Intraspecific sequence variation of chloroplast DNA among the component species of deciduous broad-leaved forests in Japan

Journal of Plant Research

Volumn 119, Issue 5, 2006, Pages 539-552

  Iwasaki, Takaya ^a   Aoki, Kyoko ^b   Seo, Akihiro ^c   Murakami, Noriaki ^a  

^a TOKYO METROPOLITAN UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c RESEARCH INSTITUTE FOR HUMANITY AND NATURE   (Japan)

Author keywords

Chloroplast DNA; Deciduous broad leaved forests; Intraspecific variation; Japanese beech forests; Phylogeography

Indexed keywords

CHLOROPLAST DNA;

ARTICLE; CLASSIFICATION; GENETIC POLYMORPHISM; GENETICS; HISTOLOGY; JAPAN; NUCLEOTIDE SEQUENCE; PLANT LEAF; SPECIES DIFFERENCE; TREE;

BASE SEQUENCE; DNA, CHLOROPLAST; JAPAN; PLANT LEAVES; POLYMORPHISM, GENETIC; SPECIES SPECIFICITY; TREES;

ACER; ACER JAPONICUM; ACER MICRANTHUM; CARPINUS JAPONICA; EUONYMUS; FAGUS; FAGUS CRENATA; LINDERA; LINDERA OBTUSILOBA; LINDERA TRILOBA; MAGNOLIA OBOVATA; MAGNOLIACEAE; PHOTINIA VILLOSA; STYRACACEAE; STYRAX OBASSIA;

EID: 33748652463     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-006-0010-y     Document Type: Article

References (29)

1. Aoki K, Suzuki T, Murakami N (2003) Intraspecific sequence variation of chloroplast DNA among the component species of evergreen broad-leaved forests in Japan. J Plant Res 116:337-344
2. Aoki K, Hattori T, Murakami N (2004a) Intraspecific sequence variation of chloroplast DNA among the component species of evergreen broad-leaved forests in Japan II. Acta Phytotax Geobot 55(2):125-128
3. Aoki K, Suzuki T, Hsu T-W, Murakami N (2004b) Phylogeography of the component species of broad-leaved evergreen forests in Japan, based on chloroplast DNA variation. J Plant Res 117:77-94
4. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochem Bull 19:11-15
5. Dumolin-Lapègue S, Kremer A, Petit RJ (1999) Are chloroplast and mitochondrial DNA variation species independent in oaks? Evolution 53:1406-1413
6. Fujii N, Senni K (2006) Phylogeography of Japanese alpine plants: biogeographic importance of alpine region of Central Honshu in Japan. Taxon 55(1):43-52
7. Fujii N, Ueda K, Shimizu T (1996) Intraspecific sequence variation of chloroplast DNA in Japanese alpine plants. J Phytogeogr Taxon 44:72-81
8. Fujii N, Ueda K, Watano Y, Shimizu T (1997) Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissonis Steven (Scrophulariaceae) and geographic structuring of the Japanese "alpine" plants. J Plant Res 110:195-207
9. Fujii N, Ueda K, Watano Y, Shimizu T (1999) Further analysis of intraspecific sequence variation of chloroplast DNA in Primula cuneifolia Ledeb. (Promulaceae): implications for biogeography of the Japanese alpine flara. J Plant Res 112:87-95
10. Fujii N, Tomaru N, Okuyama K, Koike T, Mikami T, Ueda K (2002) Chloroplast DNA phylogeography of Fagus crenata (Fagaceae) in Japan. Plant Syst Evol 232:21-33
11. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol Ecol 8:521-523
12. Hukisima T, Takasuna H, Matsui T, Nishio T, Kyan Y, Tsunetomi Y (1995) New phytosociological classification of beech forests in Japan (in Japanese with English abstract). Jpn J Ecol 45:79-98
13. Kanno M, Yokoyama J, Suyama Y, Ohyama M, Itoh T, Suzuki M (2004) Geographical distribution of two haplotypes of chloroplast DNA in four oak species (Quercus) in Japan. J Plant Res 117:311-317
14. Miwa H, Suhara J, Kitagawa N, Murakami N (2003) Biosystematic study of Japanese Conocephalum japonica (Hepaticae) based on rbcL sequence and allozyme data. Acta Phytotax Geobot 54(1):37-48
15. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
16. Nishizawa T, Watano Y (2000) Primer pairs suitable for PCR-SSCP analysis of chloroplast DNA in angiosperms. J Phytogeogr Taxon 48:63-66
17. Ohi T, Wakabayashi M, Wu S, Murata J (2003a) Phylogeography of Stachyurus praecox (Stachyuraceae) in the Japanese archipelago based on chloroplast DNA haplotypes. J Jpn Bot 78:1-14
18. Ohi T, Kajita T, Murata J (2003b) Distinct geographic structure as evidenced by chloroplast DNA haplotypes and ploidy level in Japanese Aucuba (Aucubaceae). Am J Bot 90(11):1645-1652
19. Okaura T, Harada K (2002) Phylogeographical structure revealed by chloroplast DNA variation in Japanese beech (Fagus crenata Blume). Heredity 88:322-329
20. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2005) DnaSP version 4.10.4: an integrated program for molecular population genetics and molecular evolution analysis. University of Barcelona, http://www.ub.es/dnasp/ Cited 17 November 2005
21. Senni K, Fujii N, Takahashi H, Sugawara T, Wakabayashi M (2005) Intraspecific chloplast DNA variations of the alpin plants in Japan. Acta Phytotax Geobot 56(3):265-275
22. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92(1):142-166
23. Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF (1998) The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot 85(9):1301-1315
24. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105-1109
25. Terachi T (1993) Structural alterations of chloroplast genome and their significance to the higher plant evolution. Bull Inst N all Land Util Dev Kyoto Sangyo Univ 14:138-148
26. Tsumura Y, Taguchi H, Suyama Y, Ohba K (1994) Geographical cline of chloroplast DNA variation in Abies mariesii. Theor Appl Genet 89:922-926
27. Watabnabe K, Kajita T, Murata J (2006), Chloroplast DNA variation and geographical structure of the Aristolochia kaempferi group (Aristolochiaceae). Am J Bot 93(3):442-453
28. Whittemore AT, Schall BA (1991) Interspecific gene flow in sympatric oaks. Proc Natl Acad Sci USA 88:2540-2544
29. Yatabe Y, Takamiya M, Murakami N (1998) Variation in the rbcL sequence of Stegnogramma pozoi subsp. mollissima (Thelypteridaceae) in Japan. J Plant Res 111:557-564