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Volumn 242, Issue 3, 2006, Pages 564-580

Classification of the possible pairs between the first anticodon and the third codon positions based on a simple model assuming two geometries with which the pairing effectively potentiates the decoding complex

Author keywords

Aminoacyl tRNA selection; Base pair geometry; Codon anticodon interaction; Modified nucleoside; Wobble rule

Indexed keywords

4 ACETYLCYTIDINE; 5 FORMYLCYTIDINE; ADENOSINE; CYTIDINE DERIVATIVE; QUEUOSINE; TRANSFER RNA; UNCLASSIFIED DRUG; URIDINE DERIVATIVE;

EID: 33747883008     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.04.009     Document Type: Article
Times cited : (10)

References (100)
  • 1
    • 0026343194 scopus 로고
    • Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified wobble hypothesis
    • Agris P.F. Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified wobble hypothesis. Biochimie 73 (1991) 1345-1349
    • (1991) Biochimie , vol.73 , pp. 1345-1349
    • Agris, P.F.1
  • 2
    • 1242309517 scopus 로고    scopus 로고
    • Decoding the genome: a modified view
    • Agris P.F. Decoding the genome: a modified view. Nucl. Acids Res. 32 (2004) 223-238
    • (2004) Nucl. Acids Res. , vol.32 , pp. 223-238
    • Agris, P.F.1
  • 3
    • 0024415902 scopus 로고
    • Codon recognition pattern as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum
    • Andachi Y., Yamao F., Muto A., and Osawa S. Codon recognition pattern as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. J. Mol. Biol. 209 (1989) 37-54
    • (1989) J. Mol. Biol. , vol.209 , pp. 37-54
    • Andachi, Y.1    Yamao, F.2    Muto, A.3    Osawa, S.4
  • 5
    • 0001668782 scopus 로고
    • The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts
    • Beier H., Barciszewska M., and Sickinger H.-D. The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts. EMBO J. 3 (1984) 1091-1096
    • (1984) EMBO J. , vol.3 , pp. 1091-1096
    • Beier, H.1    Barciszewska, M.2    Sickinger, H.-D.3
  • 7
    • 0036295962 scopus 로고    scopus 로고
    • Chen, P., Qian, Q., Zhang, S., Isaksson, L. A., Björk, G. R., 2002. A cytosolic tRNA with an unmodified adenosine in the wobble position reads a codon ending with the non-complementary nucleoside cytidine. J. Mol. Biol. 317, 481-492.
  • 8
    • 0022606026 scopus 로고
    • Glu from Clostridium sticklandii
    • Glu from Clostridium sticklandii. Arch. Biochem. Biophys. 244 (1986) 137-146
    • (1986) Arch. Biochem. Biophys. , vol.244 , pp. 137-146
    • Ching, W.M.1
  • 10
    • 18844408328 scopus 로고    scopus 로고
    • An active role for tRNA in decoding beyond codon:anticodon pairing
    • Cochella L., and Green R. An active role for tRNA in decoding beyond codon:anticodon pairing. Science 308 (2005) 1178-1180
    • (2005) Science , vol.308 , pp. 1178-1180
    • Cochella, L.1    Green, R.2
  • 11
    • 0013936167 scopus 로고
    • Codon-anticodon pairing: the wobble hypothesis
    • Crick F.H.C. Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19 (1966) 548-555
    • (1966) J. Mol. Biol. , vol.19 , pp. 548-555
    • Crick, F.H.C.1
  • 12
    • 0028899217 scopus 로고
    • Decoding with the A:I wobble pair is inefficient
    • Curran J.F. Decoding with the A:I wobble pair is inefficient. Nucl. Acids Res. 23 (1995) 683-688
    • (1995) Nucl. Acids Res. , vol.23 , pp. 683-688
    • Curran, J.F.1
  • 13
    • 0002090634 scopus 로고    scopus 로고
    • Modified nucleosides in translation
    • Grosjean H., and Benne R. (Eds), ASM Press, Washington, DC, USA
    • Curran J.F. Modified nucleosides in translation. In: Grosjean H., and Benne R. (Eds). Modification and Editing of RNA (1998), ASM Press, Washington, DC, USA 493-516
    • (1998) Modification and Editing of RNA , pp. 493-516
    • Curran, J.F.1
