-
1
-
-
0026343194
-
Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified wobble hypothesis
-
Agris P.F. Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified wobble hypothesis. Biochimie 73 (1991) 1345-1349
-
(1991)
Biochimie
, vol.73
, pp. 1345-1349
-
-
Agris, P.F.1
-
2
-
-
1242309517
-
Decoding the genome: a modified view
-
Agris P.F. Decoding the genome: a modified view. Nucl. Acids Res. 32 (2004) 223-238
-
(2004)
Nucl. Acids Res.
, vol.32
, pp. 223-238
-
-
Agris, P.F.1
-
3
-
-
0024415902
-
Codon recognition pattern as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum
-
Andachi Y., Yamao F., Muto A., and Osawa S. Codon recognition pattern as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. J. Mol. Biol. 209 (1989) 37-54
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 37-54
-
-
Andachi, Y.1
Yamao, F.2
Muto, A.3
Osawa, S.4
-
4
-
-
3242873919
-
Different pattern of codon recognition by mammalian mitochondrial tRNAs
-
Barrell B.G., Anderson S., Bankier A.T., de Bruijn M.H., Coulson A.R., Drouin J., Eperon I.C., Nierlich D.P., Roe B.A., Sanger F., Schreier P.H., Smith A.J., Staden R., and Young I.G. Different pattern of codon recognition by mammalian mitochondrial tRNAs. Proc. Natl Acad. Sci. USA 77 (1980) 3164-3166
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 3164-3166
-
-
Barrell, B.G.1
Anderson, S.2
Bankier, A.T.3
de Bruijn, M.H.4
Coulson, A.R.5
Drouin, J.6
Eperon, I.C.7
Nierlich, D.P.8
Roe, B.A.9
Sanger, F.10
Schreier, P.H.11
Smith, A.J.12
Staden, R.13
Young, I.G.14
-
5
-
-
0001668782
-
The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts
-
Beier H., Barciszewska M., and Sickinger H.-D. The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts. EMBO J. 3 (1984) 1091-1096
-
(1984)
EMBO J.
, vol.3
, pp. 1091-1096
-
-
Beier, H.1
Barciszewska, M.2
Sickinger, H.-D.3
-
6
-
-
3242848215
-
Codon recognition rules in yeast mitochondria
-
Bonitz S.G., Berlani R., Coruzzi G., Li M., Macino G., Nobrega F.G., Nobrega M.P., Thalenfeld B.E., and Tzagoloff A. Codon recognition rules in yeast mitochondria. Proc. Natl Acad. Sci. USA 77 (1980) 3167-3170
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 3167-3170
-
-
Bonitz, S.G.1
Berlani, R.2
Coruzzi, G.3
Li, M.4
Macino, G.5
Nobrega, F.G.6
Nobrega, M.P.7
Thalenfeld, B.E.8
Tzagoloff, A.9
-
7
-
-
0036295962
-
-
Chen, P., Qian, Q., Zhang, S., Isaksson, L. A., Björk, G. R., 2002. A cytosolic tRNA with an unmodified adenosine in the wobble position reads a codon ending with the non-complementary nucleoside cytidine. J. Mol. Biol. 317, 481-492.
-
-
-
-
8
-
-
0022606026
-
Glu from Clostridium sticklandii
-
Glu from Clostridium sticklandii. Arch. Biochem. Biophys. 244 (1986) 137-146
-
(1986)
Arch. Biochem. Biophys.
, vol.244
, pp. 137-146
-
-
Ching, W.M.1
-
9
-
-
0028957081
-
Glycine codon discrimination and the nucleotide in position 32 of the anticodon loop
-
Claesson C., Lustig F., Boren T., Simonsson C., Barciszewska M., and Lagerkvist U. Glycine codon discrimination and the nucleotide in position 32 of the anticodon loop. J. Mol. Biol. 247 (1995) 191-196
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 191-196
-
-
Claesson, C.1
Lustig, F.2
Boren, T.3
Simonsson, C.4
Barciszewska, M.5
Lagerkvist, U.6
-
10
-
-
18844408328
-
An active role for tRNA in decoding beyond codon:anticodon pairing
-
Cochella L., and Green R. An active role for tRNA in decoding beyond codon:anticodon pairing. Science 308 (2005) 1178-1180
-
(2005)
Science
, vol.308
, pp. 1178-1180
-
-
Cochella, L.1
Green, R.2
-
11
-
-
0013936167
-
Codon-anticodon pairing: the wobble hypothesis
-
Crick F.H.C. Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19 (1966) 548-555
-
(1966)
