Solution scattering studies of conformation stability of xylanase XYNII from Trichoderma longibrachiatum

Biopolymers

Volumn 83, Issue 1, 2006, Pages 95-102

  Kozak, Maciej ^a  

^a ADAM MICKIEWICZ UNIVERSITY   (Poland)

Author keywords

Enzyme; Hydrolysis; Small angle scattering; Wide angle scattering; Xylan; Xylanase

Indexed keywords

CATALYSIS; CRYSTAL SYMMETRY; HYDROLYSIS; MOLECULAR DYNAMICS; SYNCHROTRON RADIATION; X RAY SCATTERING;

SMALL ANGLE SCATTERING; WIDE ANGLE SCATTERING; XYLAN; XYLANASE;

ENZYMES;

UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE; ZYLANASE II ENZYME;

AB INITIO CALCULATION; ARTICLE; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME STRUCTURE; LIGHT SCATTERING; PROTEIN CONFORMATION; PROTEIN STABILITY; SYNCHROTRON RADIATION; TRICHODERMA;

BIOPOLYMERS; CRYSTALLOGRAPHY, X-RAY; ENDO-1,4-BETA XYLANASES; ENZYME STABILITY; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; PROTEIN CONFORMATION; SCATTERING, RADIATION; SOLUTIONS; SYNCHROTRONS; TRICHODERMA; X-RAYS;

HYPOCREA JECORINA; TRICHODERMA; TRICHODERMA LONGIBRACHIATUM;

EID: 33748340867     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20531     Document Type: Article

References (48)

