 1997, 55:119-139.
    • (1997) J Comput System Sci , vol.55 , pp. 119-139
    • Freund, Y.1    Schapire, R.E.2


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