J. Mol. Biol.
, vol.19
, pp. 548-555
-
-
Crick, F.H.C.1
-
12
-
-
0028899217
-
Decoding with the A:I wobble pair is inefficient
-
Curran J.F. Decoding with the A:I wobble pair is inefficient. Nucl. Acids Res. 23 (1995) 683-688
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 683-688
-
-
Curran, J.F.1
-
13
-
-
0002090634
-
Modified nucleosides in translation
-
Grosjean H., and Benne R. (Eds), ASM Press, Washington, DC, USA
-
Curran J.F. Modified nucleosides in translation. In: Grosjean H., and Benne R. (Eds). Modification and Editing of RNA (1998), ASM Press, Washington, DC, USA 493-516
-
(1998)
Modification and Editing of RNA
, pp. 493-516
-
-
Curran, J.F.1
-
14
-
-
0036952706
-
An unexpected absence of queuosine modification in the tRNAs of an Escherichia coli B strain
-
Dineshkumar T.K., Thanedar S., Subbulakshmi C., and Varshney U. An unexpected absence of queuosine modification in the tRNAs of an Escherichia coli B strain. Microbiology 148 (2002) 3779-3787
-
(2002)
Microbiology
, vol.148
, pp. 3779-3787
-
-
Dineshkumar, T.K.1
Thanedar, S.2
Subbulakshmi, C.3
Varshney, U.4
-
15
-
-
0030564828
-
Co-variation of tRNA abundance and codon usage in Eschericha coli at different growth rates
-
Dong H., Nilsson L., and Kurland C.G. Co-variation of tRNA abundance and codon usage in Eschericha coli at different growth rates. J. Mol. Biol. 260 (1996) 649-663
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 649-663
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.G.3
-
16
-
-
0014694171
-
On N-H...S hydrogen bonds
-
Donohue J. On N-H...S hydrogen bonds. J. Mol. Biol. 45 (1969) 231-235
-
(1969)
J. Mol. Biol.
, vol.45
, pp. 231-235
-
-
Donohue, J.1
-
18
-
-
0842267211
-
Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
-
Gromadski K.B., and Rodnina M.V. Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Mol. Cell 13 (2004) 191-200
-
(2004)
Mol. Cell
, vol.13
, pp. 191-200
-
-
Gromadski, K.B.1
Rodnina, M.V.2
-
19
-
-
0032553438
-
Lys with hypermodified derivatives of 5-methylaminomethyl-2thiouridine in the wobble position
-
Lys with hypermodified derivatives of 5-methylaminomethyl-2thiouridine in the wobble position. J. Mol. Biol. 284 (1998) 33-42
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 33-42
-
-
Hagervall, T.G.1
Pomerantz, S.C.2
McCloskey, J.A.3
-
20
-
-
0015514384
-
Asp from Escherichia coli B. Universal presence of nucleoside Q in the first position of the anticodon of three transfer ribonucleic acids
-
Asp from Escherichia coli B. Universal presence of nucleoside Q in the first position of the anticodon of three transfer ribonucleic acids. Biochemistry 11 (1972) 301-308
-
(1972)
Biochemistry
, vol.11
, pp. 301-308
-
-
Harada, F.1
Nishimura, S.2
-
21
-
-
0040456003
-
Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs
-
Heckman J.E., Sarnoff J., Alzner-DeWeerd B., Yin S., and RajBhandary U.L. Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs. Proc. Natl Acad. Sci. USA 77 (1980) 3159-3163
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 3159-3163
-
-
Heckman, J.E.1
Sarnoff, J.2
Alzner-DeWeerd, B.3
Yin, S.4
RajBhandary, U.L.5
-
22
-
-
0015223081
-
Tryptophan transfer RNA as the UGA suppressor
-
Hirsh D. Tryptophan transfer RNA as the UGA suppressor. J. Mol. Biol. 58 (1971) 439-444
-
(1971)
