Geographical distribution of two haplotypes of chloroplast DNA in four oak species (Quercus) in Japan

Journal of Plant Research

Volumn 117, Issue 4, 2004, Pages 311-317

  Kanno, Munetake ^a   Yokoyama, Jun ^a   Suyama, Yoshihisa ^a   Ohyama, Motonari ^a   Itoh, Takao ^b   Suzuki, Mitsuo ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

Chloroplast DNA polymorphism; Haplotype; Hybridization; Quercus

Indexed keywords

CHLOROPLAST DNA;

ARTICLE; COMPARATIVE STUDY; GENETICS; HAPLOTYPE; JAPAN; NUCLEOTIDE SEQUENCE; OAK; PHYLOGENY; SPECIES DIFFERENCE;

BASE SEQUENCE; DNA, CHLOROPLAST; HAPLOTYPES; JAPAN; PHYLOGENY; QUERCUS; SPECIES SPECIFICITY;

CONIFEROPHYTA; EMBRYOPHYTA; QUERCUS; QUERCUS ALIENA; QUERCUS DENTATA; QUERCUS MONGOLICA; QUERCUS MONGOLICA VAR. CRISPULA; QUERCUS SERRATA;

EID: 5444273042     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-004-0160-8     Document Type: Article

References (35)

1. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
2. Bruschi P, Vendramin GG, Bussotti F, Grossoni P (2000) Morphological and molecular differentiation between Quercus petraea (Matt.) Liebl. and Quercus pubescens Willd (Fagaceae) in northern and central Italy. Ann Bot 85:325-333
3. Dumolin S, Demesure B, Petit RJ (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91:1253-1256
4. Dumolin-Lapegue S, Demesure B, Fineschi S, Corre VL, Petit RJ (1997) Phylogeographic structure of white oaks throughout the European continent. Genetics 146:1475-1487
5. Dumolin-Lapegue S, Pemonge MH, Gielly L,Taberlet P, Petit R (1999) Amplification of oak DNA from ancient and modern wood. Mol Ecol 8:2137-2140
6. Ferris C, Oliver RP, Davy AJ, Hewitt GM (1993) Native oak chloroplasts reveal an ancient divide across Europe. Mol Ecol 2:337-344
7. Fujii N, Ueda K, Watano Y, Shimizu T (1999) Further analysis of intraspecific sequence variation of chloroplast DNA in Primula cunefolia Ledeb. (Primulaceae): implications for biogeography of the Japanese alpine flora. J Plant Res 112:87-95
8. Fujii N, Tomaru N, Okuyama K, Koike T, Mikami T, Ueda K (2002) Chloroplast DNA phylogeography of Fagus crenata (Fagaceae) in Japan. Plant Syst Evol 232:21-33
9. Hagemann R, Schroder MB (1989) The cytological basis of the plastid inheritance in angiosperms. Protoplasma 152:57-64
10. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biol J Linn Soc 68:87-112
11. Horikawa Y (1972) Atlas of Japanese flora: an introduction to plant sociology of East Asia. Gakken, Tokyo
12. Horikawa Y (1976) Atlas of Japanese flora 2: an introduction to plant sociology of East Asia. Gakken, Tokyo
13. Ishida TA, Hattori K, Sato H, Kimura MA (2003) Differentiation and hybridization between Quereus crispula and Q. dentata (Fagaceae): insights from morphological traits, amplified fragment length polymorphism markers, and leafminer composition. Am J Bot 90:769-776
14. Kamei T, Research group for the biogeography from Würm Glacial (1981) Fauna and flora of the Japanese islands in the last glacial time (in Japanese with English abstract). Quat Res 20:191-205
15. Kanazashi A, Kanazashi T, Kawahara T (1997) Evidence of reproductive barriers between closely related species of Quercus. In: Steiner KC (ed) Diversity and adaptation in oak species. Proc 2nd Meeting of Working Party 2.08.05, Genetics Quercus IUFRO
16. Kitamura S, Horikawa T (1951) On Quercus subg. Lepidobalanus of Japan, Korea and North China. Mem Coll Sci Univ Kyoto Ser B 20:20-25
