SCOPUS 정보 검색 플랫폼

Journal of the American Chemical Society

Volumn 128, Issue 32, 2006, Pages 10541-10548

Competition between protein ligands and cytoplasmic inorganic anions for the metal cation: A DFT/CDM study

(2) Dudev, Todor a Lim, Carmay a,b

a INSTITUTE OF BIOMEDICAL SCIENCES (Taiwan)

b NATIONAL TSING HUA UNIVERSITY (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; CONCENTRATION (PROCESS); NEGATIVE IONS; NUCLEIC ACID SEQUENCES; PROBABILITY DENSITY FUNCTION; SOLVENTS;

CYTOPLASMIC FLUIDS; METAL CATIONS; METALLOPROTEINS; SIGNAL TRANSDUCTION;

PROTEINS;

AMIDE; ANION; ASPARTIC ACID; CALCIUM; CHLORINE; GLUTAMIC ACID; LIGAND; MAGNESIUM; METAL ION; METALLOPROTEIN; NITROGEN DIOXIDE; PHOSPHORIC ACID; POTASSIUM; PROTEIN; SODIUM; SULFATE;

ANALYTIC METHOD; AQUEOUS SOLUTION; ARTICLE; BINDING AFFINITY; CELL GROWTH; CELL METABOLISM; CELL PH; CELL VOLUME; CYTOPLASM; DENSITY FUNCTIONAL THEORY; DIELECTRIC CONTINUUM METHOD; METAL BINDING; MUSCLE CONTRACTION; SIGNAL TRANSDUCTION; SOLVATION;

BINDING SITES; CYTOPLASM; LIGANDS; MAGNESIUM; MODELS, BIOLOGICAL; PROTEINS; QUANTUM THEORY; SOLUTIONS; THERMODYNAMICS; WATER;

EID: 33747613338 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja063111s Document Type: Article

Times cited : (12)

References (66)

1
- 0025316255
- Yamashita, M. M.; Wesson, L.; Eisenman, G.; Eisenberg, D. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 5648-5657.
- (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 5648-5657
- Yamashita, M.M.¹ Wesson, L.² Eisenman, G.³ Eisenberg, D.⁴

2
- 0033743281
- Dudev, T.; Lim, C. J. Phys. Chem. B 2000, 104, 3692-3694.
- (2000) Phys. Chem. B , vol.104 , pp. 3692-3694
- Dudev, T.¹ Lim, C.J.²

3
- 0037366128
- Dudev, T.; Lim, C. Chem. Rev. 2003, 103, 773-787.
- (2003) Chem. Rev. , vol.103 , pp. 773-787
- Dudev, T.¹ Lim, C.²

4
- 0023043213
- Engeseth, H. R.; McMillin, D. R. Biochemistry 1986, 25, 2448-2455.
- (1986) Biochemistry , vol.25 , pp. 2448-2455
- Engeseth, H.R.¹ McMillin, D.R.²

5
- 0025950774
- Falke, J. J.; Snyder, E. E.; Thatcher, K. C.; Voertler, C. S. Biochemistry 1991, 30, 8690-8697.
- (1991) Biochemistry , vol.30 , pp. 8690-8697
- Falke, J.J.¹ Snyder, E.E.² Thatcher, K.C.³ Voertler, C.S.⁴

6
- 0030872564
- Drake, S. K.; Zimmer, M. A.; Kundrot, C.; Falke, J. J. J. Gen. Physiol. 1997, 110, 173-184.
- (1997) J. Gen. Physiol. , vol.110 , pp. 173-184
- Drake, S.K.¹ Zimmer, M.A.² Kundrot, C.³ Falke, J.J.⁴

7
- 0032054016
- Garmer, D. R.; Gresh, N.; Roques, B.-P. Proteins 1998, 31, 42-60.
- (1998) Proteins , vol.31 , pp. 42-60
- Garmer, D.R.¹ Gresh, N.² Roques, B.-P.³

8
- 0033551442
- Hunt, J. A.; Ahmed, M.; Fierke, C. A. Biochemistry 1999, 38, 9054-9062.
- (1999) Biochemistry , vol.38 , pp. 9054-9062
- Hunt, J.A.¹ Ahmed, M.² Fierke, C.A.³