J. Mol. Biol.
, vol.58
, pp. 439-444
-
-
Hirsh, D.1
-
23
-
-
0000359208
-
Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Hopfield J.J. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA 71 (1974) 4135-4139
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4135-4139
-
-
Hopfield, J.J.1
-
24
-
-
0033524395
-
Leu from Escherichia coli
-
Leu from Escherichia coli. Biochemistry 38 (1999) 207-217
-
(1999)
Biochemistry
, vol.38
, pp. 207-217
-
-
Horie, N.1
Yamaizumi, Z.2
Kuchino, Y.3
Takai, K.4
Goldman, E.5
Miyazawa, T.6
Nishimura, S.7
Yokoyama, S.8
-
25
-
-
0019474499
-
Correlation between the abundance of Eschericha coli transfer RNAs and the occurrence of the respective codons in its protein genes
-
Ikemura T. Correlation between the abundance of Eschericha coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 146 (1981) 1-21
-
(1981)
J. Mol. Biol.
, vol.146
, pp. 1-21
-
-
Ikemura, T.1
-
26
-
-
22544480568
-
Molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition
-
Ikeuchi Y., Soma A., Ote T., Kato J., Sekine Y., and Suzuki T. Molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition. Mol. Cell 19 (2005) 235-246
-
(2005)
Mol. Cell
, vol.19
, pp. 235-246
-
-
Ikeuchi, Y.1
Soma, A.2
Ote, T.3
Kato, J.4
Sekine, Y.5
Suzuki, T.6
-
27
-
-
0029123275
-
Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position
-
Inagaki Y., Kojima A., Bessho Y., Hori H., Ohama T., and Osawa S. Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position. J. Mol. Biol. 251 (1995) 486-492
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 486-492
-
-
Inagaki, Y.1
Kojima, A.2
Bessho, Y.3
Hori, H.4
Ohama, T.5
Osawa, S.6
-
28
-
-
0021165579
-
Codon specificity of starvation induced misreading
-
Johnston T.C., Borgia P.T., and Parker J. Codon specificity of starvation induced misreading. Mol. Gen. Genet. 195 (1984) 459-465
-
(1984)
Mol. Gen. Genet.
, vol.195
, pp. 459-465
-
-
Johnston, T.C.1
Borgia, P.T.2
Parker, J.3
-
29
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
Kanaya S., Yamada Y., Kudo Y., and Ikemura T. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238 (1999) 143-155
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
30
-
-
0037415690
-
Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism
-
Kaneko T., Suzuki T., Kapushoc S.T., Rubio M.A., Ghazvini J., Watanabe K., Simpson L., and Suzuki T. Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism. EMBO J. 22 (2003) 657-667
-
(2003)
EMBO J.
, vol.22
, pp. 657-667
-
-
Kaneko, T.1
Suzuki, T.2
Kapushoc, S.T.3
Rubio, M.A.4
Ghazvini, J.5
Watanabe, K.6
Simpson, L.7
Suzuki, T.8
-
31
-
-
0025141883
-
The difference in the typw of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate
-
Kato M., Nishikawa K., Uritani M., Miyazaki M., and Takemura S. The difference in the typw of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate. J. Biochem. 107 (1990) 242-247
-
(1990)
