Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium

International Journal of Systematic Bacteriology

Volumn 49, Issue 1, 1999, Pages 19-23

  Nalin, Renaud ^a   Simonet, Pascal ^a   Vogel, Timothy M ^b   Normand, Philippe ^a  

^a UNIVERSITÉ LYON 1   (France)

^b SANOFI   (France)

Author keywords

Gamma hexachlorocyclohexane; Phylogeny of lindane degraders; Soil

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; GENE AMPLIFICATION; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHODANOBACTER; SEQUENCE ANALYSIS; SPHINGOMONAS PAUCIMOBILIS; TAXONOMY; XANTHOMONAS;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA; RHODANOBACTER; RHODANOBACTER LINDANICLASTICUS; SPHINGOMONAS PAUCIMOBILIS; XANTHOMONAS; XYLELLA;

EID: 0032913487     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-1-19     Document Type: Article

References (23)

1. Altshul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bhuyan, S., Sahu, S. K., Adhya, T. K. & Sethunathan, N. (1992). Accelerated aerobic degradation of γ-hexachlorocyclohexane in suspensions of flooded and non flooded soils pretreated with hexachlorocyclohexane. Biol Fertil Soils 12, 279-284.
3. Brenner, D. J., McWorter, A. C., Knuston, J. K. L. & Steigerwalt, A. G. (1982). Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds. J Clin Microbiol 15, 1133-1140.
4. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for the specific tree topology. Syst Zool 20, 406-416.
6. Galtier, N., Gouy, M. & Gautier, C. (1996). Seaview and PHYLOWIN: two graphic tools for sequence alignment and molecular phylogeny. Cabios 12, 543-548.
7. Jagnow, G., Haider, K. & Ellwardt, P. C. (1977). Anaerobic dechlorination and degradation of hexachlorocyclohexane isomers by anaerobic and facultative anaerobic bacteria. Arch Microbiol 115, 285-292.
8. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
9. MacRae, I. C., Raghu, K. & Bautista, E. M. (1969). Anaerobic degradation of the insecticide Lindane by Clostridium sp. Nature 221, 859-860.
10. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1997). The RDP (Ribosomal Database Project). Nucleic Acids Res 25, 109-111.
11. Normand, P., Orso, S., Cournoyer, B., Jeannin, P., Chapelon, C., Dawson, J., Evtushenko, L. & Misra, A. (1996). Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. Int J Syst Bacteriol 46, 1-9.
12. Ohisa, N., Yamaguchi, M. & Kuriara, N. (1980). Lindane degradation by cell-free extracts of Clostridium rectum. Arch Microbiol 125, 221-225.
13. Olsen, G. J., Matsuda, H., Hagstrom, R. & Overbeek, R. (1994). fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10, 41-48.
14. Peyret, M., Freney, J., Meugnier, H. & Fleurette, J. (1989). Determination of G + C content of DNA using HPLC for identification of staphylococci and micrococci. Res Microbiol 140, 467-475.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Senoo, K. & Wada, H. (1989). Isolation and identification of an aerobic γ-HCH-decomposing bacterium from soil. Soil Sci Plant Nutr 35, 79-87.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Thomas, J. C., Berger, F., Jacquier, M., Bernillon, D., Baud-Grasset, F., Truffaut, N., Normand, P., Vogel, T. M. & Simonet, P. (1996). Isolation and characterization of a novel γ-hexachlorohexane-degrading bacterium. J Bacteriol 178, 6049-6055.
19. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
20. Voerman, S. & Besemer, A. F. H. (1970). Residues of dieldrin, lindane, DDT and parathion in light sandy soil after repeated application throughout a period of 15 years. J Agric Food Chem 35, 71-77.
21. Vogel, T. M., Criddle, C. S. & McCarty, P. L. (1987). Transformation of halogenated aliphatic compounds. Environ Sci Technol 21, 722-736.
22. Wada, E. W. & Peel, D. A. (1989). Rapid degradation of γ-HCH in upland soil after multiple applications. Soil Sci Plant Nutr 35, 71-77.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.