Phylogeography of Stachyurus praecox (Stachyuraceae) in the Japanese archipelago based on chloroplast DNA haplotypes

Journal of Japanese Botany

Volumn 78, Issue 1, 2003, Pages 1-14

  Ohi, Tetsuo ^a   Wakabayashi, Michio ^b   Wu, Sugong ^c   Murata, Jin ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b TOKYO METROPOLITAN UNIVERSITY   (Japan)

^c KUNMING INSTITUTE OF BOTANY   (China)

Author keywords

Chloroplast DNA; Intraspecific variation; Phylogeography; Stachyurus praecox; The Japanese archipelago

Indexed keywords

EMBRYOPHYTA; STACHYURACEAE; STACHYURUS PRAECOX;

EID: 0037325965     PISSN: 00222062     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (43)

1. Avise J. C. 2000. Phylogeography, The history and formation of species. Harvard Univ. Press, Cambridge.
2. _, Arnold J., Ball R. M., Bermingham E., Lamb T., Neigel J. E., Reeb C. A. and Saunders N. C. 1987. Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18: 489-522.
3. Cruzan M. B. and Templeton A. R. 2000. Paleoecology and coalescence: phylogeographic analysis of hypotheses from the fossil record. TREE 15: 491-495.
4. Demesure B., Comps B. and Petit R. J. 1996. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution 50: 2515-2521.
5. Dumolin-Lapègue S., Demesure B., Fineschi S., Le Corre V. and Petit R. J. 1997. Phylogeographical structure of white oaks throughout the European continent. Genetics 146: 1457-1487.
6. Excoffier L., Smouse P. E. and Quattro J. M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
7. Ferris C., Oliver R. P., Davy A. J. and Hewitt G. M. 1993. Native oak chloroplast reveal an ancient divide across Europe. Mol. Ecol. 2: 337-344.
8. _, _, _ and _. 1995. Using chloroplast DNA to trace postglacial migration routes of oaks into Britain. Mol. Ecol. 4: 731-738.
9. Fujii N., Ueda K., Watano Y. and Shimizu T. 1997. Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissionis Steven (Scrophulariaceae) and geographic structuring of the Japanese "alpine" plants. J. Plant Res. 110: 195-207.
10. _, _, _ and _. 1999. Further analysis of intraspecific sequence variation of chloroplast DNA in Primula cuneifolia Ledeb. (Primulaceae): implications for biogeography of the Japanese alpine flora. J. Plant Res. 112: 87-95.
11. _, Tonmaru N., Okuyama K., Koike T., Mikami T., and UEDA K. 2002. Chloroplast DNA phylogeography of Fagus crenata (Fagaceae) in Japan. Plant Syst. Evol. 232: 21-33.
12. Golenberg E. M., Clegg M. T. Durbin M. L., Doebley J. and Ma D. P. 1993. Evolution of a non-coding region of the chloroplast genome. Mol. Phylogenet. Evol 2: 52-64.
13. Hasebe M. and Iwatsuki K. 1990. Adiantum capillusveneris chloroplast DNA clone bank: as useful heterologous probes in the systematics of the leptosporangiate ferns. Amer. Fern J. 80: 20-25.
14. Hewitt G. M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Linn. Soc. 58: 247-276.
15. _. 2000. The genetic legacy of the Quaternary ice ages, Nature 405: 907-913.
16. Horikawa Y. 1972. Atlas of the Japanese Flora, an introduction to plant sociology of East Asia, pp. 225-226. Gakken Co., Ltd., Tokyo.
17. Huntley B. and Webb III T. 1988. Vegetation history. pp. 459-518. Kluwer Academic Publishers, Dordrecht.
18. Kamei T. and Research Group for the Biogeography from Würm Glacial. 1981. Fauna and flora of the Japanese Islands in the last glacial time. The Quat. Res. 20: 191-205.
19. Kanai H. 1963. Phytogeographical observations on the Japono-Himalayan Elements. J. Fac. Sci., Univ. Tokyo, Sec. III 8: 305-339.