J. Biochem.
, vol.107
, pp. 242-247
-
-
Kato, M.1
Nishikawa, K.2
Uritani, M.3
Miyazaki, M.4
Takemura, S.5
-
33
-
-
0028358136
-
Met
-
Met. Nucleosides Nucleotides 13 (1994) 1189-1199
-
(1994)
Nucleosides Nucleotides
, vol.13
, pp. 1189-1199
-
-
Kawai, G.1
Yokogawa, T.2
Nishikawa, K.3
Ueda, T.4
Hashizume, T.5
McCloskey, J.A.6
Yokoyama, S.7
Watanabe, K.8
-
34
-
-
6344221310
-
Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease
-
Kirino Y., Yasukawa T., Ohta S., Akira S., Ishihara K., Watanabe K., and Suzuki T. Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease. Proc. Natl Acad. Sci. USA 101 (2004) 15070-15075
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 15070-15075
-
-
Kirino, Y.1
Yasukawa, T.2
Ohta, S.3
Akira, S.4
Ishihara, K.5
Watanabe, K.6
Suzuki, T.7
-
35
-
-
0345345078
-
"Two out of three": an alternative method for codon reading
-
Lagerkvist U. "Two out of three": an alternative method for codon reading. Proc. Natl Acad. Sci. USA 75 (1978) 1759-1762
-
(1978)
Proc. Natl Acad. Sci. USA
, vol.75
, pp. 1759-1762
-
-
Lagerkvist, U.1
-
36
-
-
0019412323
-
Unorthodox codon reading and the evolution of the genetic code
-
Lagerkvist U. Unorthodox codon reading and the evolution of the genetic code. Cell 23 (1981) 305-306
-
(1981)
Cell
, vol.23
, pp. 305-306
-
-
Lagerkvist, U.1
-
37
-
-
0031571595
-
Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner
-
Li J., Esverg B., Curran J.F., and Björk G. Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner. J. Mol. Biol. 271 (1997) 209-221
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 209-221
-
-
Li, J.1
Esverg, B.2
Curran, J.F.3
Björk, G.4
-
38
-
-
0028069147
-
Analysis of action of wobble nucleoside modifications on codon-anticodon pairing within the ribosome
-
Lim V.I. Analysis of action of wobble nucleoside modifications on codon-anticodon pairing within the ribosome. J. Mol. Biol. 240 (1994) 8-19
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 8-19
-
-
Lim, V.I.1
-
39
-
-
0029084597
-
Analysis of action of the wobble adenine on codon reading within the ribosome
-
Lim V.I. Analysis of action of the wobble adenine on codon reading within the ribosome. J. Mol. Biol. 252 (1995) 277-282
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 277-282
-
-
Lim, V.I.1
-
40
-
-
0034961959
-
Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure
-
Lim V.I., and Curran J.F. Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure. RNA 7 (2001) 942-957
-
(2001)
RNA
, vol.7
, pp. 942-957
-
-
Lim, V.I.1
Curran, J.F.2
-
41
-
-
0026495563
-
Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites
-
Lim V.I., and Venclovas C. Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites. FEBS Lett. 313 (1992) 133-137
-
(1992)
FEBS Lett.
, vol.313
, pp. 133-137
-
-
Lim, V.I.1
Venclovas, C.2
-
42
-
-
0027530123
-
The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons
-
Lustig F., Boren T., Claesson C., Simonsson C., Barciszewska M., and Lagerkvist U. The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons. Proc. Natl Acad. Sci. USA 90 (1993) 3343-3347
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 3343-3347
-
-
Lustig, F.1
Boren, T.2
Claesson, C.3
Simonsson, C.4
Barciszewska, M.5
Lagerkvist, U.6
-
43
-
-
0036792830
-
tRNomics: analysis of tRNA genes from 50 genomes of eukarya, archaea, and bacteria reveals anticodon-sparing strategies and domain-specific features
-
Marck C., and Grosjean H. tRNomics: analysis of tRNA genes from 50 genomes of eukarya, archaea, and bacteria reveals anticodon-sparing strategies and domain-specific features. RNA 8 (2002) 1189-1232
-
(2002)
RNA
, vol.8
, pp. 1189-1232
-
-
Marck, C.1
Grosjean, H.2
-
44
-
-
0032488826
-
A novel wobble rule found in starfish mitochondria. Presence of 7-methylguanosine at the anticodon wobble position expands decoding capability of tRNA
-
Matsuyama S., Ueda T., Crain P.F., McCloskey J.A., and Watanabe K. A novel wobble rule found in starfish mitochondria. Presence of 7-methylguanosine at the anticodon wobble position expands decoding capability of tRNA. J. Biol. Chem. 273 (1998) 3363-3368
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 3363-3368
-
-
Matsuyama, S.1
Ueda, T.2
Crain, P.F.3
McCloskey, J.A.4
Watanabe, K.5
-
45
-
-
0018086876
-
Stacking of Crick wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction
-
Mizuno H., and Sundaralingam M. Stacking of Crick wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon wobble interaction. Nucl. Acids Res. 5 (1978) 4451-4461
-
(1978)
Nucl. Acids Res.