  • 14
    • 0036952706 scopus 로고    scopus 로고
    • An unexpected absence of queuosine modification in the tRNAs of an Escherichia coli B strain
    • Dineshkumar T.K., Thanedar S., Subbulakshmi C., and Varshney U. An unexpected absence of queuosine modification in the tRNAs of an Escherichia coli B strain. Microbiology 148 (2002) 3779-3787
    • (2002) Microbiology , vol.148 , pp. 3779-3787
    • Dineshkumar, T.K.1    Thanedar, S.2    Subbulakshmi, C.3    Varshney, U.4
  • 15
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Eschericha coli at different growth rates
    • Dong H., Nilsson L., and Kurland C.G. Co-variation of tRNA abundance and codon usage in Eschericha coli at different growth rates. J. Mol. Biol. 260 (1996) 649-663
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 16
    • 0014694171 scopus 로고
    • On N-H...S hydrogen bonds
    • Donohue J. On N-H...S hydrogen bonds. J. Mol. Biol. 45 (1969) 231-235
    • (1969) J. Mol. Biol. , vol.45 , pp. 231-235
    • Donohue, J.1
  • 18
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
    • Gromadski K.B., and Rodnina M.V. Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Mol. Cell 13 (2004) 191-200
    • (2004) Mol. Cell , vol.13 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 19
    • 0032553438 scopus 로고    scopus 로고
    • Lys with hypermodified derivatives of 5-methylaminomethyl-2thiouridine in the wobble position
    • Lys with hypermodified derivatives of 5-methylaminomethyl-2thiouridine in the wobble position. J. Mol. Biol. 284 (1998) 33-42
    • (1998) J. Mol. Biol. , vol.284 , pp. 33-42
    • Hagervall, T.G.1    Pomerantz, S.C.2    McCloskey, J.A.3
  • 20
    • 0015514384 scopus 로고
    • Asp from Escherichia coli B. Universal presence of nucleoside Q in the first position of the anticodon of three transfer ribonucleic acids
    • Asp from Escherichia coli B. Universal presence of nucleoside Q in the first position of the anticodon of three transfer ribonucleic acids. Biochemistry 11 (1972) 301-308
    • (1972) Biochemistry , vol.11 , pp. 301-308
    • Harada, F.1    Nishimura, S.2
  • 21
    • 0040456003 scopus 로고
    • Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs
    • Heckman J.E., Sarnoff J., Alzner-DeWeerd B., Yin S., and RajBhandary U.L. Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs. Proc. Natl Acad. Sci. USA 77 (1980) 3159-3163
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 3159-3163
    • Heckman, J.E.1    Sarnoff, J.2    Alzner-DeWeerd, B.3    Yin, S.4    RajBhandary, U.L.5
  • 22
    • 0015223081 scopus 로고
    • Tryptophan transfer RNA as the UGA suppressor
    • Hirsh D. Tryptophan transfer RNA as the UGA suppressor. J. Mol. Biol. 58 (1971) 439-444
    • (1971) J. Mol. Biol. , vol.58 , pp. 439-444
    • Hirsh, D.1
  • 23
    • 0000359208 scopus 로고
    • Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • Hopfield J.J. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA 71 (1974) 4135-4139
    • (1974) Proc. Natl Acad. Sci. USA , vol.71 , pp. 4135-4139
    • Hopfield, J.J.1
  • 25
    • 0019474499 scopus 로고
    • Correlation between the abundance of Eschericha coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • Ikemura T. Correlation between the abundance of Eschericha coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 146 (1981) 1-21
    • (1981) J. Mol. Biol. , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 26
    • 22544480568 scopus 로고    scopus 로고
    • Molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition
    • Ikeuchi Y., Soma A., Ote T., Kato J., Sekine Y., and Suzuki T. Molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition. Mol. Cell 19 (2005) 235-246
    • (2005) Mol. Cell , vol.19 , pp. 235-246
    • Ikeuchi, Y.1    Soma, A.2    Ote, T.3    Kato, J.4    Sekine, Y.5    Suzuki, T.6
