Further analysis of intraspecific sequence variation of chloroplast DNA in Primula cuneifolia Ledeb. (Primulaceae): Implications for biogeography of the Japanese alpine flora

Journal of Plant Research

Volumn 112, Issue 1, 1999, Pages 87-95

  Fujii, Noriyuki ^a   Ueda, Kunihiko ^b   Watano, Yasuyuki ^b   Shimizu, Tatemi ^c  

^a TOKYO METROPOLITAN UNIVERSITY   (Japan)

^b KANAZAWA UNIVERSITY   (Japan)

^c Shimizu Botanical Laboratory   (Japan)

Author keywords

Alpine flora; Chloroplast DNA; Intraspecific variation; Phylogeography; Phytogeography; Primula cuneifolia

Indexed keywords

PRIMULA CUNEIFOLIA; PRIMULACEAE;

EID: 0033247077     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/pl00013866     Document Type: Article

References (25)

1. Adachi, J. and Hasegawa, M. 1996. MOLPHY: Programs for Molecular Phylogenetics version 2.3b3. Institute of Statistical Mathematics, Tokyo.
2. Avise, J.C., Arnold, J., Ball, R.M., Bermingham, E., Lamb, T., Neigel, J.E., Reeb, C.A. and Saunders, N.C. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Ann. Rev. Ecol. Syst. 18: 489-522.
3. Demesure, B., Comps, B. and Petit, R.J. 1996. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution 50: 2515-2520.
4. Doyle, J.J. and Dickson, E.E. 1987. Preservation of plant samples for DNA restriction endonuclease analysis. Taxon 36: 715-722.
5. Fujii, N., Ueda, K., Watano, Y. and Shimizu, T. 1995. Intraspecific sequence variation in Chloroplast DNA of Primula cuneifolia Ledeb. J. Phytogeogr. Taxon. 43: 15-24.
6. Fujii, N., Ueda, K. and Shimizu, T. 1996. Intraspecific sequence variation of chloroplast DNA in Japanese alpine plants. J. Phytogeogr. Taxon. 44: 72-81.
7. Fujii, N., Ueda, K., Watano, Y. and Shimizu, T. 1997. Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissonis Steven (Scrophulariaceae) and geographic structuring of the Japanese "alpine" plants. J. Plant Res. 110: 195-207.
8. Harris, S.A. and Ingram, R. 1991. Chloroplast DNA and biosystematics: The effects of intraspecific diversity and plastid transmission. Taxon 40: 393-412.
9. Hasegawa, M., Kishino, H. and Yano, T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
10. Kawano, S. 1971. Studies on the alpine flora of Hokkaido, Japan I. Phytogeography. J. Coll. Lib. Arts, Toyama Univ. Nat. Sci. 4: 13-96.
11. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
12. Koidzumi, G. 1919. Genetic and floristic phytogeography of the alpine flora of Japan. Bot. Mag. (Tokyo) 33: 193-222.
13. Mayer, M.S. and Soltis, P.S. 1994. The evolution of Serpentine endemics: A chloroplast DNA phylogeny of the Streptanthus glandulosus complex (Cruciferae). Syst. Bot. 19: 557-574.
14. Minato, M. and Ijiri, S. 1976. The Japanese Archipelago. 3rd ed., Iwanamishoten, Tokyo. (in Japanese)
15. O'Donnell, K. 1992. Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris). Curr. Genet. 22: 213-220.
16. Sewell, M.M., Parks, C.R. and Chase, M.W. 1996. Intraspecific chloroplast DNA variation and biogeography of North American Liriodendron L. (Magnoliaceae). Evolution 50: 1147-1154.
17. Soltis, D.E., Soltis, P.S. and Milligan, B.G. 1992. Intraspecific chloroplast DNA variation: Systematics and phylogenetic implication. In P.S. Soltis, D.E. Soltis and J.J. Doyle, eds., Molecular Systematics of Plants, Chapman and Hall, New York, pp. 117-150.
18. Soltis, D.E., Gitzendanner, M.A., Strenge, D.D. and Soltis, P.S. 1997. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Pl. Syst. Evol. 206: 353-373.
19. Swofford, D.L. 1993. PAUP: Phylogenetic Analysis Using Parsimony version 3.1.1. The Illinois Natural History Survey, Champaign.
20. Taberlet, P., Gielly, L., Pautou, G. and Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Mol. Bio. 17: 1105-1109.
21. Terachi, T. 1993. Structural alterations of chloroplast genome and their significance to the higher plant evolution. Bull. Inst. Natl. Land Util. Developm. Kyoto Sangyo Univ. 14: 138-148.
22. Thompson, J.D., Higgins, D.G. and Gibson, T.J. 1996. Clustal W version 1.6. EMBL, Heidelberg.
23. Toyokuni, H. 1981. A preliminary note on the floristic phytogeography of the alpine flora of Japan. J. Fac. Lib. Arts. Shinshu Univ. Nat. Sci. 15: 81-96.
24. Van Dijk, P. and Bakx-Schotman, T. 1997. Chloroplast DNA phylogeography and cytotype geography in autopolyploid Plantago media. Mol. Ecol. 6: 345-352.
25. Yamazaki, T. 1993. Primula. In K. Iwatsuki, T. Yamazaki, D.E. Boufford and H. Ohba, eds., Flora of Japan 3a, Kodansha, pp. 87-94.