Rhodanobacter spathiphylli sp. nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 8, 2006, Pages 1755-1759

  De Clercq, Deborah ^a   Van Trappen, Stefanie ^b   Cleenwerck, Ilse ^b   Ceustermans, An ^a   Swings, Jean ^b   Coosemans, Josef ^a   Ryckeboer, Jaak ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CYTOSINE; FATTY ACID; GUANINE; OXIDOREDUCTASE; RIBOSOME RNA; RNA 16S;

ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL PLANT DISEASE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; COMPOST; DNA CONTENT; DNA DNA HYBRIDIZATION; DYELLA JAPONICA; DYELLA KOREENSIS; FERMENTATION; FRATEURIA AURANTIA; FULVIMONAS SOLI; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANT ROOT; PRIORITY JOURNAL; RHIZOSPHERE; RHODANOBACTER FULVUS; RHODANOBACTER LINDANICLASTICUS; RHODANOBACTER SPATHIPHYLLI; ROOT ROT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TAXONOMY; TEMPERATURE SENSITIVITY;

ANTIBIOSIS; ARACEAE; BASE COMPOSITION; CATALASE; CULTURE MEDIA; DNA, BACTERIAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; HYPOCREALES; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHYLOGENY; PLANT DISEASES; PLANT ROOTS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

CALONECTRIA SPATHIPHYLLI; DYELLA JAPONICA; DYELLA KOREENSIS; FRATEURIA AURANTIA; FULVIMONAS SOLI; GAMMAPROTEOBACTERIA; NEGIBACTERIA; RHODANOBACTER; RHODANOBACTER FULVUS; RHODANOBACTER LINDANICLASTICUS; RHODANOBACTER SPATHIPHYLLI; SPATHIPHYLLUM;

EID: 33747879439     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64131-0     Document Type: Article

References (17)

1. Coenye, T., Falsen, E., Vancanneyt, M., Hoste, B., Govan, J. R., Kersters, K. & Vandamme, P. (1999). Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol 49, 405-413.
2. De Clercq, D., Vandesteene, L., Coosemans, J. & Ryckeboer, J. (2004). Use of compost as suppressor of plant diseases. In Resource Recovery and Reuse in Organic Solid Waste Management, pp. 317-337. Edited by P. Lens, B. Hamelers, H. A. J. Hoitink & W. Bidlingmaier. London: IWA Publishing.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Goris, J., Suzuki, K., De Vos, P., Nakase, T. & Kersters, K. (1998). Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44, 1148-1153.
5. Hoitink, H. A. J. & Boehm, M. J. (1999). Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon. Annu Rev Phytopathol 37, 427-446.
6. Im, W.-T., Lee, S. T. & Yokota, A. (2004). Rhodanobacter fulvus sp. nov., a β-galactosidase-producing gammaproteobacterium. J Gen Appl Microbiol 50, 143-147.
7. MacFaddin, J. F. (1980). Biochemical Tests for the Identification of Medical Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
8. Mergaert, J., Verhelst, A., Cnockaert, M. C., Tan, T.-L. & Swings, J. (2001). Characterization of facultative oligotrophic bacteria from polar seas by analysis of their fatty acids and 16S rDNA sequences. Syst Appl Microbiol 24, 98-107.
9. Mergaert, J., Cnockaert, M. C. & Swings, J. (2002). Fulvimonas soli gen. nov., sp. nov., a γ-proteobacterium isolated from soil after enrichment on acetylated starch plastics. Int J Syst Evol Microbiol 52, 1285-1289.
10. Nalin, R., Simonet, P., Vogel, T. M. & Normand, P. (1999). Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. Int J Syst Bacteriol 49, 19-23.
11. Niemann, S., Puehler, A., Tichy, H.-V., Simon, R. & Selbitschka, W. (1997). Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population. J Appl Microbiol 82, 477-484.
12. Ryckeboer, J., Mergaert, J., Vaes, K., Klammer, S., De Clercq, D., Coosemans, J., Insam, H. & Swings, J. (2003). A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53, 349-410.
13. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software spackage for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
14. Van Trappen, S., Mergaert, J. & Swings, J. (2003). Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 53, 1241-1245.
15. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 85-92.
16. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
17. Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Greene Publishing and Wiley-Interscience.