  • 27
    • 0029123275 scopus 로고
    • Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position
    • Inagaki Y., Kojima A., Bessho Y., Hori H., Ohama T., and Osawa S. Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position. J. Mol. Biol. 251 (1995) 486-492
    • (1995) J. Mol. Biol. , vol.251 , pp. 486-492
    • Inagaki, Y.1    Kojima, A.2    Bessho, Y.3    Hori, H.4    Ohama, T.5    Osawa, S.6
  • 28
    • 0021165579 scopus 로고
    • Codon specificity of starvation induced misreading
    • Johnston T.C., Borgia P.T., and Parker J. Codon specificity of starvation induced misreading. Mol. Gen. Genet. 195 (1984) 459-465
    • (1984) Mol. Gen. Genet. , vol.195 , pp. 459-465
    • Johnston, T.C.1    Borgia, P.T.2    Parker, J.3
  • 29
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • Kanaya S., Yamada Y., Kudo Y., and Ikemura T. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238 (1999) 143-155
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 30
    • 0037415690 scopus 로고    scopus 로고
    • Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism
    • Kaneko T., Suzuki T., Kapushoc S.T., Rubio M.A., Ghazvini J., Watanabe K., Simpson L., and Suzuki T. Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism. EMBO J. 22 (2003) 657-667
    • (2003) EMBO J. , vol.22 , pp. 657-667
    • Kaneko, T.1    Suzuki, T.2    Kapushoc, S.T.3    Rubio, M.A.4    Ghazvini, J.5    Watanabe, K.6    Simpson, L.7    Suzuki, T.8
  • 31
    • 0025141883 scopus 로고
    • The difference in the typw of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate
    • Kato M., Nishikawa K., Uritani M., Miyazaki M., and Takemura S. The difference in the typw of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate. J. Biochem. 107 (1990) 242-247
    • (1990) J. Biochem. , vol.107 , pp. 242-247
    • Kato, M.1    Nishikawa, K.2    Uritani, M.3    Miyazaki, M.4    Takemura, S.5
  • 34
    • 6344221310 scopus 로고    scopus 로고
    • Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease
    • Kirino Y., Yasukawa T., Ohta S., Akira S., Ishihara K., Watanabe K., and Suzuki T. Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease. Proc. Natl Acad. Sci. USA 101 (2004) 15070-15075
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 15070-15075
    • Kirino, Y.1    Yasukawa, T.2    Ohta, S.3    Akira, S.4    Ishihara, K.5    Watanabe, K.6    Suzuki, T.7
  • 35
    • 0345345078 scopus 로고
    • "Two out of three": an alternative method for codon reading
    • Lagerkvist U. "Two out of three": an alternative method for codon reading. Proc. Natl Acad. Sci. USA 75 (1978) 1759-1762
    • (1978) Proc. Natl Acad. Sci. USA , vol.75 , pp. 1759-1762
    • Lagerkvist, U.1
  • 36
    • 0019412323 scopus 로고
    • Unorthodox codon reading and the evolution of the genetic code
    • Lagerkvist U. Unorthodox codon reading and the evolution of the genetic code. Cell 23 (1981) 305-306
    • (1981) Cell , vol.23 , pp. 305-306
    • Lagerkvist, U.1
  • 37
    • 0031571595 scopus 로고    scopus 로고
    • Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner
    • Li J., Esverg B., Curran J.F., and Björk G. Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner. J. Mol. Biol. 271 (1997) 209-221
    • (1997) J. Mol. Biol. , vol.271 , pp. 209-221
    • Li, J.1    Esverg, B.2    Curran, J.F.3    Björk, G.4
  • 38
    • 0028069147 scopus 로고
    • Analysis of action of wobble nucleoside modifications on codon-anticodon pairing within the ribosome
    • Lim V.I. Analysis of action of wobble nucleoside modifications on codon-anticodon pairing within the ribosome. J. Mol. Biol. 240 (1994) 8-19
    • (1994) J. Mol. Biol. , vol.240 , pp. 8-19
    • Lim, V.I.1
  • 39
    • 0029084597 scopus 로고
    • Analysis of action of the wobble adenine on codon reading within the ribosome
