메뉴 건너뛰기




Volumn 69, Issue 16-18, 2006, Pages 2236-2243

Margin-based wrapper methods for gene identification using microarray

Author keywords

Cancer classification; Feature selection; Genetic algorithms; Microarray data analysis; Support vector machines

Indexed keywords

ARTIFICIAL INTELLIGENCE; CLASSIFICATION (OF INFORMATION); DNA; FEATURE EXTRACTION; GENETIC ALGORITHMS; LEARNING SYSTEMS; SET THEORY;

EID: 33748432249     PISSN: 09252312     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neucom.2005.07.007     Document Type: Article
Times cited : (12)

References (29)
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U., Barkai N., Notterman D., Gish K., Ybarra S., Mack D., and Levine A. Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci., USA 96 (1999) 6745-6750
    • (1999) Proc. Natl. Acad. Sci., USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.7
  • 3
    • 0036372855 scopus 로고    scopus 로고
    • New feature subset selection procedures for classification of expression profiles
    • Bo T., and Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome Biol. 3 (2002) 0017.1-0017.11
    • (2002) Genome Biol. , vol.3
    • Bo, T.1    Jonassen, I.2
  • 4
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • Brazma A., and Vilo J. Gene expression data analysis. FEBS Lett. 480 (2000) 17-24
    • (2000) FEBS Lett. , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 5
    • 0035826360 scopus 로고    scopus 로고
    • Identification marker genes in transcription profiling data using a mixture of feature relevance experts
    • Chow M., Mole E., and Main I. Identification marker genes in transcription profiling data using a mixture of feature relevance experts. Physiol Genomics 5 (2001) 99-111
    • (2001) Physiol Genomics , vol.5 , pp. 99-111
    • Chow, M.1    Mole, E.2    Main, I.3
  • 8
    • 33748424740 scopus 로고    scopus 로고
    • S. Dudoit, J. Fridlyand, T. Speed, Comparison of discrimination methods for the classification of tumors using gene expression data, Technical Report 576, Statistics Department, UC Berkeley, 2002.
  • 9
    • 0002344794 scopus 로고
    • Bootstrap methods: another look at the jackknife
    • Efron B. Bootstrap methods: another look at the jackknife. Ann. Statist. 7 (1979) 1-26
    • (1979) Ann. Statist. , vol.7 , pp. 1-26
    • Efron, B.1
  • 11
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen M., and Brown P. DNA arrays for analysis of gene expression. Meth. Enzymol. 303 (1999) 179-205
    • (1999) Meth. Enzymol. , vol.303 , pp. 179-205
    • Eisen, M.1    Brown, P.2
  • 12
    • 0032441150 scopus 로고    scopus 로고
    • Clustering analysis and display of genome wide expression patterns
    • Eisen M., Spellman P., Brown P., and Botstein D. Clustering analysis and display of genome wide expression patterns. Proc. Natl. Acad. Sci., USA 95 (1998) 14863-14868
    • (1998) Proc. Natl. Acad. Sci., USA , vol.95 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 15
    • 0037093087 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in pancreatic cancer cells using cDNA microarray
    • Han H., Bearss D., Browne L., Calaluce R., Nagle R., and Von Hoff D. Identification of differentially expressed genes in pancreatic cancer cells using cDNA microarray. Cancer Res. 62 (2002) 2890-2896
    • (2002) Cancer Res. , vol.62 , pp. 2890-2896
    • Han, H.1    Bearss, D.2    Browne, L.3    Calaluce, R.4    Nagle, R.5    Von Hoff, D.6
  • 17
    • 0036450130 scopus 로고    scopus 로고
    • Gene selection by sequential search wrapper approaches in microarray cancer class prediction
    • Inza I., Sierra B., Blanco R., and Lerranaga P. Gene selection by sequential search wrapper approaches in microarray cancer class prediction. J. Intelligent Fuzzy Syst. 12 (2002) 25-33