1. Koch, M. H. J.; Vachette, P.; Svergun, D. I. Quart Rev Biophys 2003, 36, 147-227.
2. Forstner, M. J Appl Cryst 2000, 33, 519-523.
3. Petoukhov, M. V.; Svergun, D. I. Biophys J 2005, 89, 1237-1250.
4. Svergun, D. I.; Koch, M. H. J. Curr Opin Struct Biol 2002, 12, 654-660.
5. Beg, Q. K.; Kapoor, M.; Mahajan, L.; Hoondal, G. S. Appl Microbiol Biotechnol 2001, 56, 326-338.
6. Parkkinen, T.; Hakulinen, M. T.; Tenkanen, M.; Siikaaho, M.; Rouvinen, J. Acta Cryst D 2004, 60, 542-544.
7. Henrissat, B.; Bairoch, A. Biochem J 1993, 298, 781-788.
8. Törrönen, A.; Harkki, A.; Rouvinen, J. EMBO J 1994, 13, 2493-2501.
9. Törrönen, A.; Rouvinen, J. Biochemistry 1995, 34, 847-856.
10. Törrönen, A.; Rouvinen, J. J Biotechnol 1997, 57, 137-149.
11. Moiseeva, N.; Allaire, M. Acta Cryst D 2004, 60, 1275-1277.
12. Fushinobu, S.; Ito, K.; Konno, M.; Wakagi, T.; Matsuzawa, H. Protein Eng 1998, 11, 1121-1128.
13. Krengel, U.; Dijkstra, B.W. J Mol Biol 1996, 263, 70-78.
14. Sabini, E.; Sulzenbacher, G.; Dauter, M.; Dauter, Z.; Jørgensen, P. L.; Schülein, M.; Dupont, C.; Davies, J. G.; Wilson, K. S. Chem Biol 1999, 6, 483-492.
15. Wakarchuk, W. W.; Campbell, R. L.; Sung, W. L.; Davoodi, J.; Yaguchi, M. Protein Sci 1994, 3, 467-475.
16. Sidhu, G.; Withers, S. G.; Nguyen, N. T.; McIntosh, L. P.; Ziser, L.; Brayeer, G. D. Biochemistry 1999, 38, 5346-5354.
17. Harris, G. W.; Pickersgill, R. W.; Connerton, I.; Debeire, P.; Touzel, J. P.; Breton, C.; Perez, S. Proteins 1997, 29, 77-86.
18. Oakley, A. J.; Heinrich, T.; Thompson, C. A.; Wilce, M. C. J. Acta Cryst D 2003, 59, 627-636.
19. Hakulinen, N.; Turunen, O.; Jönis, J.; Leisola, M.; Rouvinen, J. Eur J Biochem 2003, 270, 1399-1412.
20. McCarthy, A. A.; Morris, D. D.; Bergquist, P. L.; Baker, E. N. Acta Cryst. D 2000, 56, 1367-1375.
21. Kumar, P. R.; Eswaramoorthy, S.; Vithayathil, P. J.; Viswamitra, M. A. J Mol Biol 2000, 295, 581-593.
22. Payan, F.; Leone, P.; Porciero, S.; Furniss, C.; Tahir, T.; Williamson, G.; Durand, A.; Manzanares, P.; Gilbert, H. J.; Juge, N.; Roussel, A. J Biol Chem. 2004, 279, 36029-36037.
23. Wouters, J.; Georis, J.; Engher, D.; Vandenhaute, J.; Dusart, J.; Frere, J. M.; Charlier, P. Acta Cryst D 2001, 57, 1813-1819.
24. Gruber, K.; Klintschar, G.; Hayn, M.; Schlacher, A.; Steiner, W.; Kratky, C. Biochemistry 1998, 37, 13475-13485.
25. Campbell, R. L.; Rose, D. R.; Wakarchuk, W. W.; To, R.; Sung, W.; Yaguchi, M. Found Biotechn Indust Ferment Res 1993, 8, 63-72.
26. Gill, S. C.; Von Hippel, P. H. Anal Biochem 1989, 182, 319-326.
27. Koch, M. H. J.; Bordas, J. Nucl Instrum Methods 1983, 208, 461-469.
28. Boulin, C.; Kempf, R.; Koch, M. H. J.; McLaughlin, S. Nucl Instrum Methods A 1986, 249, 399-407.
29. Boulin, C. J.; Kempf, R.; Gabriel, A.; Koch, M. H. J. Nucl Instrum Methods Phys Res A 1988, 269, 312-320.
30. Bear, R. S. J Am Chem Soc 1944, 66, 1297-1305.
31. Huang, T. C.; Toraya, H.; Blanton, T. N.; Wu, Y. J Appl Cryst 1993, 26, 180-184.
32. Konarev, P. V.; Volkov, V. V.; Sokolova, A. V.; Koch, M. H. J.; Svergun, D. I. J Appl Cryst 2003, 36, 1277-1282.
33. Guinier, A. Ann Phys 1939, 12, 166-237.
34. Kozak, M. J Appl Cryst 2005, 38, 555-558.
35. Svergun, D. I. J Appl Cryst 1992, 25, 495-503
36. Cohen, G. H. J Appl Cryst 1997, 30, 1160-1161.
37. Svergun, D. I. Biophys J 1999, 76, 2879-2886.
38. Chacón, P.; Morán, F.; Díaz, J. F.; Pantos, E.; Andreu, J. M. Biophys J 1998, 74, 2760-2775.
39. Svergun, D. I.; Petoukhov, M. V.; Koch, M. H. J. Biophys J 2001, 80, 2946-2953.
40. Debye, P. Ann Phys 1915, 46, 809-823.
41. Johnston, R. L., Ed. Applications of Evolutionary Computation in Chemistry, Series: Structure and Bonding, Vol. 110; Springer: New York, 2004.
42. Chacón, P.; Díaz, J. F.; Morán, F.; Andreu, J. M. J Mol Biol 2000, 299, 1289-1302.
43. Kozak M. Protein Pept Lett 2004, 11, 301-306.
44. Xiong, H.; Fenel, F.; Leisola, M.; Turunen, O. Extremophiles 2004, 8, 393-400.
45. Jännis, J.; Rouvinen, J.; Leisola, M.; Turunen, O.; Vainiotalo, P. Biochem J 2001, 356, 453-460.
46. Muilu, J.; Törrönen, A.; Peräkylä, M.; Rouvinen, J. Proteins 1998, 31, 434-444.
47. Havukainen, R.; Törrönen, A.; Laitinen, T.; Rouvinen, J. Biochemistry 1996, 35, 9617-9624.
48. Sayle, R. A.; Milnerwhite, E. J. Trends Biochem Sci 1995, 20, 374-376.