    • Lim V.I. Analysis of action of the wobble adenine on codon reading within the ribosome. J. Mol. Biol. 252 (1995) 277-282
    • (1995) J. Mol. Biol. , vol.252 , pp. 277-282
    • Lim, V.I.1
  • 40
    • 0034961959 scopus 로고    scopus 로고
    • Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure
    • Lim V.I., and Curran J.F. Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure. RNA 7 (2001) 942-957
    • (2001) RNA , vol.7 , pp. 942-957
    • Lim, V.I.1    Curran, J.F.2
  • 41
    • 0026495563 scopus 로고
    • Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites
    • Lim V.I., and Venclovas C. Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites. FEBS Lett. 313 (1992) 133-137
    • (1992) FEBS Lett. , vol.313 , pp. 133-137
    • Lim, V.I.1    Venclovas, C.2
  • 42
    • 0027530123 scopus 로고
    • The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons
    • Lustig F., Boren T., Claesson C., Simonsson C., Barciszewska M., and Lagerkvist U. The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons. Proc. Natl Acad. Sci. USA 90 (1993) 3343-3347
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3343-3347
    • Lustig, F.1    Boren, T.2    Claesson, C.3    Simonsson, C.4    Barciszewska, M.5    Lagerkvist, U.6
  • 43
    • 0036792830 scopus 로고    scopus 로고
    • tRNomics: analysis of tRNA genes from 50 genomes of eukarya, archaea, and bacteria reveals anticodon-sparing strategies and domain-specific features
    • Marck C., and Grosjean H. tRNomics: analysis of tRNA genes from 50 genomes of eukarya, archaea, and bacteria reveals anticodon-sparing strategies and domain-specific features. RNA 8 (2002) 1189-1232
    • (2002) RNA , vol.8 , pp. 1189-1232
    • Marck, C.1    Grosjean, H.2
  • 44
    • 0032488826 scopus 로고    scopus 로고
    • A novel wobble rule found in starfish mitochondria. Presence of 7-methylguanosine at the anticodon wobble position expands decoding capability of tRNA
    • Matsuyama S., Ueda T., Crain P.F., McCloskey J.A., and Watanabe K. A novel wobble rule found in starfish mitochondria. Presence of 7-methylguanosine at the anticodon wobble position expands decoding capability of tRNA. J. Biol. Chem. 273 (1998) 3363-3368
    • (1998) J. Biol. Chem. , vol.273 , pp. 3363-3368
    • Matsuyama, S.1    Ueda, T.2    Crain, P.F.3    McCloskey, J.A.4    Watanabe, K.5
  • 45
    • 0018086876 scopus 로고
    • Stacking of Crick wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction
    • Mizuno H., and Sundaralingam M. Stacking of Crick wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction. Nucl. Acids Res. 5 (1978) 4451-4461
    • (1978) Nucl. Acids Res. , vol.5 , pp. 4451-4461
    • Mizuno, H.1    Sundaralingam, M.2
  • 47
    • 0019783836 scopus 로고
    • In vivo decoding rules in Schizosaccharomyces pombe are at variance with in vitro data
    • Munz P., Leupold U., Agris P., and Kohli J. In vivo decoding rules in Schizosaccharomyces pombe are at variance with in vitro data. Nature 294 (1981) 187-188
    • (1981) Nature , vol.294 , pp. 187-188
    • Munz, P.1    Leupold, U.2    Agris, P.3    Kohli, J.4
  • 49
    • 0023734317 scopus 로고
    • Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
    • Muramatsu T., Nishikawa K., Nemoto F., Kuchino Y., Nishimura S., Miyazawa T., and Yokoyama S. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336 (1988) 179-181
    • (1988) Nature , vol.336 , pp. 179-181
    • Muramatsu, T.1    Nishikawa, K.2    Nemoto, F.3    Kuchino, Y.4    Nishimura, S.5    Miyazawa, T.6    Yokoyama, S.7
  • 50
    • 0014955806 scopus 로고
    • Uridin-5-oxy acetic acid: a new minor constituent from E. coli valine transfer RNA I
    • Murao K., Saneyoshi M., Harada F., and Nishimura S. Uridin-5-oxy acetic acid: a new minor constituent from E. coli valine transfer RNA I. Biochem. Biophys. Res. Commun. 38 (1970) 657-662
