The PUB domain functions as a p97 binding module in human peptide N-glycanase

Journal of Biological Chemistry

Volumn 281, Issue 35, 2006, Pages 25502-25508

  Allen, Mark D ^a   Buchberger, Alexander ^b   Bycroft, Mark ^a  

^a MEDICAL RESEARCH COUNCIL   (United Kingdom)

^b MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINETRIPHOSPHATE; BIOLOGICAL MEMBRANES; DEGRADATION; PROTEINS;

GLYCOPROTEINS; HUMAN PEPTIDES; MOLECULAR MACHINE;

ENZYMES;

BINDING PROTEIN; GLUCAN SYNTHASE; PROTEIN P97; PUB PROTEIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ANALYTIC METHOD; ARTICLE; BINDING SITE; CONTROLLED STUDY; CRYSTAL STRUCTURE; GENETIC CONSERVATION; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; STRUCTURE ANALYSIS;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; HUMANS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL) ASPARAGINE AMIDASE; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; UBIQUITIN;

EID: 33748752425     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M601173200     Document Type: Article

References (37)

1. Romisch, K. (2005) Annu. Rev. Cell Dev. Biol. 21, 435-456
2. Meusser, B., Hirsch, C., Jarosch, E., and Sommer, T. (2005) Nat. Cell Biol. 7, 766-772
3. Bays, N. W., and Hampton, R. Y. (2002) Curr. Biol. 12, R366-R371
4. DeLaBarre, B., and Brunger, A. T. (2003) Nat. Struct. Biol. 10, 856-863
5. DeLaBarre, B., and Brunger, A. T. (2005) J. Mol. Biol. 347, 437-452
6. Beuron, F., Dreveny, I., Yuan, X., Pye, V. E., McKeown, C., Briggs, L. C., Cliff, M. J., Kaneko, Y., Wallis, R., Isaacson, R. L., Ladbury, J. E., Matthews, S. J., Kondo, H., Zhang, X., and Freemont, P. S. (2006) EMBO J.
7. Watts, G. D., Wymer, J., Kovach, M. J., Mehta, S. G., Mumm, S., Darvish, D., Pestronk, A., Whyte, M. P., and Kimonis, V. E. (2004) Nat. Genet. 36, 377-381
8. Weihl, C. C., Dalal, S., Pestronk, A., and Hanson, P. I. (2006) Hum. Mol. Genet. 15, 189-199
9. Katiyar, S., Li, G., and Lennarz, W. J. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 13774-13779
10. Blom, D., Hirsch, C., Stern, P., Tortorella, D., and Ploegh, H. L. (2004) EMBO J. 23, 650-658
11. Kim, I., Ahn, J., Liu, C., Tanabe, K., Apodaca, J., Suzuki, T., and Rao, H. (2006) J. Cell Biol. 172, 211-219
12. Lee, J. H., Choi, J. M., Lee, C., Yi, K. J., and Cho, Y. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 9144-9149
13. Park, H., Suzuki, T., and Lennarz, W. J. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 11163-11168
14. Zhao, G., Zhou, X., Wang, L., Li, G., Kisker, C., Lennarz, W. J., and Schindelin, H. (2006) J. Biol. Chem. 281, 13751-13761
15. Suzuki, T., Park, H., Till, E. A., and Lennarz, W. J. (2001) Biochem. Biophys. Res. Comm. 287, 1083-1087
16. Doerks, T., Copley, R. R., Schultz, J., Ponting, C. P., and Bork, P. (2002) Genome Res. 12, 47-56
17. Li, G., Zhou, X., Zhao, G., Schindelin, H., and Lennarz, W. J. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 15809-15814
18. Katiyar, S., Joshi, S., and Lennarz, W. J. (2005) Mol. Biol. Cell 16, 4584-4594
19. McNeill, H., Knebel, A., Arthur, J. S., Cuenda, A., and Cohen, P. (2004) Biochem. J. 384, 391-400
20. Leslie, A. G. W. (1991) CCP4 and ESF-EACMB Newsletter on Protein Crystallography, SERC Laboratory, Daresbury, Warrington
21. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
22. Terwilliger, T. C. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 965-972
23. Turk, D. (1992) Further Development of a Program for Molecular Graphics and Electron Density Manipulation and Its Application to Protein Structure Determination. Ph.D. thesis, Technische Universität, München
24. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
25. Olsen, B. B., Jessen, V., Hojrup, P., Issinger, O. G., and Boldyreff, B. (2003) FEBS Lett. 546, 218-222
26. Schuberth, C., Richly, H., Rumpf, S., and Buchberger, A. (2004) EMBO Rep. 5, 818-824
27. Holm, L., and Sander, C. (1995) Trends Biochem. Sci. 20, 478-480
28. Carim-Todd, L., Escarceller, M., Estivill, X., and Sumoy, L. (2001) Biochim. Biophys. Acta 1517, 298-301
29. Buchberger, A., Howard, M. J., Proctor, M., and Bycroft, M. (2001) J. Mol. Biol. 307, 17-24
30. Yuan, X., Shaw, A., Zhang, X., Kondo, H., Lally, J., Freemont, P. S., and Matthews, S. (2001) J. Mol. Biol. 311, 255-263
31. Dreveny, I., Pye, V. E., Beuron, F., Briggs, L. C., Isaacson, R. L., Matthews, S. J., McKeown, C., Yuan, X., Zhang, X., and Freemont, P. S. (2004) Biochem. Soc. Trans. 32, 715-720
32. Dreveny, I., Kondo, H., Uchiyama, K., Shaw, A., Zhang, X., and Freemont, P. S. (2004) EMBO J. 23, 1030-1039
33. Woodman, P. G. (2003) J. Cell Sci. 116, 4283-4290
34. Meyer, H. H., Shorter, J. G., Seemann, J., Pappin, D., and Warren, G. (2000) EMBO J. 19, 2181-2192
35. Rumpf, S., and Jentsch, S. (2006) Mol. Cell 21, 261-269
36. Iyer, L. M., Koonin, E. V., and Aravind, L. (2004) Cell Cycle 3, 1440-1450
37. Clamp, M., Cuff, J., Searle, S. M., and Barton, G. J. (2004) Bioinformatics 20, 426-427