, vol.5
, pp. 4451-4461
-
-
Mizuno, H.1
Sundaralingam, M.2
-
46
-
-
0028226958
-
A novel modified nucleoside found at the first position of the anticodon of methionine tRNA from bovine liver mitochondria
-
Moriya J., Yokogawa T., Wakita K., Ueda T., Nishikawa K., Crain P.F., Hashizume T., Pomerantz S.C., McCloskey J.A., Kawai G., Hayashi N., Yokoyama S., and Watanabe K. A novel modified nucleoside found at the first position of the anticodon of methionine tRNA from bovine liver mitochondria. Biochemistry 33 (1994) 2234-2239
-
(1994)
Biochemistry
, vol.33
, pp. 2234-2239
-
-
Moriya, J.1
Yokogawa, T.2
Wakita, K.3
Ueda, T.4
Nishikawa, K.5
Crain, P.F.6
Hashizume, T.7
Pomerantz, S.C.8
McCloskey, J.A.9
Kawai, G.10
Hayashi, N.11
Yokoyama, S.12
Watanabe, K.13
-
47
-
-
0019783836
-
In vivo decoding rules in Schizosaccharomyces pombe are at variance with in vitro data
-
Munz P., Leupold U., Agris P., and Kohli J. In vivo decoding rules in Schizosaccharomyces pombe are at variance with in vitro data. Nature 294 (1981) 187-188
-
(1981)
Nature
, vol.294
, pp. 187-188
-
-
Munz, P.1
Leupold, U.2
Agris, P.3
Kohli, J.4
-
48
-
-
0023942379
-
A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli
-
Muramatsu T., Yokoyama S., Horie N., Matsuda A., Ueda T., Yamaizumi Z., Kuchino Y., Nishimura S., and Miyazawa T. A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli. J. Biol. Chem. 263 (1988) 9261-9267
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 9261-9267
-
-
Muramatsu, T.1
Yokoyama, S.2
Horie, N.3
Matsuda, A.4
Ueda, T.5
Yamaizumi, Z.6
Kuchino, Y.7
Nishimura, S.8
Miyazawa, T.9
-
49
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu T., Nishikawa K., Nemoto F., Kuchino Y., Nishimura S., Miyazawa T., and Yokoyama S. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336 (1988) 179-181
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
50
-
-
0014955806
-
Uridin-5-oxy acetic acid: a new minor constituent from E. coli valine transfer RNA I
-
Murao K., Saneyoshi M., Harada F., and Nishimura S. Uridin-5-oxy acetic acid: a new minor constituent from E. coli valine transfer RNA I. Biochem. Biophys. Res. Commun. 38 (1970) 657-662
-
(1970)
Biochem. Biophys. Res. Commun.
, vol.38
, pp. 657-662
-
-
Murao, K.1
Saneyoshi, M.2
Harada, F.3
Nishimura, S.4
-
53
-
-
0342614926
-
Codon usage tabulated from international DNA sequence databases: status for the year 2000
-
Nakamura Y., Gojobori T., and Ikemura T. Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucl. Acids Res. 28 (2000) 292
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 292
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
54
-
-
4644266760
-
UGG promotes reading of all four proline codons in vivo
-
UGG promotes reading of all four proline codons in vivo. RNA 10 (2004) 1662-1673
-
(2004)
RNA
, vol.10
, pp. 1662-1673
-
-
Näsvall, S.J.1
Chen, P.2
Björk, G.R.3
-
55
-
-
0020653505
-
Structure, biosynthesis, and function of queuosine in transfer RNA
-
Nishimura S. Structure, biosynthesis, and function of queuosine in transfer RNA. Prog. Nucl. Acid Res. Mol. Biol. 28 (1983) 49-73
-
(1983)
Prog. Nucl. Acid Res. Mol. Biol.
, vol.28
, pp. 49-73
-
-
Nishimura, S.1
-
56
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
Ogle J.M., Brodersen D.E., Clemons Jr. W.M., Tarry M.J., Carter A.P., and Ramakrishnan V. Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292 (2001) 897-902
-
(2001)
Science
, vol.292
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
57
-
-
0037184536
-
Selection of tRNA by the ribosome requires a transition from an open to closed form
-
Ogle J.M., Murphy F.V., Tarry M.J., and Ramakrishnan V. Selection of tRNA by the ribosome requires a transition from an open to closed form. Cell 111 (2002) 721-732
-
(2002)
Cell
, vol.111
, pp. 721-732
-
-
Ogle, J.M.1
Murphy, F.V.2
Tarry, M.J.3
Ramakrishnan, V.4
-
58
-
-
0029988415
-
5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver
-
5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver. Nucl. Acids Res. 24 (1996) 1489-1496
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 1489-1496
-
-
Pais de Barros, J.P.1
Keith, G.2
El Adlouni, C.3
Glasser, A.L.4
Mack, G.5
Dirheimer, G.6
Desgres, J.7
-
59
-
-
0032535207
-
Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome
-
Pape T., Wintermeyer W., and Rodnina M.V. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J. 17 (1998) 7490-7497
-
(1998)
EMBO J.