    • (1970) Biochem. Biophys. Res. Commun. , vol.38 , pp. 657-662
    • Murao, K.1    Saneyoshi, M.2    Harada, F.3    Nishimura, S.4
  • 52
    • 16544374004 scopus 로고    scopus 로고
    • Structure of purine-purine wobble base pair in the decoding center of the ribosome
    • Murphy IV F.V., Ramakrishnan V., Malkiewicz A., and Agris P. Structure of purine-purine wobble base pair in the decoding center of the ribosome. Nat. Struct. Mol. Biol. 11 (2004) 1251-1253
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 1251-1253
    • Murphy IV, F.V.1    Ramakrishnan, V.2    Malkiewicz, A.3    Agris, P.4
  • 53
    • 0342614926 scopus 로고    scopus 로고
    • Codon usage tabulated from international DNA sequence databases: status for the year 2000
    • Nakamura Y., Gojobori T., and Ikemura T. Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucl. Acids Res. 28 (2000) 292
    • (2000) Nucl. Acids Res. , vol.28 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 54
    • 4644266760 scopus 로고    scopus 로고
    • UGG promotes reading of all four proline codons in vivo
    • UGG promotes reading of all four proline codons in vivo. RNA 10 (2004) 1662-1673
    • (2004) RNA , vol.10 , pp. 1662-1673
    • Näsvall, S.J.1    Chen, P.2    Björk, G.R.3
  • 55
    • 0020653505 scopus 로고
    • Structure, biosynthesis, and function of queuosine in transfer RNA
    • Nishimura S. Structure, biosynthesis, and function of queuosine in transfer RNA. Prog. Nucl. Acid Res. Mol. Biol. 28 (1983) 49-73
    • (1983) Prog. Nucl. Acid Res. Mol. Biol. , vol.28 , pp. 49-73
    • Nishimura, S.1
  • 57
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to closed form
    • Ogle J.M., Murphy F.V., Tarry M.J., and Ramakrishnan V. Selection of tRNA by the ribosome requires a transition from an open to closed form. Cell 111 (2002) 721-732
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 59
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome
    • Pape T., Wintermeyer W., and Rodnina M.V. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J. 17 (1998) 7490-7497
    • (1998) EMBO J. , vol.17 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 60
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in the initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • Pape T., Wintermeyer W., and Rodnina M.V. Induced fit in the initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J. 18 (1999) 3800-3807
    • (1999) EMBO J. , vol.18 , pp. 3800-3807
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 61
    • 0021112509 scopus 로고
    • Codon usage and mistranslation. In vivo basal level misreading of the MS2 coat protein message
    • Parker J., Johnston T.C., Borgia P.T., Holtz G., Remaut E., and Fiers W. Codon usage and mistranslation. In vivo basal level misreading of the MS2 coat protein message. J. Biol. Chem. 258 (1983) 10007-10012
    • (1983) J. Biol. Chem. , vol.258 , pp. 10007-10012
    • Parker, J.1    Johnston, T.C.2    Borgia, P.T.3    Holtz, G.4    Remaut, E.5    Fiers, W.6
  • 63
    • 0035282838 scopus 로고    scopus 로고
    • Restricted wobble rules for eukaryotic genomes
    • Percudani R. Restricted wobble rules for eukaryotic genomes. Trends Genet. 17 (2001) 133-135
    • (2001) Trends Genet. , vol.17 , pp. 133-135
    • Percudani, R.1
  • 64
    • 0032736056 scopus 로고    scopus 로고
    • Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae
    • Percudani R., and Ottonello S. Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae. Mol. Biol. Evol. 16 (1999) 1752-1762
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1752-1762
    • Percudani, R.1    Ottonello, S.2
  • 67
    • 0020337390 scopus 로고
    • Is there proofreading during polypeptide synthesis?