9
- 0033520086
- Huang, D. T. C.; Thomas, M. A. W.; Christopherson, R. I. Biochemistry 1999, 38, 9964-9970.
- (1999) Biochemistry , vol.38 , pp. 9964-9970
- Huang, D.T.C.¹ Thomas, M.A.W.² Christopherson, R.I.³

10
- 0034712708
- Lee, L. V.; Poyner, R. R.; Vu, M. V.; Cleland, W. W. Biochemistry 2000, 39, 4821-4830.
- (2000) Biochemistry , vol.39 , pp. 4821-4830
- Lee, L.V.¹ Poyner, R.R.² Vu, M.V.³ Cleland, W.W.⁴

11
- 0034649340
- Cox, E. H.; Hunt, J. A.; Compher, K. M.; Fierke, C. A.; Christianson, D. W. Biochemistry 2000, 39, 13687-13694.
- (2000) Biochemistry , vol.39 , pp. 13687-13694
- Cox, E.H.¹ Hunt, J.A.² Compher, K.M.³ Fierke, C.A.⁴ Christianson, D.W.⁵

12
- 0041707971
- Babu, C. S.; Dudev, T.; Casareno, R.; Cowan, J. A.; Lim, C. J. Am. Chem. Soc. 2003, 125, 9318-9328.
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 9318-9328
- Babu, C.S.¹ Dudev, T.² Casareno, R.³ Cowan, J.A.⁴ Lim, C.⁵

13
- 0035902348
- Dudev, T.; Lim, C. J. Phys. Chem. B 2001, 105, 4446-4452.
- (2001) J. Phys. Chem. B , vol.105 , pp. 4446-4452
- Dudev, T.¹ Lim, C.²

14
- 0039930616
- Carrell, C. J.; Carrell, H. L.; Erlebacher, J.; Glusker, J. P. J. Am. Chem. Soc. 1988, 110, 8651-8656.
- (1988) J. Am. Chem. Soc. , vol.110 , pp. 8651-8656
- Carrell, C.J.¹ Carrell, H.L.² Erlebacher, J.³ Glusker, J.P.⁴

15
- 0028330140
- Jernigan, R.; Raghunathan, G.; Bahar, I. Curr. Opin. Struct. Biol. 1994, 4, 256-263.
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 256-263
- Jernigan, R.¹ Raghunathan, G.² Bahar, I.³

16
- 0038452402
- Rulisek, L.; Vondrasek, J. J. Inorg. Biochem. 1998, 71, 115-127.
- (1998) J. Inorg. Biochem. , vol.71 , pp. 115-127
- Rulisek, L.¹ Vondrasek, J.²

17
- 0033603838
- Dudev, T.; Cowan, J. A.; Lim, C. J. Am. Chem. Soc. 1999, 121, 7665-7673.
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 7665-7673
- Dudev, T.¹ Cowan, J.A.² Lim, C.³

18
- 0035094475
- Harding, M. M. Acta Crystallogr. 2001, D57, 401-411.
- (2001) Acta Crystallogr. , vol.D57 , pp. 401-411
- Harding, M.M.¹

19
- 32244438113
- Dudev, T.; Lim, C. J. Am. Chem. Soc. 2006, 128, 1553-1561.
- (2006) J. Am. Chem. Soc. , vol.128 , pp. 1553-1561
- Dudev, T.¹ Lim, C.²

20
- 0242500908
- Dudev, T.; Lin, Y. L.; Dudev, M.; Lim, C. J. Am. Chem. Soc. 2003, 125, 3168-3180.
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 3168-3180
- Dudev, T.¹ Lin, Y.L.² Dudev, M.³ Lim, C.⁴

21
- 0028007797
- Garmer, D. R.; Gresh, N. J. Am. Chem. Soc. 1994, 116, 3556-3567.
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 3556-3567
- Garmer, D.R.¹ Gresh, N.²

22
- 0034247470
- Mercero, J. M.; Fowler, J. E.; Ugalde, J. M. J. Phys. Chem. A 2000, 104, 7053-7060.
- (2000) J. Phys. Chem. A , vol.104 , pp. 7053-7060
- Mercero, J.M.¹ Fowler, J.E.² Ugalde, J.M.³

