-
1
-
-
84944214361
-
Hybrid modeling and simulation of biological systems
-
Fourth Intl. Workshop on Hybrid Systems: Computation and Control
-
R. Alur, C. Bella, F. Ivancic, V. Kumar, M. Mintz, G. Pappas, H. Rubin, and J. Schug. Hybrid modeling and simulation of biological systems. In Fourth Intl. Workshop on Hybrid Systems: Computation and Control, volume 2034 of LNCS, pages 19-32, 2001.
-
(2001)
LNCS
, vol.2034
, pp. 19-32
-
-
Alur, R.1
Bella, C.2
Ivancic, F.3
Kumar, V.4
Mintz, M.5
Pappas, G.6
Rubin, H.7
Schug, J.8
-
3
-
-
0030597511
-
Pattern formation by lateral inhibition with feedback: A mathematical model of Delta-Notch intercellular signalling
-
J. R. Collier, A. M. Monk, P. K. Maini, and J. H. Lewis. Pattern formation by lateral inhibition with feedback: A mathematical model of Delta-Notch intercellular signalling. J. of theor. Biology, 183:429-446, 1996.
-
(1996)
J. of Theor. Biology
, vol.183
, pp. 429-446
-
-
Collier, J.R.1
Monk, A.M.2
Maini, P.K.3
Lewis, J.H.4
-
4
-
-
0036500834
-
Reverse engineering of biological complexity
-
Marie E. Csete and John C. Doyle. Reverse engineering of biological complexity. Science, 295:1664-1669, 2002.
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
5
-
-
84958594976
-
Evolution as design engineer
-
Corrado Priami, editor, Springer
-
David L. Dill and Patrick Lincoln. Evolution as design engineer. In Corrado Priami, editor, Computational Methods in Systems Biology, First International Workshop, CMSB 2003, pages 202-206. Springer, 2003.
-
(2003)
Computational Methods in Systems Biology, First International Workshop, CMSB
, vol.2003
-
-
Dill, D.L.1
Lincoln, P.2
-
6
-
-
0036364829
-
Pathway logic: Symbolic analysis of biological signaling
-
Russ B. Altman et al, editor, January
-
Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, José Meseguer, and Kemal Sonmez. Pathway logic: Symbolic analysis of biological signaling. In Russ B. Altman et al, editor, Proceedings of the Pacific Symposium on Biocomputing 7, pages 400-412, January 2002.
-
(2002)
Proceedings of the Pacific Symposium on Biocomputing
, vol.7
, pp. 400-412
-
-
Eker, S.1
Knapp, M.2
Laderoute, K.3
Lincoln, P.4
Meseguer, J.5
Sonmez, K.6
-
7
-
-
0038407172
-
Model reduction and system identification for master equation control systems
-
Submitted for publication.
-
M. A. Gallivan and R. M. Murray. Model reduction and system identification for master equation control systems. In American Control Conference, 2003. Submitted for publication.
-
American Control Conference
, vol.2003
-
-
Gallivan, M.A.1
Murray, R.M.2
-
8
-
-
0346250869
-
Biospice: Biospice: Access to the most current computational tools for biologists
-
Thomas D. Garvey, Patrick Lincoln, Charles John Pedersen, David Martin, and Mark Johnson. Biospice: Biospice: Access to the most current computational tools for biologists. OMICS, 7(4):411-420, 2003.
-
(2003)
OMICS
, vol.7
, Issue.4
, pp. 411-420
-
-
Garvey, T.D.1
Lincoln, P.2
Pedersen, C.J.3
Martin, D.4
Johnson, M.5
-
9
-
-
35248832573
-
Automated symbolic reachability analysis with application to delta-notch signaling automata
-
O. Maler and A. Pnueli, editors, Hybrid Systems: Computation and Control HSCC, Springer, April
-
R. Ghosh, A. Tiwari, and C. Tomlin. Automated symbolic reachability analysis with application to delta-notch signaling automata. In O. Maler and A. Pnueli, editors, Hybrid Systems: Computation and Control HSCC, volume 2623 of LNCS, pages 233-248. Springer, April 2003.
-
(2003)
LNCS
, vol.2623
, pp. 233-248
-
-
Ghosh, R.1
Tiwari, A.2
Tomlin, C.3
-
10
-
-
84944196766
-
Lateral inhibition through delta-notch signaling: A piecewise affine hybrid model
-
M. D. D. Benedetto and A. SangiovanniVincentelli, editors, Hybrid Systems: Computation and Control, HSCC 2001
-
R. Ghosh and C. J. Tomlin. Lateral inhibition through delta-notch signaling: A piecewise affine hybrid model. In M. D. D. Benedetto and A. SangiovanniVincentelli, editors, Hybrid Systems: Computation and Control, HSCC 2001, volume 2034 of LNCS, pages 232-246, 2001.