    • Ruusala T., Ehrenberg M., and Kurland C.G. Is there proofreading during polypeptide synthesis?. EMBO J. 1 (1982) 741-745
    • (1982) EMBO J. , vol.1 , pp. 741-745
    • Ruusala, T.1    Ehrenberg, M.2    Kurland, C.G.3
  • 70
    • 0034083601 scopus 로고    scopus 로고
    • Effects of anticodon 2′-O-methylations on tRNA codon recognition in an Escherichia coli cell-free translation
    • Satoh A., Takai K., Ouchi R., Yokoyama S., and Takaku H. Effects of anticodon 2′-O-methylations on tRNA codon recognition in an Escherichia coli cell-free translation. RNA 6 (2000) 680-686
    • (2000) RNA , vol.6 , pp. 680-686
    • Satoh, A.1    Takai, K.2    Ouchi, R.3    Yokoyama, S.4    Takaku, H.5
  • 71
    • 0014682218 scopus 로고
    • Specificity of yeast glutamic acid transfer RNA for codon recognition
    • Sekiya T., Takeishi K., and Ukita T. Specificity of yeast glutamic acid transfer RNA for codon recognition. Biochim. Biophys. Acta 182 (1969) 411-426
    • (1969) Biochim. Biophys. Acta , vol.182 , pp. 411-426
    • Sekiya, T.1    Takeishi, K.2    Ukita, T.3
  • 72
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp P.M., and Li W.-H. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15 (1987) 1281-1295
    • (1987) Nucl. Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2
  • 73
    • 0022621046 scopus 로고
    • Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs
    • Sibler A.-P., Dirheimer G., and Martin R.P. Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs. FEBS Lett. 194 (1986) 131-138
    • (1986) FEBS Lett. , vol.194 , pp. 131-138
    • Sibler, A.-P.1    Dirheimer, G.2    Martin, R.P.3
  • 76
    • 0018082458 scopus 로고
    • 4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA
    • 4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA. J. Biol. Chem. 253 (1978) 6132-6139
    • (1978) J. Biol. Chem. , vol.253 , pp. 6132-6139
    • Stern, L.1    Schulman, L.H.2
  • 78
    • 0345531141 scopus 로고    scopus 로고
    • Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons
    • Takai K., and Yokoyama S. Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons. Nucl. Acids Res. 31 (2003) 6383-6391
    • (2003) Nucl. Acids Res. , vol.31 , pp. 6383-6391
    • Takai, K.1    Yokoyama, S.2
  • 80
    • 0032973714 scopus 로고    scopus 로고
    • A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system
    • Takai K., Okumura S., Hosono K., Yokoyama S., and Takaku H. A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system. FEBS Lett. 447 (1999) 1-4
    • (1999) FEBS Lett. , vol.447 , pp. 1-4
    • Takai, K.1    Okumura, S.2    Hosono, K.3    Yokoyama, S.4    Takaku, H.5
  • 83
    • 0004955452 scopus 로고
    • Proofreading of the codon-anticodon interaction on ribosome
    • Thompson R.C., and Stone P.J. Proofreading of the codon-anticodon interaction on ribosome. Proc. Natl Acad. Sci. USA 74 (1977) 198-202
    • (1977) Proc. Natl Acad. Sci. USA , vol.74 , pp. 198-202
    • Thompson, R.C.1    Stone, P.J.2
  • 85
    • 0032581682 scopus 로고    scopus 로고
    • SerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria
    • SerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria. Biochim. Biophys. Acta 1399 (1998) 78-82
    • (1998) Biochim. Biophys. Acta , vol.1399 , pp. 78-82
    • Tomita, K.1    Ueda, T.2    Watanabe, K.3
  • 86
    • 0033230183 scopus 로고    scopus 로고
    • Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria
    • Tomita K., Ueda T., Ishiwa S., Crain P.F., McCloskey J.A., and Watanabe K. Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria. Nucl. Acids Res. 27 (1999) 4291-4297
    • (1999) Nucl. Acids Res. , vol.27 , pp. 4291-4297
    • Tomita, K.1    Ueda, T.2    Ishiwa, S.3    Crain, P.F.4    McCloskey, J.A.5    Watanabe, K.6
