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Volumn 22, Issue 17, 2006, Pages 2122-2128

A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

EID: 33748676079     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl365     Document Type: Article
Times cited : (58)

References (27)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey,J.M. et al. (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res., 12, 1805-1814.
    • (2002) Genome Res. , vol.12 , pp. 1805-1814
    • Akey, J.M.1
  • 2
    • 8844227502 scopus 로고    scopus 로고
    • Population history and Natural selection shape patterns of genetic variation in 132 genes
    • Akey,J.M. et al. (2004) Population history and Natural selection shape patterns of genetic variation in 132 genes. PloS. Biol., 2, 1591-1599.
    • (2004) PloS. Biol. , vol.2 , pp. 1591-1599
    • Akey, J.M.1
  • 3
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • Altshuler,D. et al. (2005) International HapMap Consortium. A haplotype map of the human genome. Nature, 437, 1229-1320.
    • (2005) Nature , vol.437 , pp. 1229-1320
    • Altshuler, D.1
  • 4
    • 0037307413 scopus 로고    scopus 로고
    • Signatures of natural selection in the human genome
    • Bamshad,M. and Wooding,S.P. (2003) Signatures of natural selection in the human genome. Nat. Rev. Genet., 4, 99-111.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 99-111
    • Bamshad, M.1    Wooding, S.P.2
  • 5
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett,J.C. et al. (2005) Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1
  • 6
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc. Ser. B, 57, 289-300.
    • (1995) J. R. Statist. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 7
    • 2442677652 scopus 로고    scopus 로고
    • Genetic signatures of strong recent positive selection at the lactase gene
    • Bersaglieri,T. et al. (2004) Genetic signatures of strong recent positive selection at the lactase gene. Am. J. Hum. Genet., 74, 1111-1120.
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 1111-1120
    • Bersaglieri, T.1
  • 8
    • 0026087208 scopus 로고
    • Drift, admixture, and selection in human evolution: A study with DNA polymorphisms
    • Bowcock,A.M. et al. (1991) Drift, admixture, and selection in human evolution: A study with DNA polymorphisms. Proc. Natl Acad. Sci. USA, 88, 839-843.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 839-843
    • Bowcock, A.M.1
  • 9
    • 0037108783 scopus 로고    scopus 로고
    • Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels
    • Britten,R.J. (2002) Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels. Proc. Natl Acad. Sci. USA, 99, 13633-13635.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 13633-13635
    • Britten, R.J.1
  • 10
    • 0346243805 scopus 로고    scopus 로고
    • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
    • Clark,A.G. et al. (2003) Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science, 302, 1960-1963.
    • (2003) Science , vol.302 , pp. 1960-1963
    • Clark, A.G.1
  • 11
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • Gabriel,S.B. et al. (2002) The structure of haplotype blocks in the human genome. Science, 296, 2225-2229.
    • (2002) Science , vol.296 , pp. 2225-2229
    • Gabriel, S.B.1
  • 12
    • 0032088632 scopus 로고    scopus 로고
    • Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence
    • Goodman,M. et al. (1998) Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. Mol. Phylogenet. Evol., 9, 585-598.
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 585-598
    • Goodman, M.1
  • 13
    • 0033039498 scopus 로고    scopus 로고
    • Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays
    • Hacia,J.G. et al. (1999) Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nat. Genet., 22, 164-167.
    • (1999) Nat. Genet. , vol.22 , pp. 164-167
    • Hacia, J.G.1
  • 14
    • 0036157464 scopus 로고    scopus 로고
    • Complex signatures of natural selection at the Duffy blood group locus
    • Hamblin,M.T. et al. (2002) Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet., 70, 369-383.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 369-383
    • Hamblin, M.T.1
  • 15