-
(2001)
LNCS
, vol.2034
-
-
Ghosh, R.1
Tomlin, C.J.2
-
11
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
D. T. Gillespie. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Physics, 22:403-434, 1976.
-
(1976)
J. Comp. Physics
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
12
-
-
84947441305
-
Construction of abstract state graphs with PVS
-
O. Grumberg, editor, Springer Verlag
-
S. Graf and H. Saïdi. Construction of abstract state graphs with PVS. In O. Grumberg, editor, Proc. of 9th Conference on Computer-Aided Verification (CAV'97), volume 1254, pages 72-83. Springer Verlag, 1997.
-
(1997)
Proc. of 9th Conference on Computer-Aided Verification (CAV'97)
, vol.1254
, pp. 72-83
-
-
Graf, S.1
Saïdi, H.2
-
13
-
-
0018165319
-
A model of glucose-insulin homeostasis in man that incorporates the heterogeneous fast pool theory of pancreatic insulin release
-
J. R. Guyton, R. O. Foster, J. S. Soeldner, M. H. Tan, C. B. Kahn, L. Konez, and R. E. Gleason. A model of glucose-insulin homeostasis in man that incorporates the heterogeneous fast pool theory of pancreatic insulin release. Diabetes, 27:1027-1042, 1978.
-
(1978)
Diabetes
, vol.27
, pp. 1027-1042
-
-
Guyton, J.R.1
Foster, R.O.2
Soeldner, J.S.3
Tan, M.H.4
Kahn, C.B.5
Konez, L.6
Gleason, R.E.7
-
14
-
-
84947775363
-
Quantifier elimination in elementary algebra and geometry by partial cylindrical algebraic decomposition version 13
-
H. Hong. Quantifier elimination in elementary algebra and geometry by partial cylindrical algebraic decomposition version 13. In The world wide web, 1995. http: //www.gwdg.de/~cais/systeme/saclib, www.eecis.udel.edu/~saclib/.
-
The World Wide Web
, vol.1995
-
-
Hong, H.1
-
15
-
-
0037342537
-
The systems biology markup language (sbml): A medium for representation and exchange of biochemical network models
-
M. Hucka, A. Finney, H. M. Sauro, H. Bolouri, J. C. Doyle, H. Kitano, and et al. A. P. Arkin. The systems biology markup language (sbml): a medium for representation and exchange of biochemical network models. Bioinformatics, 19(4):524-531, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
-
16
-
-
35048844401
-
-
Hybridsal: Modeling and abstracting hybrid systems, 2003. Computer Science Laboratory, SRI International, Menlo Park, CA.
-
Hybridsal: Modeling and abstracting hybrid systems, 2003. Computer Science Laboratory, SRI International, Menlo Park, CA. http://www.csl.sri.com/ users/tiwari/HybridSalDoc.ps.
-
-
-
-
17
-
-
0035775725
-
A new approach to decoding life: Systems biology
-
Trey Ideker, Timothy Galitski, and Leroy Hood. A new approach to decoding life: Systems biology. Annual Review Genomics - Human Genetics, 2001.2:343-372, 2001.
-
(2001)
Annual Review Genomics - Human Genetics
, vol.2001
, Issue.2
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
18
-
-
0035860545
-
Pathway databases: A case study in computational symbolic theories
-
P.D. Karp. Pathway databases: A case study in computational symbolic theories. Science, 293:2040-2044, 2001.
-
(2001)
Science
, vol.293
, pp. 2040-2044
-
-
Karp, P.D.1
-
19
-
-
0036500993
-
Systems biology: An overview
-
H. Kitano. Systems biology: an overview. Science, 295:1662-1664, 2002.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
21
-
-
0142042996
-
Biospice: A computational infrastructure for integrative biology
-
Srikanta P. Kumar and Jordan C. Feidler. Biospice: A computational infrastructure for integrative biology. OMICS, 7(3):225-226, 2003.
-
(2003)
OMICS
, vol.7
, Issue.3
, pp. 225-226
-
-
Kumar, S.P.1
Feidler, J.C.2
-
22
-
-
0034671792
-
Global analysis of the genetic network controlling a bacterial cell cycle
-
M. Laub, H. McAdams, T. Feldbluym, C. Fraser, and L. Shapiro. Global analysis of the genetic network controlling a bacterial cell cycle. Science, 290:2144-2148, 2000.
-
(2000)
Science
, vol.290
, pp. 2144-2148
-
-
Laub, M.1
McAdams, H.2
Feldbluym, T.3
Fraser, C.4
Shapiro, L.5
-
23
-
-
0002531673
-
Delta-Notch lateral inhibitory patterning in the emergence of ciliated cells in xenopus: Experimental observations and a gene network model
-
G. Marnellos, G. A. Deblandre, E. Mjolsness, and C. Kintner. Delta-Notch lateral inhibitory patterning in the emergence of ciliated cells in xenopus: Experimental observations and a gene network model. Pacific symposium on biocomputing, 5:326-337, 2000.