17. Kleinschmit JR, Bacilieri GR, Kremer A, Roloff A (1995) Comparison of morphological and genetic traits of pedunculate oak (Q. robur L.) and sessile oak (Q. petraea (Matt.) Liebl.). Silv Genet 44:256-269
18. Manos PS, Doyle JJ, Nixon KC (1999) Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Mol Phylogenet Evol 12:333-349
19. Ohashi H (1988) The new name instead of Quercus mongolica Fisch, var. groserrata. (Bl.) Rehd. & Willis. (Fagaceae) (in Japanese). J Jpn Bot 63:13-14
20. Ohi T, Wakabayashi M, Wu S, Murata J (2003) Phylogeography of Stachyurus praecox (Stachyuraceae) in the Japanese archipelago based on chloroplast DNA haplotypes. J Jpn Bot 78:1-14
21. Ohyama M, Baba K, Itoh T (2001) Wood identification of Japanese Cyclobalanopsis species (Fagaceae) based on DNA polymorphism of the intergenic spacer between trnT and trnL 5′ exon. J Wood Sci 45:498-501
22. Okaura T, Harada K (2002) Phylogeographical structure revealed by chloroplast DNA variation in Japanese beech (Fagus crenata Blume). Heredity 88:322-329
23. Petit RJ, Brewer S, Bordacs S, Burg K, Cheddadi R, Coart E, Cottrell J, Csaikl UM, van Dam B, Deans JD, Espinel S, Fineschi S, Finkeldey R, Glaz I, Goicoechea PG, Jensen JS, Konig AO, Lowe AJ, Madsen SF, Matyas G, Munro RC, Popescu F, Slade D, Tabbener H, Vries SGM, Ziegenhagen B, Beaulieu JL, Kremer A (2002) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. For Ecol Manage 156:49-74
24. Rehder A (1940) Manual of cultivated trees and shrubs hardy in North America, 2nd edn. MacMillan, New York
25. Schmitz-Linneweber C, Maier RM, Alcaraz JP, Cottet A, Herrmann RG, Mache R (2001) The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol Biol 45:307-315
26. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohta C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of tobacco chloroplast genome: its gene organization and expression. EMBO J 5:2043-2049
27. Soltis DE, Gitzendanner MA, Strege DD, Soltis PS (1997) Chloroplast DNA intraspecific phylogeography of plants from the pacific northwest of North America. Plant Syst Evol 206:353-373
28. Suyama Y, Yoshimura H, Tsumura Y (2000) Molecular phylogenetic position of Japanese Abies (Pinaceae) based on chloroplast DNA sequences. Mol Phylogenet Evol 16:271-277
29. Swofford DL (1993) PAUP: Phylogenetic analysis using parsimony, version 3.1. Illinois Natural History Survey, Champaign
30. Tomaru N, Takahashi M, Tsumura Y, Takahashi M, Ohba K (1998) Intraspecific variation and phylogeographic patterns of Fagus crenata (Fagaceae) Mitochondrial DNA. Am J Bot 85:629-636
31. Tomlinson PT, Jensen RJ, Hancock JF (2000) Do whole tree silvic characters indicate hybridization in red oak (Quercus section Lobatae)? Am Midl Nat 143:154-168
32. Tsukada M (1982) Cryptomeria japonica: glacial refugia and late-glacial and postglacial migration. Ecology 63:1091-1105
33. Tsumura Y, Taguchi H, Suyama Y, Ohba K (1994) Geographical cline of chloroplast DNA variation in Abies mariesii. Theor Appl Genet 89:922-926
34. Ubukata M, Itahana N, Kohono K (1999) Cross-compatibility between Quercus mongolica var. grosseserrata and Quercus dentata and both the reproductive ability and flowering time of their interspecific hybrids (in Japanese with English abstract). J Jpn For Soc 81:286-290
35. Yasuda Y, Miyoshi N (eds.) (1998) The illustrated vegetation history of the Japanese Archipelago (in Japanese). Asakura-Shoten, Tokyo