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin,R.C. and Krakauer,J. (1973) Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175-195.
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 16
    • 10744221619 scopus 로고    scopus 로고
    • Large-scale genotyping of complex DNA
    • Kennedy,G.C. et al. (2003) Large-scale genotyping of complex DNA. Nat. Biotechnol., 21, 1233-1237.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 1233-1237
    • Kennedy, G.C.1
  • 17
    • 20844455582 scopus 로고    scopus 로고
    • Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays
    • Matsuzaki,H. et al. (2004) Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays. Nat. Methods, 1, 109-111.
    • (2004) Nat. Methods , vol.1 , pp. 109-111
    • Matsuzaki, H.1
  • 18
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti,P.C. et al. (2002) Detecting recent positive selection in the human genome from haplotype structure. Nature, 419, 832-837.
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1
  • 19
    • 0032929373 scopus 로고    scopus 로고
    • Evolution of HLA class II molecules: Allelic and amino acid site variability across populations
    • Salamon,H. et al. (1999) Evolution of HLA class II molecules: Allelic and amino acid site variability across populations. Genetics, 152, 393-400.
    • (1999) Genetics , vol.152 , pp. 393-400
    • Salamon, H.1
  • 20
    • 0346728470 scopus 로고    scopus 로고
    • The X chromosome in population genetics
    • Schaffner,S.F. (2004) The X chromosome in population genetics. Nat. Rev. Genet., 5, 43-51.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 43-51
    • Schaffner, S.F.1
  • 21
    • 4143088044 scopus 로고    scopus 로고
    • Genome scans of DNA variability in humans reveal evidence for selective sweeps outside of Africa
    • Storz,J.F. et al. (2004) Genome scans of DNA variability in humans reveal evidence for selective sweeps outside of Africa. Mol. Biol. Evol., 21, 1800-1811.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1800-1811
    • Storz, J.F.1
  • 22
    • 0242524432 scopus 로고    scopus 로고
    • Patterns of human genetic diversity: Implications for human evolutionary history and disease
    • Tishkoff,S.A. and Verrelli,B.C. (2003) Patterns of human genetic diversity: Implications for human evolutionary history and disease. Annu. Rev. Genomics Hum. Genet., 4, 293-340.
    • (2003) Annu. Rev. Genomics Hum. Genet. , vol.4 , pp. 293-340
    • Tishkoff, S.A.1    Verrelli, B.C.2
  • 23
    • 5444236355 scopus 로고    scopus 로고
    • Positive selection on the human genome
    • Vallender,E.J. and Lahn,B.T. (2004) Positive selection on the human genome. Hum. Mol. Genet., 13, R245-R254.
    • (2004) Hum. Mol. Genet. , vol.13
    • Vallender, E.J.1    Lahn, B.T.2
  • 24
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
    • Wang,N. et al. (2002) Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation. Am. J. Hum. Genet., 71, 1227-1234.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1227-1234
    • Wang, N.1
  • 25
    • 0017481191 scopus 로고
    • Is the most frequent allele the oldest?
    • Watterson,G.A. and Guess,H.A. (1977) Is the most frequent allele the oldest? Theor. Popul. Biol., 11, 141-160.
    • (1977) Theor. Popul. Biol. , vol.11 , pp. 141-160
    • Watterson, G.A.1    Guess, H.A.2
  • 26
    • 27544501017 scopus 로고    scopus 로고
    • Measures of human population structure show heterogeneity among genomic regions
    • Weir,B.S. et al. (2005) Measures of human population structure show heterogeneity among genomic regions. Genome Res., 15, 1468-1476.
    • (2005) Genome Res. , vol.15 , pp. 1468-1476
    • Weir, B.S.1
  • 27
    • 0036724899 scopus 로고    scopus 로고
    • DNA sequence variation in a 3.7-kb noncoding sequence 5-prime of the CYP1A2 gene: Implications for human population history and natural selection
    • Wooding,S.P. et al. (2002) DNA sequence variation in a 3.7-kb noncoding sequence 5-prime of the CYP1A2 gene: Implications for human population history and natural selection. Am. J. Hum. Genet., 71, 528-542.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 528-542
    • Wooding, S.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.