-
(2000)
Pacific Symposium on Biocomputing
, vol.5
, pp. 326-337
-
-
Marnellos, G.1
Deblandre, G.A.2
Mjolsness, E.3
Kintner, C.4
-
24
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
H. H. McAdams and A. Arkin. Stochastic mechanisms in gene expression. In Proc. Natl. Acad. Sci. USA, volume 94, pages 814-819, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
25
-
-
0033083733
-
It's a noisy business! genetic regulation at the nanomolar scale
-
HH. McAdams and Arkin A. It's a noisy business! genetic regulation at the nanomolar scale. Trends in Genetics, 15(2):65-69, 1999.
-
(1999)
Trends in Genetics
, vol.15
, Issue.2
, pp. 65-69
-
-
McAdams, H.H.1
Arkin, A.2
-
28
-
-
35048816203
-
Computational Methods in Systems Biology, First International Workshop, CMSB 2003, Roverto, Italy, February 24-26, 2003, Proceedings
-
Corrado Priami, editor. Springer
-
Corrado Priami, editor. Computational Methods in Systems Biology, First International Workshop, CMSB 2003, Roverto, Italy, February 24-26, 2003, Proceedings, volume 2602 of Lecture Notes in Computer Science. Springer, 2003.
-
(2003)
Lecture Notes in Computer Science
, vol.2602
-
-
-
29
-
-
0035227944
-
Nutrient-related analysis of pathway/genome databases
-
R. Altman and T. Klein, editors, World Scientific, Singapore
-
P. Romero and P.D. Karp. Nutrient-related analysis of pathway/genome databases. In R. Altman and T. Klein, editors, Proceedings of the Pacific Symposium on Biocomputing, pages 471-482. World Scientific, Singapore, 2001.
-
(2001)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 471-482
-
-
Romero, P.1
Karp, P.D.2
-
32
-
-
2442669386
-
Pathway logic modeling of protein functional domains in signal transduction
-
RUSS B. Altman et al, editor, January
-
Carolyn Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, and Keith Laderoute. Pathway logic modeling of protein functional domains in signal transduction. In RUSS B. Altman et al, editor, Proceedings of the Pacific Symposium on Biocomputing, pages 568-580, January 2004.
-
(2004)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 568-580
-
-
Talcott, C.1
Eker, S.2
Knapp, M.3
Lincoln, P.4
Laderoute, K.5
-
33
-
-
35048830578
-
Abstraction based theorem proving: An example from the theory of reals
-
C. Tinelli and S. Ranise, editors, INRIA, Nancy, France
-
A. Tiwari. Abstraction based theorem proving: An example from the theory of reals. In C. Tinelli and S. Ranise, editors, Proceedings of the CADE-19 Workshop on Pragmatics of Decision Procedures in Automated Deduction, PDPAR 2003, pages 40-52. INRIA, Nancy, France, 2003.
-
(2003)
Proceedings of the CADE-19 Workshop on Pragmatics of Decision Procedures in Automated Deduction, PDPAR 2003
, pp. 40-52
-
-
Tiwari, A.1
-
34
-
-
35248856425
-
Approximate reachability for linear systems
-
O. Maler and A. Pnueli, editors, HSCC, Springer, April
-
A. Tiwari. Approximate reachability for linear systems. In O. Maler and A. Pnueli, editors, HSCC, volume 2623 of LNCS, pages 514-525. Springer, April 2003.
-
(2003)
LNCS
, vol.2623
, pp. 514-525
-
-
Tiwari, A.1
-
35
-
-
84945271493
-
Series of abstractions for hybrid automata
-
C. J. Tomlin and M. R. Greenstreet, editors, Hybrid Systems: Computation and Control, HSCC 2002
-
A. Tiwari and G. Khanna. Series of abstractions for hybrid automata. In C. J. Tomlin and M. R. Greenstreet, editors, Hybrid Systems: Computation and Control, HSCC 2002, volume 2289 of LNCS, pages 465-478, 2002.
-
(2002)
LNCS
, vol.2289
, pp. 465-478
-
-
Tiwari, A.1
Khanna, G.2
-
40
-
-
0012029771
-
A logical model of cis-regulatory control in a eukaryotic system
-
J. M. Bower and H. Bolouri, editors, MIT Press, Cambridge, MA
-
C. H. Yuh, H. Bolouri, J. M. Bower, and E. H. Davidson. A logical model of cis-regulatory control in a eukaryotic system. In J. M. Bower and H. Bolouri, editors, Computational Modeling of Genetic and Biochemical Networks, pages 73100. MIT Press, Cambridge, MA, 2001.
-
(2001)
Computational Modeling of Genetic and Biochemical Networks
, pp. 73100
-
-
Yuh, C.H.1
Bolouri, H.2
Bower, J.M.3
Davidson, E.H.4
|