The tertiary structure at 1.59 Å resolution and the proposed amino acid sequence of a family-11 xylanase from the thermophilic fungus Paecilomyces varioti Bainier

Journal of Molecular Biology

Volumn 295, Issue 3, 2000, Pages 581-593

  Kumar, P Rajesh ^a   Eswaramoorthy, S ^a   Vithayathil, Paul J ^a   Viswamitra, M A ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

Amino acid sequence; Crystal structure; Family 11 xylanase; Thermostability; Weaker interactions

Indexed keywords

FUNGAL PROTEIN; XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME CONFORMATION; ENZYME STABILITY; NONHUMAN; PAECILOMYCES; PRIORITY JOURNAL; PROTEIN TERTIARY STRUCTURE; STRUCTURE ANALYSIS;

FUNGI; PAECILOMYCES; PAECILOMYCES VARIOTII; POTATO VIRUS X; THERMOMYCES LANUGINOSUS;

EID: 0034695422     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3348     Document Type: Article

References (70)

1. The crusade against chlorine
2. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
3. Ion-pairs in proteins
4. The Protein Data Bank: A computer-based archival file for macromolecular structures
5. Microbial xylanolytic systems
6. Free R-value: A novel statistical quantity for assessing the accuracy of crystal structures
7. Crystallographic R-factor refinement by molecular dynamics
8. Slow-cooling protocols for crystallographic refinement by simulated annealing
9. Aromatic-aromatic interaction: A mechanism of protein structure stabilisation
10. Paecilomyces varioti pneumonia in a patient with diabetes mellitus
11. The CCP4 suite: Programs for protein crystallography
12. Hyalo-hyphomycosis by Paecilomyces lilacinus in a renal transplant patient and a review of human Paecilomyces species infections
13. Characterization of a buried neutral histidine in Bacillus circulans xylanase: Internal dynamics and interaction with a bound water molecule
14. The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
15. (His)C(α)-H··· O=C < hydrogen bond in the activesites of serine hydrolases
16. The occurrence of C-H··· O hydrogen bonds in proteins
17. Chronic suppurative otitis media caused by Paecilomyces varioti
18. Accurate bond angle parameters of X-ray protein structure refinement
19. BOBSCRIPT: A program to produce both detailed and schematic plots of protein structures
20. Crystallisation and preliminary X-ray crystallographic studies of thermostable xylanase crystals isolated from Paecilomyces varioti
21. C-H···O hydrogen bonds in β-sheets
22. Helix stabilizing factors and stabilisation of thermophilic proteins: An X-ray based study
23. Principles of protein stability derived from protein engineering experiments
24. Stereoselective hydrolysis catalyzed by related beta-1,4-glucanases and beta-1,4-xylanases
25. Domains in microbial β-1,4-glycanases: Sequence conservation, function and enzyme families
26. Thermophilic xylanase from Thermomyces lanuginosus: High resolution X-ray structure and modelling studies
27. Structural basis of the properties of an industrially relevant thermophilic xylanase
28. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
29. Structural and sequence based classification of glycoside hydrolases
30. Model bias in macromolecular crystal structures
31. The PROSITE database, its status in 1999
32. VMD - Visual molecular dynamics
33. Stabilization of a protein by removal of unfavourable abnormal pK(a): Substitution of undissociable residue for glutamic acid-35 in chicken lysozyme
34. Protein hydration observed by X-ray diffraction. Solvation properties of pencillopepsin and neuraminidase crystal structures
35. Improved methods for building models in electron-density maps and the location of errors in these models
36. Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector
37. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
38. Proteins from thermophilic and mesophilic organisms essentially do not differ in packing
39. Checking your imagination: Applications of the free R value
40. Detection, delineation, measurement and display of cavities
41. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
42. Cleavage of structural proteins during the assembly of the head of bacteriophage T4
43. SURFNET: A programs for visualising molecular surfaces, cavities and intermolecular interactions
44. PROCHECK: A program to check the stereochemical quality of protein structures
45. Positioning the acid/base catalyst in a glycosidase: Studies with Bacillus circulans xylanase
46. Solvent content of protein crystals
47. The application of hydrogen bonding analysis in X-ray crystallography to help orientate asparagine, glutamine and histidine side-chains
48. Raster3D-photorealistic molecular graphics
49. JOY: Protein sequence-structure representation and analysis
50. Refinement of macromolecular structures by the maximum-likelihood method
51. AMoRe: An automated package for molecular replacement
52. Occluded molecular surface: Analysis of protein packing
53. Analysis of protein conformational characteristics related to thermostability
54. Improved Fourier coefficients for maps using phases from partial structures with errors
55. Definition of topological equivalence in protein structures - A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
56. Paecilomyces varioti fungemia in a bone marrow transplant
57. Allergy from cellulase and xylanase enzymes
58. Structural comparison of two major endo-1,4-xylanases from Trichoderma reesei
59. Structural and functional properties of low molecular weight endo-1,4-β-xylanases
60. Three-dimensional structure of endo-1,4-β-xylanase II from Trichoderma reesei: Two conformation states in the active-site
61. Xylanases in bleaching: From an idea to the industry
62. Protein thermal stability: Hydrogen bonds or internal packing?
63. Protein thermal stability, hydrogen bonds and ion pairs
64. Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds
65. Mutational and crystallographic analyses of the active-site residues of the Bacillus circulans xylanase
66. Buried waters and internal cavities in monomeric proteins
67. A variable gap penalty function and feature weights for protein 3-D structure comparisons