23
- 0034715456
- Rulisek, L.; Havlas, Z. J. Am. Chem. Soc. 2000, 122, 10428-10439.
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 10428-10439
- Rulisek, L.¹ Havlas, Z.²

24
- 0037129465
- Rulisek, L.; Havlas, Z. J. Phys. Chem. A 2002, 106, 3855-3866.
- (2002) J. Phys. Chem. A , vol.106 , pp. 3855-3866
- Rulisek, L.¹ Havlas, Z.²

25
- 0037108476
- Mercero, J. M.; Matxain, J. M.; Lopez, X.; Fowler, J. E.; Ugalde, J. M. Int. J. Quantum Chem. 2002, 90, 859-881.
- (2002) Int. J. Quantum Chem. , vol.90 , pp. 859-881
- Mercero, J.M.¹ Matxain, J.M.² Lopez, X.³ Fowler, J.E.⁴ Ugalde, J.M.⁵

26
- 0000865258
- Schachtman, D. P.; Reid, R. J.; Ayling, S. M. Plant Physiol. 1998, 116, 447-453.
- (1998) Plant Physiol. , vol.116 , pp. 447-453
- Schachtman, D.P.¹ Reid, R.J.² Ayling, S.M.³

27
- 0031707149
- Crawford, N. M.; Glass, A. D. M. Trends Plant Sci. 1998, 3, 389-395.
- (1998) Trends Plant Sci. , vol.3 , pp. 389-395
- Crawford, N.M.¹ Glass, A.D.M.²

28
- 31144454505
- Chloride channels
- Nature Publishing Group
- Akabas, M. H., Chloride channels. In Encyclopedia of Life Sciences, Nature Publishing Group: 2001; pp 1-7.
- (2001) Encyclopedia of Life Sciences , pp. 1-7
- Akabas, M.H.¹

29
- 0013921034
- Dreyfuss, J.; Pardee, A. B. J. Bacteriol. 1966, 91, 2275-2280.
- (1966) J. Bacteriol. , vol.91 , pp. 2275-2280
- Dreyfuss, J.¹ Pardee, A.B.²

30
- 0030968254
- Cruz, L.; Moroz, L. L.; Gillette, R.; Sweedler, J. V. J. Neurochem. 1997, 69, 110-115.
- (1997) J. Neurochem. , vol.69 , pp. 110-115
- Cruz, L.¹ Moroz, L.L.² Gillette, R.³ Sweedler, J.V.⁴

31
- 0001401757
- Rebeille, F.; Bligny, R.; Douce, R. Plant. Physiol. 1984, 1984, 355-359.
- (1984) Plant. Physiol. , vol.1984 , pp. 355-359
- Rebeille, F.¹ Bligny, R.² Douce, R.³

32
- 15544387803
- Kluge, S.; Weston, J. Biochemistry 2005, 44, 4877-4885.
- (2005) Biochemistry , vol.44 , pp. 4877-4885
- Kluge, S.¹ Weston, J.²

33
- 0001170423
- Gresh, N.; Garmer, D. R. J. Comput. Chem. 1996, 17, 1481-1495.
- (1996) J. Comput. Chem. , vol.17 , pp. 1481-1495
- Gresh, N.¹ Garmer, D.R.²

34
- 0003114799
- Cini, R.; Musaev, D. G.; Marzilli, L. G.; Morokuma, K. Theochem. 1997, 392, 55.
- (1997) Theochem. , vol.392 , pp. 55
- Cini, R.¹ Musaev, D.G.² Marzilli, L.G.³ Morokuma, K.⁴

35
- 0033581166
- Bock, C. W.; Katz, A. K.; Markham, G. D.; Glusker, J. P. J. Am. Chem. Soc. 1999, 121, 7360-7372.
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 7360-7372
- Bock, C.W.¹ Katz, A.K.² Markham, G.D.³ Glusker, J.P.⁴

36
- 0001683231
- Tiraboschi, G.; Roques, B.-P.; Gresh, N. J. Comput. Chem. 1999, 20, 1379-1390.
- (1999) J. Comput. Chem. , vol.20 , pp. 1379-1390
- Tiraboschi, G.¹ Roques, B.-P.² Gresh, N.³

37
- 0000111275
- Tiraboschi, G.; Gresh, N.; Giessner-Prettre, C.; Pedersen, L. G.; Deerfield, D. W. J. Comput. Chem. 2000, 21, 1011-1039.
- (2000) J. Comput. Chem. , vol.21 , pp. 1011-1039
- Tiraboschi, G.¹ Gresh, N.² Giessner-Prettre, C.³ Pedersen, L.G.⁴ Deerfield, D.W.⁵

38
- 0034715456
- Rulisek, L.; Havlas, Z. J. Am. Chem. Soc. 2000, 122, 10428-10439.
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 10428-10439
- Rulisek, L.¹ Havlas, Z.²

39
- 0037072003
- Gresh, N.; Policar, C.; Giessner-Prettre, C. J. Phys. Chem. A 2002, 106, 5660-5670.
- (2002) J. Phys. Chem. A , vol.106 , pp. 5660-5670
- Gresh, N.¹ Policar, C.² Giessner-Prettre, C.³

40
- 0344089285
- Rulisek, L.; Havlas, Z. J. Phys. Chem. B 2003, 107, 2376-2385.
- (2003) J. Phys. Chem. B , vol.107 , pp. 2376-2385
- Rulisek, L.¹ Havlas, Z.²

41
- 84962346078
- Mercero, J. M.; Matxain, J. M.; Rezabal, E.; Lopez, X.; Ugalde, J. M. Int. J. Quantum Chem. 2004, 98, 409-424.
- (2004) Int. J. Quantum Chem. , vol.98 , pp. 409-424
- Mercero, J.M.¹ Matxain, J.M.² Rezabal, E.³ Lopez, X.⁴ Ugalde, J.M.⁵

42
- 33244457564
- Rezabal, E.; Mercero, J. M.; Lopez, X.; Ugalde, J. M. J. Inorg. Biochem. 2006, 100, 374-384.
- (2006) J. Inorg. Biochem. , vol.100 , pp. 374-384
- Rezabal, E.¹ Mercero, J.M.² Lopez, X.³ Ugalde, J.M.⁴

43
- 0000050567
- Black, C. B.; Cowan, J. A. Inorg. Chem. 1994, 33, 5805-5808.
- (1994) Inorg. Chem. , vol.33 , pp. 5805-5808
- Black, C.B.¹ Cowan, J.A.²

44
- 0004289454
- VCH: New York
- Cowan, J. A. Biological Chemistry of Magnesium. VCH: New York, 1995.
- (1995) Biological Chemistry of Magnesium
- Cowan, J.A.¹

45
- 0000001528
- Cowan, J. A. Chem. Rev. 1998, 98, 1067-1087.
- (1998) Chem. Rev. , vol.98 , pp. 1067-1087
- Cowan, J.A.¹

46
- 2342417698
- Dudev, T.; Lim, C. J. Phys. Chem. B 2004, 108, 4546-4557.
- (2004) J. Phys. Chem. B , vol.108 , pp. 4546-4557
- Dudev, T.¹ Lim, C.²

47
- 15744392732
- Dudev, T.; Chang, L.-Y.; Lim, C. J. Am. Chem. Soc. 2005, 127, 4091-4103.
- (2005) J. Am. Chem. Soc. , vol.127 , pp. 4091-4103
- Dudev, T.¹ Chang, L.-Y.² Lim, C.³

48
- 0347777541
- Marcus, Y. Chem. Rev. 1988, 88, 1475-1498.
- (1988) Chem. Rev. , vol.88 , pp. 1475-1498
- Marcus, Y.¹

49
- 0003998388
- CRC: West Palm Beach, FL
- Weast, R. C. CRC Handbook of Chemistry and Physics. CRC: West Palm Beach, FL, 1978.
- (1978) CRC Handbook of Chemistry and Physics
- Weast, R.C.¹

50
- 1842444617
- Gaussian, Inc.: Pittsburgh, PA
- Frisch, M. J. et al. Gaussian 03, rev. B.03, Gaussian, Inc.: Pittsburgh, PA, 2003.
- (2003) Gaussian 03, Rev. B.03
- Frisch, M.J.¹

51
- 0003527976
- