Neutron Laue macromolecular crystallography

European Biophysics Journal

Volumn 35, Issue 7, 2006, Pages 611-620

  Meilleur, Flora ^a   Myles, Dean A A ^b   Blakeley, Matthew P ^c  

^a INSTITUT LAUE LANGEVIN   (France)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; HYDROGEN;

CRYSTAL; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; FREEZING; HYDRATION; MACROMOLECULE; MOLECULAR BIOLOGY; MOLECULAR WEIGHT; NEUTRON; NEUTRON SCATTERING; OPTICS; PROTEIN STRUCTURE; REVIEW; TEMPERATURE;

CRYSTALLOGRAPHY; DEUTERIUM; FORECASTING; HYDROGEN BONDING; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; NEUTRON DIFFRACTION; NEUTRONS;

EID: 33748631833     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-006-0074-6     Document Type: Review

References (59)

1. Arai S, Chatake T, Ohhara T, Kurihara K, Tanaka I, Suzuki N, Fujimoto Z, Mizuno H, Niimura N (2005) Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements. Nucleic Acids Res 33(9):3017-3024
2. Artero JB, Hartlein M, McSweeney S, Timmins P (2006) A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O. Acta Crystallogr D Biol Crystallogr 61(Pt 11):1541-1549
3. Bau R (2004) Neutron diffraction studies on rubredoxin from Pyrococcus furiosus. J Synchrotron Radiat 11(Pt 1):76-79
4. Bennett BC, Myles DA, Howell EE, Dealwis CG (2005) Preliminary neutron diffraction studies of Escherichia coli dihydrofolate reductase bound to the anticancer drug methotrexate. Acta Crystallogr D Biol Crystallogr 61(Pt 5):574-579
5. Blakeley MP, Mitschler A, Hazemann I, Meilleur F, Myles DA, Podjarny A (2006) Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase-inhibitor complex. Eur Biophys J( this issue)
6. Blakeley MP, Kalb AJ, Helliwell JR, Myles DA (2004) The 15-K neutron structure of saccharide-free concanavalin A. Proc Natl Acad Sci USA 101(47):16405-16410
7. Bon C, Lehmann MS, Wilkinson C (1999) Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme. Acta Crystallogr D Biol Crystallogr 55(Pt 5):978-987
8. Budayova-Spano M, Bonneté F, Ferté N, El Hajji M, Meilleur F, Blakeley MP, Castro B (2006) Acta Crystallogr F Biol Crystallogr 62:306-309
9. Budayova-Spano M, Fisher SZ, Dauvergne MT, Agbandje-McKenna M, Silverman DN, Myles DA, McKenna R (2006) Production and X-ray crystallographic analysis of fully deuterated human carbonic anhydrase II. Acta Crystallograph Sect F Struct Biol Crystallogr 62(Pt 1):6-9
10. Chatake T, Tanaka I, Umino H, Arai S, Niimura N (2005) The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique. Acta Crystallogr D Biol Crystallogr 61(Pt 8):1088-1098
11. Chatake T, Ostermann A, Kurihara K, Parak FG, Mizuno N, Voordouw G, Higuchi Y, Tanaka I, Niimura N (2004) Hydration structures in proteins and neutron diffraction experiment on dissimilatory sulfite reductase D (DsrD). J Synchrotron Radiat 11(Pt 1):72-75
12. Chatake T, Ostermann A, Kurihara K, Parak FG, Niimura N (2003) Hydration in proteins observed by high-resolution neutron crystallography. Proteins 50(3):516-523
13. Cheng XD, Schoenborn BP (1991) Neutron diffraction study of carbonmonoxymyoglobin. J Mol Biol 220(2):381-399
14. Cipriani F, Dauvergne F, Gabriel A, Wilkinson C, Lehmann MS (1994) Image plate detectors for macromolecular neutron diffractometry. Biophys Chem 53:5-13
15. Cipriani F, Castagna JC, Wilkinson C, Lehmann MS, Buldt G (1996) A neutron image plate quasi-Laue diffractometer for protein crystallography. Basic Life Sci 64:423-431
16. Coates L, Erskine PT, Wood SP, Myles DA, Cooper JB (2001) A neutron Laue diffraction study of endothiapepsin: implications for the aspartic proteinase mechanism. Biochemistry 40(44):13149-13157
17. Cooper JB, Myles DA (2000) A preliminary neutron Laue diffraction study of the aspartic proteinase endothiapepsin. Acta Crystallogr D Biol Crystallogr 56(Pt 2):246-248