20. Kelchner S. A. 2000. The evolution of non-coding chloroplast DNA and its application in plant systematics. Ann. Mo. Bot. Gard. 87: 482-498.
21. King A. R. and Ferris C. 1998. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Mol. Ecol. 7: 1151-1161.
22. Kizaki K. 1980. The natural history of Ryukyu. Tsukiji Shokan, Tokyo (in Japanese).
23. Li H. L. 1993. Stachyuraceae. In: Flora of Taiwan, 2nd ed., vol. 2, pp. 835-836.
24. Masamune G. 1938. Miscellaneous Notes on the Flora of the Eastern Asia V. Trans. Nat. Hist. Soc. Form. 28: 284-288.
25. Ohba H. 1999. Stachyuraceae. In: K. Iwatsuki et al., (eds.), Flora of Japan IIc, pp. 191-192. Kodansha, Tokyo.
26. Ohi T. and Murata J. 2000. Geographical variations in chloroplast DNA of Stachyurus macrocarpus Koidz. and Stachyurus praecox Sieb. et Zucc. (Stachyuraceae). Ogasawara Res. 25: 1-24.
27. Ono Y. 1984. Late glacial paleoclimate reconstructed from glacial and periglacial landforms in Japan. Geogr. Rev. Jpn., Ser. B 57: 80-100.
28. Petit R. J., Kremer A. and Wagner D. B. 1993. Geographical structure of chloroplast DNA polymorphisms in European oaks. Theor. Appl. Genet. 87: 122-128.
29. _, Pineau E., Demesure B., Bacilieri R. and Ducousso A. 1997. Chloroplast DNA footprints of postglacial recolonization by oaks. Proc. Nat. Acad. Sci. USA 94: 9996-10001.
30. Posada D. and Crandall K. A. 2001. Intraspecific gene genealogies: trees grafting into networks. TREE 16: 37-45.
31. Schaal B. A. and Olsen K. M. 2000. Gene genealogies and population variation in plants. Proc. Nat. Acad. Sci. USA 97: 7024-7029.
32. Setoguchi H. and Ohba H. 1995. Phylogenetic relationships in Crossostylis (Rhizophoraceae) inferred from restriction site variation of chloroplast DNA. J. Plant Res. 108: 87-92.
33. Sewell M. M., Parks C. R. and Chase M. W. 1996. Intraspecific chloroplast DNA variation and biogeography of north American Liriodendron L. (Magnoliaceae). Evolution 50: 1147-1154.
34. Sinclair W. T., Morman J. D. and Ennos R. A. 1999. The postglacial history of Scots pine (Pinus sylvestris L.) in western Europe: evidence from mitochondrial DNA variation. Mol. Ecol. 8: 83-88.
35. Soltis D. E., Gitzendanner M. A., Strenge D. D. and Soltis P. S. 1997. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Syst. Evol. 206: 353-373.
36. Swofford D. L. 2001. PAUP*. Phylogenetic Analysis Using Parsimony. Version 4. Sinauer Associates, Sunderland, Massachusetts.
37. Taberlet P., Gielly L., Pautou G. and Bouvet J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109.
38. _, Fumagalli L., Wust-Saucy A. G. and Cosson J. F. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 7: 453-464.
39. Tang Y. C., Cao Y. L., Xi Y. Z. and He J. 1983. Systematic studies on Chinese Stachyuraceae (1): Phytogeographical, cytological, palynological. Acta Phytotax. Sinica 21: 236-252.
40. Tomaru N., Takahashi M., Tsumura Y., Takahashi M. and Ohba K. 1998. Intraspecific variation and phylogeographical patterns of Fagus crenata (Fagaceae) mitochondrial DNA. Amer. J. Bot 85: 629-639.
41. Tsukada M. 1988. Japan. In: Huntley B. and Wwbb III T. (eds.) Vegetation history. pp. 459-518. Kluwer Academic Publishers, Dordrecht.
42. Tsumura Y. and Suyama Y. 1998. Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species. Evolution 52: 1031-1042.
43. Yasuda Y. and Narita K. 1981. Calculated thermal index maps for the reconstruction of past vegetation since the last glacial age in Japan. Geogr. Rev. Jpn., Ser. A 54: 369-381.