Hydrogen atoms in proteins: Positions and dynamics

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 18, 2003, Pages 10243-10248

  Engler, Niklas ^a   Ostermann, Andreas ^a,b   Niimura, Nobuo ^b   Parak, Fritz G ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b JAPAN ATOMIC ENERGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN; PROTEIN;

ARTICLE; CALCULATION; CHEMICAL BOND; CRYSTAL STRUCTURE; NEUTRON SCATTERING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTON TRANSPORT; STRUCTURE ANALYSIS; X RAY DIFFRACTION;

HYDROGEN; MYOGLOBIN; NEUTRONS;

EID: 0042337439     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1834279100     Document Type: Article

References (34)

1. Frauenfelder, H., Sligar, S. G. & Wolynes, P. G. (1991) Science 254, 1598-1603.
2. Kossiakoff, A. A. & Spencer, S. A. (1981) Biochemistry 20, 6462-6474.
3. Schmidt, M., Meier, B. & Parak, F. (1996) J. Biol. Inorg. Chem. 1, 532-541.
4. Longhi, S., Czjzek, M., Lamzin, M., Nicolas, A. & Cambillau, C. (1997) J. Mol. Biol. 268, 779-799.
5. Kuhn, P., Knapp, M., Soltis, S. M., Ganshaw, G., Thoene, M. & Bott, R. (1998) Biochemistry 37, 13446-13452.
6. Jelsch, C., Teeter, M. M., Lamzin, V., Pichon-Pesme, V., Blessing, R. H. & Lecomte, C. (2000) Proc. Natl. Acad. Sci. USA 97, 3171-3176.
7. Berisio, R., Lamzin, V. S., Sica, F., Wilson, K. S., Zagari, A. & Mazzarella, L. (1999) J. Mol. Biol. 292, 845-854.
8. Vojtechovsky, J., Chu, K., Berendzen, J., Sweet, R. M. & Schlichting, I. (1999) Biophys. J. 77, 2153-2174.
9. Schoenborn, B. P. (1969) Nature 224, 143-146.
10. Shu, F., Ramakrishnan, V. & Schoenborn, B. P. (2000) Proc. Natl. Acad. Sci. USA 97, 3872-3877.
11. Bon, C., Lehmann, M. S. & Wilkinson, C. (1999) Acta Crystallogr. D 55, 978-987.
12. Kurihara, K., Tanaka, I., Adams, M. W. W., Jenney, F. E. J., Moiseeva, N., Bau, R. & Niimura, N. (2001) J. Phys. Soc. Jpn. Suppl. A 70, 400-402.
13. Ostermann, A., Tanaka, I., Engler, N., Niimura, N. & Parak, F. G. (2002) Biophys. Chem. 95, 183-193.
14. Niimura, N., Minezaki, Y., Nonaka, T., Castagna, J.-C., Cipriani, F., Hoghoj, P., Lehmann, M. S. & Wilkinson, C. (1997) Nat. Struct. Biol. 4, 909-914.
15. Coates, L., Erskine, P. T., Wood, S. P., Myles, D. A. A. & Cooper, J. B. (2001) Biochemistry 40, 13149-13157.
16. Habash, J., Raftery, J., Nuttall, R., Price, H. J., Wilkinson, C., Kalb, A. J. & Helliwell, J. R. (2000) Acta Crystallogr. D 56, 541-550.
17. Cipriani, F., Castagna, J.-C., Wilkinson, C., Oleinek, P. & Lehmann, M. S. (1996) J. Neutron Res. 4, 79-85.
18. Tanaka, I., Kurihara, K., Chatake, T. & Niimura, N. (2002) J. Appl. Crystallogr. 35, 34-40.
19. Parak, F. & Formanek, H. (1971) Acta Crystallogr. A 27, 573-578.
20. Keller, H. & Debrunner, P. G. (1980) Phys. Rev. Lett. 45, 68-71.
21. Parak, F., Knapp, E. W. & Kucheida, D. (1982) J. Mol. Biol. 161, 177-194.
22. Frauenfelder, H., Parak, F. & Young, R. D. (1988) Annu. Rev. Biophys. Biophys. Chem. 17, 451-479.
23. Chong, S.-H., Joti, Y., Kidera, A., Go, N., Ostermann, A., Gassmann, A. & Parak, F. G. (2001) Eur. Biophys. J. 30, 319-329.
24. Doster, W., Cusack, S. & Petry, W. (1989) Nature 337, 754-756.
25. Zaccai, G. (2000) Science 288, 1604-1607.
26. Otwinowsky, Z. & Minor, W. (1997) Methods Enzymol. 276, 307-326.
27. Bailey, S. (1994) Acta Crystallogr. D 50, 760-763.
28. Brünger, A. T. (1992) X-PLOR (Yale Univ. Press, New Haven, CT), Version 3.1.
29. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D 54, 905-921.
30. Kachalova, G. S., Popov, A. N. & Bartunik, H. D. (1999) Science 284, 473-476.
31. Brünger, A. T. & Karplus, M. (1988) Proteins 4, 148-156.
32. Smith, J., Kuczera, K. & Karplus, M. (1990) Proc. Natl. Acad. Sci. USA 87, 1601-1605.
33. Parak, F. G. (2003) Rep. Progr. Phys. 66, 103-129.
34. Jones, A. Zou, J. Y., Couran, S. W. & Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119.