18. Daniels BV, Myles DA, Forsyth VT, Lawson CL (2003) Crystals of Trp repressor suitable for high-resolution neutron Laue diffraction studies. Acta Crystallogr D Biol Crystallogr 59(Pt 1):136-138
19. Dauter Z, Lamzin VS, Wilson KS (1997) The benefits of atomic resolution. Curr Opin Struct Biol 7(5):681-688
20. Engler N, Ostermann A, Niimura N, Parak FG (2003) Hydrogen atoms in proteins: positions and dynamics. Proc Natl Acad Sci USA 100(18):10243-10248
21. Habash J, Raftery J, Nuttall R, Price HJ, Wilkinson C, Kalb AJ, Helliwell JR (2000) Direct determination of the positions of the deuterium atoms of the bound water in-concanavalin A by neutron Laue crystallography. Acta Crystallogr D Biol Crystallogr 56 ( Pt 5):541-50
22. Hanson BL, Langan P, Katz AK, Li X, Harp JM, Glusker JP, Schoenborn BP, Bunick GJ (2004) A preliminary time-of-flight neutron diffraction study of Streptomyces rubiginosus D-xylose isomerase. Acta Crystallogr D Biol Crystallogr 60(Pt 2):241-249
23. Hazemann I, Dauvergne MT, Blakeley MP, Meilleur F, Haertlein M, Van Dorsselaer A, Mitschler A, Myles DA, Podjarny A (2005) High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase. Acta Crystallogr D Biol Crystallogr 61(Pt 10):1413-1417
24. Helliwell JR (1997) Neutron Laue diffraction does it faster. Nat Struct Biol 4(11):874-876
25. Høghøj P, Anderson IS, Ebisawa T, Takeda T (1996) Fabrication and performance of a large wavelength band multilayer monochromator. J Phys Soc Jpn 65:296-298
26. Howard EI, Sanishvili R, Cachau RE, Mitschler A, Chevrier B, Barth P, Lamour V, Van Zandt M, Sibley E, Bon C, Moras D, Schneider TR, Joachimiak A, Podjarny A (2004) Ultrahigh resolution drug design I: details of interactions in human aldose reductase-inhibitor complex at 0.66 A. Proteins 55(4):792-804
27. Korszun ZR (1997) Neutron macromolecular crystallography. Methods Enzymol 276: 219-232
28. Kossiakoff AA, Spencer SA (1981) Direct determination of the protonation states of aspartic acid-102 and histidine-57 in the tetrahedral intermediate of the serine proteases: neutron structure of trypsin. Biochemistry 20(22):6462-6474
29. Kurihara K, Tanaka I, Niimura N, Refai Muslih M, Ostermann A (2004) A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4). J Synchrotron Radiat 11:68-71
30. Langan P, Li X, Hanson BL, Coates L, Mustyakimov M (2006) Synthesis, capillary crystallization and preliminary joint X-ray and neutron crystallographic study of Z-DNA without polyamine at low pH. Acta Crystallogr F Biol Crystallogr 62
31. Lawson CL, Chin AS (2003) Analysis of neutron Laue diffraction from deuterium-exchanged Trp-repressor. Transactions ACA 38
32. Longhi S, Czjzek M, Cambillau C (1998) Messages from ultrahigh resolution crystal structures. Curr Opin Struct Biol 8(6):730-737
33. Li X, Langan P, Bau R, Tsyba I, Jenney FE Jr, Adams MW, Schoenborn BP (2004) W3Y single mutant of rubredoxin from Pyrococcus furiosus: a preliminary time-of-flight neutron study. Acta Crystallogr D Biol Crystallogr 60(Pt 1):200-202
34. Maeda M, Chatake T, Tanaka I, Ostermann A, Niimura N (2004) Crystallization of a large single crystal of cubic insulin for neutron protein crystallography. J Synchrotron Radiat 11(Pt 1):41-44
35. Mason SA, Bentley GA, McIntyre GJ (1984) Deuterium exchange in lysozyme at 1.4-A resolution. Basic Life Sci 27:323-234
36. Meilleur F, Snell EH, van der Woerd MJ, Judge RA, Myles DA (2006) A quasi-Laue neutron crystallographic study of D-xylose isomerase. Eur Biophys J (this issue)
37. Meilleur F, Blakeley MP, Myles DA (2005) Neutron Laue analysis of hydrogen and hydration in protein structure. In: Niimura N., Mizuno H., Helliwell J.R., Westhof E, (Eds) Hydrogen and hydration sensitive structural biology. pp 75-85
38. Meilleur F, Dauvergne MT, Schlichting I, Myles DA (2005) Production and X-ray crystallographic analysis of fully deuterated cytochrome P450cam. Acta Crystallogr D Biol Crystallogr 61(Pt5):539-544