    • (2002) J. Intelligent Fuzzy Syst. , vol.12 , pp. 25-33
    • Inza, I.1    Sierra, B.2    Blanco, R.3    Lerranaga, P.4
  • 18
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr M., Martin M., and Churchill G. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7 (2000) 819-825
    • (2000) J. Comput. Biol. , vol.7 , pp. 819-825
    • Kerr, M.1    Martin, M.2    Churchill, G.3
  • 19
    • 0034570871 scopus 로고    scopus 로고
    • Correspondence analysis of genes and tissue types and finding genetic links from microarray data
    • Kishino H., and Waddell P. Correspondence analysis of genes and tissue types and finding genetic links from microarray data. Genome Inf. 11 (2000) 83-95
    • (2000) Genome Inf. , vol.11 , pp. 83-95
    • Kishino, H.1    Waddell, P.2
  • 20
    • 0031381525 scopus 로고    scopus 로고
    • Wrapper for feature subset selection
    • Kohavi R., and John G. Wrapper for feature subset selection. Artif. Intell. 97 (1997) 531-537
    • (1997) Artif. Intell. , vol.97 , pp. 531-537
    • Kohavi, R.1    John, G.2
  • 21
    • 0035664710 scopus 로고    scopus 로고
    • Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method
    • Li L., Darden T., Weinberg C., and Pedersen L. Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method. Combin. Chem. High Throughput Screening 4 (2001) 727-739
    • (2001) Combin. Chem. High Throughput Screening , vol.4 , pp. 727-739
    • Li, L.1    Darden, T.2    Weinberg, C.3    Pedersen, L.4
  • 22
    • 0036139278 scopus 로고    scopus 로고
    • Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/kNN method
    • Li L., Weinberg C., Darden T., and Pedersen L. Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/kNN method. Bioinformatics 17 (2001) 1131-1142
    • (2001) Bioinformatics , vol.17 , pp. 1131-1142
    • Li, L.1    Weinberg, C.2    Darden, T.3    Pedersen, L.4
  • 23
    • 0035827588 scopus 로고    scopus 로고
    • Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework
    • Long A., Mangalam H., Chan B., Tolleri L., Hatfield G., and Baldi P. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. J. Biol. Chem. 276 (2001) 19937-19944
    • (2001) J. Biol. Chem. , vol.276 , pp. 19937-19944
    • Long, A.1    Mangalam, H.2    Chan, B.3    Tolleri, L.4    Hatfield, G.5    Baldi, P.6
  • 24
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: improved statistical inference about gene expression changes from microarray data
    • Newton M., Kendziorski C., Richmond C., Blattner F., and Tsui K. On differential variability of expression ratios: improved statistical inference about gene expression changes from microarray data. J. Comput. Biol. 8 (2001) 37-52
    • (2001) J. Comput. Biol. , vol.8 , pp. 37-52
    • Newton, M.1    Kendziorski, C.2    Richmond, C.3    Blattner, F.4    Tsui, K.5
  • 26
    • 0001027292 scopus 로고    scopus 로고
    • Gelsolin, a multifunctional actin regulatory protein
    • Sun H., Yamamoto M., Mejillano M., and Yin H. Gelsolin, a multifunctional actin regulatory protein. Biol. Chem. 274 (1999) 32529-32530
    • (1999) Biol. Chem. , vol.274 , pp. 32529-32530
    • Sun, H.1    Yamamoto, M.2    Mejillano, M.3    Yin, H.4
  • 28
    • 0033571167 scopus 로고    scopus 로고
    • Hypoxia-induced elevation in interleukin-8 expression by human ovarian carcinoma cells
    • Xu L., Xie K., Mukaida N., Matsushima K., and Fidler I. Hypoxia-induced elevation in interleukin-8 expression by human ovarian carcinoma cells. Cancer Res. 59 (1999) 5822-5829
    • (1999) Cancer Res. , vol.59 , pp. 5822-5829
    • Xu, L.1    Xie, K.2    Mukaida, N.3    Matsushima, K.4    Fidler, I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.