, vol.17
, pp. 7490-7497
-
-
Pape, T.1
Wintermeyer, W.2
Rodnina, M.V.3
-
60
-
-
0033168212
-
Induced fit in the initial selection and proofreading of aminoacyl-tRNA on the ribosome
-
Pape T., Wintermeyer W., and Rodnina M.V. Induced fit in the initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J. 18 (1999) 3800-3807
-
(1999)
EMBO J.
, vol.18
, pp. 3800-3807
-
-
Pape, T.1
Wintermeyer, W.2
Rodnina, M.V.3
-
61
-
-
0021112509
-
Codon usage and mistranslation. In vivo basal level misreading of the MS2 coat protein message
-
Parker J., Johnston T.C., Borgia P.T., Holtz G., Remaut E., and Fiers W. Codon usage and mistranslation. In vivo basal level misreading of the MS2 coat protein message. J. Biol. Chem. 258 (1983) 10007-10012
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 10007-10012
-
-
Parker, J.1
Johnston, T.C.2
Borgia, P.T.3
Holtz, G.4
Remaut, E.5
Fiers, W.6
-
62
-
-
0017902947
-
4-acetylcytidine, a modified nucleoside of tRNA, and stereochemistry of codon-anticodon interaction
-
4-acetylcytidine, a modified nucleoside of tRNA, and stereochemistry of codon-anticodon interaction. Biochem. Biophys. Res. Commun. 83 (1978) 657-663
-
(1978)
Biochem. Biophys. Res. Commun.
, vol.83
, pp. 657-663
-
-
Parthasarathy, R.1
Ginell, S.L.2
De, N.C.3
Chheda, G.B.4
-
63
-
-
0035282838
-
Restricted wobble rules for eukaryotic genomes
-
Percudani R. Restricted wobble rules for eukaryotic genomes. Trends Genet. 17 (2001) 133-135
-
(2001)
Trends Genet.
, vol.17
, pp. 133-135
-
-
Percudani, R.1
-
64
-
-
0032736056
-
Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae
-
Percudani R., and Ottonello S. Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae. Mol. Biol. Evol. 16 (1999) 1752-1762
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1752-1762
-
-
Percudani, R.1
Ottonello, S.2
-
67
-
-
0020337390
-
Is there proofreading during polypeptide synthesis?
-
Ruusala T., Ehrenberg M., and Kurland C.G. Is there proofreading during polypeptide synthesis?. EMBO J. 1 (1982) 741-745
-
(1982)
EMBO J.
, vol.1
, pp. 741-745
-
-
Ruusala, T.1
Ehrenberg, M.2
Kurland, C.G.3
-
70
-
-
0034083601
-
Effects of anticodon 2′-O-methylations on tRNA codon recognition in an Escherichia coli cell-free translation
-
Satoh A., Takai K., Ouchi R., Yokoyama S., and Takaku H. Effects of anticodon 2′-O-methylations on tRNA codon recognition in an Escherichia coli cell-free translation. RNA 6 (2000) 680-686
-
(2000)
RNA
, vol.6
, pp. 680-686
-
-
Satoh, A.1
Takai, K.2
Ouchi, R.3
Yokoyama, S.4
Takaku, H.5
-
71
-
-
0014682218
-
Specificity of yeast glutamic acid transfer RNA for codon recognition
-
Sekiya T., Takeishi K., and Ukita T. Specificity of yeast glutamic acid transfer RNA for codon recognition. Biochim. Biophys. Acta 182 (1969) 411-426
-
(1969)
Biochim. Biophys. Acta
, vol.182
, pp. 411-426
-
-
Sekiya, T.1
Takeishi, K.2
Ukita, T.3
-
72
-
-
0023650543
-
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp P.M., and Li W.-H. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15 (1987) 1281-1295
-
(1987)
Nucl. Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.-H.2
-
73
-
-
0022621046
-
Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs
-
Sibler A.-P., Dirheimer G., and Martin R.P. Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs. FEBS Lett. 194 (1986) 131-138
-
(1986)
FEBS Lett.