39. Myles DA, Bon C, Langan P, Cipriani F, Castagna JC, Lehmann MS, Wilkinson C (1998) Neutron Laue diffraction in macromolecular crystallography. Physica B 241-243:1122-1130
40. Myles DA, Timmins PA, Wilkinson C (2000) ILL Millenium Programme, Document ILL01CA01T, pages 42-45
41. Myles DA (2003) Recent trends and advances in neutron macromolecular crystallography. Transactions ACA 38
42. Niimura N, Minezaki Y, Nonaka T, Castagna JC, Cipriani F, Hoghoj P, Lehmann MS, Wilkinson C (1997a) Neutron Laue diffractometry with an imaging plate provides an effective data collection regime for neutron protein crystallography. Nat Struct Biol 4(11):909-914
43. Niimura N (1999) Neutrons expand the field of structural biology. Curr Opin Struct Biol 9(5):602-608
44. Niimura N, Minezaki Y, Nonaka T, Castagna JC, Cipriani F, Hoghoj P, Lehmann MS, Wilkinson C (1997b) Neutron Laue diffractometry with an imaging plate provides an effective data collection regime for neutron protein crystallography. Nat Struct Biol 4(11):909-914
45. Ostermann A, Tanaka I, Engler N, Niimura N, Parak FG (2002) Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 Å resolution. Biophys Chem 95(3):183-193
46. Phillips SE, Schoenborn BP (1981) Neutron diffraction reveals oxygen-histidine hydrogen bond in oxymyoglobin. Nature 292(5818):81-82
47. Podjarny A, Cachau RE, Schneider T, Van Zandt M, Joachimiak A (2004) Subatomic and atomic crystallographic studies of aldose reductase: implications for inhibitor binding. Cell Mol Life Sci 61(7-8):763-773
48. Raghavan NV, Schoenborn BP (1984) The structure of bound water and refinement of acid metmyoglobin. Basic Life Sci 27:247-259
49. Schmidt A, Lamzin VS (2002) Veni, vidi, vici - atomic resolution unravelling the mysteries of protein function. Curr Opin Struct Biol 12(6):698-703
50. Schmidt A, Jelsch C, Ostergaard P, Rypniewski W, Lamzin VS (2003) Trypsin revisited: crystallography AT (SUB) atomic resolution and quantum chemistry revealing details of catalysis. J Biol Chem 278(44):43357-43362
51. Schoenborn BP, Langan P (2004) Protein crystallography with spallation neutrons. J Synchrotron Radiat 11:80-82
52. Schultz AJ, Thiyagarajan P, Hodges JP, Rehm C, Myles DA, Langan P, Mesecar AD (2005) Design of the next generation neutron macromolecular diffractometer (MaNDi) at the Spallation Neutron Source. J Appl Cryst 38:964-974
53. Shu F, Ramakrishnan V, Schoenborn BP (2000) Enhanced visibility of hydrogen atoms by neutron crystallography on fully deuterated myoglobin. Proc Natl Acad Sci USA 97(8):3872-3877
54. Snell EH, van der Woerd MJ, Damon M, Judge RA, Myles DA, Meilleur F (2006) Optimizing crystal volume for neutron diffraction: Xylose Isomerase. Eur Biophys J, this issue
55. Sukumar N, Langan P, Mathews FS, Jones LH, Thiyagarajan P, Schoenborn BP, Davidson VL (2005) A preliminary time-of-flight neutron diffraction study on amicyanin from Paracoccus denitrificans. Acta Crystallogr D Biol Crystallogr 61(Pt 5):640-642
56. Teeter MM, Kossiakoff AA (1984) The neutron structure of the hydrophobic plant protein crambin. In: Schoenborn B (ed) Neutrons in Biology. Plenum Press, New York, pp 335-348
57. Tuominen VU, Myles DA, Dauvergne MT, Lahti R, Heikinheimo P, Goldman A (2004) Production and preliminary analysis of perdeuterated yeast inorganic pyrophosphatase crystals suitable for neutron diffraction. Acta Crystallogr D Biol Crystallogr 60(Pt 3):606-609
58. Wlodawer A, Savage H, Dodson G (1989) Structure of insulin: results of joint neutron and X-ray refinement. Acta Crystallogr B 45( Pt 1):99-107
59. Wlodawer A, Sjolin L (1984) Application of joint neutron and x-ray refinement to the investigation of the structure of ribonuclease A at 2.0-A resolution. Basic Life Sci 27:349-364