  • 88
    • 0344187126 scopus 로고
    • Anticodon loop substitution in tRNA
    • Clark B.F.C., and Petersen H.U. (Eds), Munksgaard, Copenhagen
    • Uhlenbeck O., Bare L., and Bruce A.G. Anticodon loop substitution in tRNA. In: Clark B.F.C., and Petersen H.U. (Eds). Gene Expression, Alfred Benzon Symposium 19 (1984), Munksgaard, Copenhagen 163-177
    • (1984) Gene Expression, Alfred Benzon Symposium 19 , pp. 163-177
    • Uhlenbeck, O.1    Bare, L.2    Bruce, A.G.3
  • 89
    • 0029661924 scopus 로고    scopus 로고
    • Trp occurs in diverse virus RNAs due to a limited influence of the codon context
    • Trp occurs in diverse virus RNAs due to a limited influence of the codon context. Nucl. Acids Res. 24 (1996) 3424-3430
    • (1996) Nucl. Acids Res. , vol.24 , pp. 3424-3430
    • Urban, C.1    Zerfaß, K.2    Fingerhut, C.3    Beier, H.4
  • 91
    • 0021770891 scopus 로고
    • Identification and synthesis of a naturally occurring selenonucleoside in bacterial tRNAs: 5-[(methylamino)methyl]-2-selenouridine
    • Wittwer A.J., Tsai L., Ching W.M., and Stadtman T.C. Identification and synthesis of a naturally occurring selenonucleoside in bacterial tRNAs: 5-[(methylamino)methyl]-2-selenouridine. Biochemistry 23 (1984) 4650-4655
    • (1984) Biochemistry , vol.23 , pp. 4650-4655
    • Wittwer, A.J.1    Tsai, L.2    Ching, W.M.3    Stadtman, T.C.4
  • 92
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
    • Xia T., SantaLucia J., Burkard M.E., Kierzek R., Schroeder S.J., Jiao X., Cox C., and Turner D.H. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37 (1998) 14719-14735
    • (1998) Biochemistry , vol.37 , pp. 14719-14735
    • Xia, T.1    SantaLucia, J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8
  • 95
    • 0019913580 scopus 로고
    • Translational efficiency of transfer RNA's: uses of an extended anticodon
    • Yarus M. Translational efficiency of transfer RNA's: uses of an extended anticodon. Science 218 (1982) 646-652
    • (1982) Science , vol.218 , pp. 646-652
    • Yarus, M.1
  • 96
    • 0023027061 scopus 로고
    • The translational efficiency of tRNA is a property of the anticodon arm
    • Yarus M., Cline S., Raftery L., Wier P., and Bradley D. The translational efficiency of tRNA is a property of the anticodon arm. J. Biol. Chem. 261 (1986) 10496-10505
    • (1986) J. Biol. Chem. , vol.261 , pp. 10496-10505
    • Yarus, M.1    Cline, S.2    Raftery, L.3    Wier, P.4    Bradley, D.5
  • 97
    • 0035801225 scopus 로고    scopus 로고
    • Wobble modification defect in tRNA desturbs codon-anticodon interaction in a mitochondrial disease
    • Yasukawa T., Suzuki T., Ishii N., Ohta S., and Watanabe K. Wobble modification defect in tRNA desturbs codon-anticodon interaction in a mitochondrial disease. EMBO J. 20 (2001) 4794-4802
    • (2001) EMBO J. , vol.20 , pp. 4794-4802
    • Yasukawa, T.1    Suzuki, T.2    Ishii, N.3    Ohta, S.4    Watanabe, K.5
  • 98
    • 0002365884 scopus 로고
    • Modified nucleosides and codon recognition
    • Soll D., and RajBhandary U. (Eds), ASM Press, Washington, DC, USA
    • Yokoyama S., and Nishimura S. Modified nucleosides and codon recognition. In: Soll D., and RajBhandary U. (Eds). tRNA: Structure, Biosynthesis, and Function (1995), ASM Press, Washington, DC, USA 207-223
    • (1995) tRNA: Structure, Biosynthesis, and Function , pp. 207-223
    • Yokoyama, S.1    Nishimura, S.2
  • 100
    • 0026723118 scopus 로고
    • Trp with CmCA anticodon
    • Trp with CmCA anticodon. EMBO J. 11 (1992) 4167-4173
    • (1992) EMBO J. , vol.11 , pp. 4167-4173
    • Zerfaß, K.1    Beier, H.2


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