, vol.194
, pp. 131-138
-
-
Sibler, A.-P.1
Dirheimer, G.2
Martin, R.P.3
-
74
-
-
10744229752
-
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA
-
Soma A., Ikeuchi Y., Kanemasa S., Kobayashi K., Ogasawara N., Ote T., Kato J., Watanabe K., Sekine Y., and Suzuki T. An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol. Cell 12 (2003) 689-698
-
(2003)
Mol. Cell
, vol.12
, pp. 689-698
-
-
Soma, A.1
Ikeuchi, Y.2
Kanemasa, S.3
Kobayashi, K.4
Ogasawara, N.5
Ote, T.6
Kato, J.7
Watanabe, K.8
Sekine, Y.9
Suzuki, T.10
-
75
-
-
0031804156
-
Compiliation of tRNA sequences and sequences of tRNA genes
-
Sprinzl M., Horn C., Brown M., Ioudovitch A., and Steinberg S. Compiliation of tRNA sequences and sequences of tRNA genes. Nucl. Acids Res. 26 (1998) 148-153
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
76
-
-
0018082458
-
4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA
-
4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA. J. Biol. Chem. 253 (1978) 6132-6139
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 6132-6139
-
-
Stern, L.1
Schulman, L.H.2
-
78
-
-
0345531141
-
Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons
-
Takai K., and Yokoyama S. Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons. Nucl. Acids Res. 31 (2003) 6383-6391
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 6383-6391
-
-
Takai, K.1
Yokoyama, S.2
-
80
-
-
0032973714
-
A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system
-
Takai K., Okumura S., Hosono K., Yokoyama S., and Takaku H. A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system. FEBS Lett. 447 (1999) 1-4
-
(1999)
FEBS Lett.
, vol.447
, pp. 1-4
-
-
Takai, K.1
Okumura, S.2
Hosono, K.3
Yokoyama, S.4
Takaku, H.5
-
82
-
-
0028927293
-
Met to decode AUG and AUA codons
-
Met to decode AUG and AUA codons. Biochimie 77 (1995) 104-108
-
(1995)
Biochimie
, vol.77
, pp. 104-108
-
-
Takemoto, C.1
Koike, T.2
Yokogawa, T.3
Benkowski, L.4
Spremulli, L.L.5
Ueda, T.6
Nishikawa, K.7
Watanabe, K.8
-
83
-
-
0004955452
-
Proofreading of the codon-anticodon interaction on ribosome
-
Thompson R.C., and Stone P.J. Proofreading of the codon-anticodon interaction on ribosome. Proc. Natl Acad. Sci. USA 74 (1977) 198-202
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 198-202
-
-
Thompson, R.C.1
Stone, P.J.2
-
84
-
-
0005822936
-
Improved estimation of secondary structure in ribonucleic acids
-
Tinoco Jr. I., Borer P.N., Dengler B., Levine M.D., Uhlenbeck O., Crothers D.M., and Gralla J. Improved estimation of secondary structure in ribonucleic acids. Nat. New Biol. 246 (1973) 40-41
-
(1973)
Nat. New Biol.
, vol.246
, pp. 40-41
-
-
Tinoco Jr., I.1
Borer, P.N.2
Dengler, B.3
Levine, M.D.4
Uhlenbeck, O.5
Crothers, D.M.6
Gralla, J.7
-
85
-
-
0032581682
-
SerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria
-
SerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria. Biochim. Biophys. Acta 1399 (1998) 78-82
-
(1998)
Biochim. Biophys. Acta
, vol.1399
, pp. 78-82
-
-
Tomita, K.1
Ueda, T.2
Watanabe, K.3
-
86
-
-
0033230183
-
Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria
-
Tomita K., Ueda T., Ishiwa S., Crain P.F., McCloskey J.A., and Watanabe K. Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria. Nucl. Acids Res. 27 (1999) 4291-4297
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 4291-4297
-
-
Tomita, K.1
Ueda, T.2
Ishiwa, S.3
Crain, P.F.4
McCloskey, J.A.5
Watanabe, K.6
-
88
-
-
0344187126
-
Anticodon loop substitution in tRNA
-
Clark B.F.C., and Petersen H.U. (Eds), Munksgaard, Copenhagen
-
Uhlenbeck O., Bare L., and Bruce A.G. Anticodon loop substitution in tRNA. In: Clark B.F.C., and Petersen H.U. (Eds). Gene Expression, Alfred Benzon Symposium 19 (1984), Munksgaard, Copenhagen 163-177
-
(1984)
Gene Expression, Alfred Benzon Symposium 19
, pp. 163-177
-
-
Uhlenbeck, O.1
Bare, L.2
Bruce, A.G.3
-
89
-
-
0029661924
-
Trp occurs in diverse virus RNAs due to a limited influence of the codon context
-
Trp occurs in diverse virus RNAs due to a limited influence of the codon context. Nucl. Acids Res. 24 (1996) 3424-3430
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 3424-3430
-
-
Urban, C.1
Zerfaß, K.2
Fingerhut, C.3
Beier, H.4
-
91
-
-
0021770891
-
Identification and synthesis of a naturally occurring selenonucleoside in bacterial tRNAs: 5-[(methylamino)methyl]-2-selenouridine
-
Wittwer A.J., Tsai L., Ching W.M., and Stadtman T.C. Identification and synthesis of a naturally occurring selenonucleoside in bacterial tRNAs: 5-[(methylamino)methyl]-2-selenouridine. Biochemistry 23 (1984) 4650-4655
-
(1984)
Biochemistry
, vol.23
, pp. 4650-4655
-
-
Wittwer, A.J.1
Tsai, L.2
Ching, W.M.3
Stadtman, T.C.4
-
92
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia T., SantaLucia J., Burkard M.E., Kierzek R., Schroeder S.J., Jiao X., Cox C., and Turner D.H. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37 (1998) 14719-14735
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
SantaLucia, J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
95
-
-
0019913580
-
Translational efficiency of transfer RNA's: uses of an extended anticodon
-
Yarus M. Translational efficiency of transfer RNA's: uses of an extended anticodon. Science 218 (1982) 646-652
-
(1982)
Science
, vol.218
, pp. 646-652
-
-
Yarus, M.1
-
96
-
-
0023027061
-
The translational efficiency of tRNA is a property of the anticodon arm
-
Yarus M., Cline S., Raftery L., Wier P., and Bradley D. The translational efficiency of tRNA is a property of the anticodon arm. J. Biol. Chem. 261 (1986) 10496-10505
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 10496-10505
-
-
Yarus, M.1
Cline, S.2
Raftery, L.3
Wier, P.4
Bradley, D.5
-
97
-
-
0035801225
-
Wobble modification defect in tRNA desturbs codon-anticodon interaction in a mitochondrial disease
-
Yasukawa T., Suzuki T., Ishii N., Ohta S., and Watanabe K. Wobble modification defect in tRNA desturbs codon-anticodon interaction in a mitochondrial disease. EMBO J. 20 (2001) 4794-4802
-
(2001)
EMBO J.
, vol.20
, pp. 4794-4802
-
-
Yasukawa, T.1
Suzuki, T.2
Ishii, N.3
Ohta, S.4
Watanabe, K.5
-
98
-
-
0002365884
-
Modified nucleosides and codon recognition
-
Soll D., and RajBhandary U. (Eds), ASM Press, Washington, DC, USA
-
Yokoyama S., and Nishimura S. Modified nucleosides and codon recognition. In: Soll D., and RajBhandary U. (Eds). tRNA: Structure, Biosynthesis, and Function (1995), ASM Press, Washington, DC, USA 207-223
-
(1995)
tRNA: Structure, Biosynthesis, and Function
, pp. 207-223
-
-
Yokoyama, S.1
Nishimura, S.2
-
99
-
-
0000238430
-
Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon
-
Yokoyama S., Watanabe T., Murao K., Ishikura H., Yamaizumi Z., Nishimura S., and Miyazawa T. Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon. Proc. Natl Acad. Sci. USA 82 (1985) 4905-4909
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 4905-4909
-
-
Yokoyama, S.1
Watanabe, T.2
Murao, K.3
Ishikura, H.4
Yamaizumi, Z.5
Nishimura, S.6
Miyazawa, T.7
-
100
-
-
0026723118
-
Trp with CmCA anticodon
-
Trp with CmCA anticodon. EMBO J. 11 (1992) 4167-4173
-
(1992)
EMBO J.
, vol.11
, pp. 4167-4173
-
-
Zerfaß, K.1
Beier, H.2
|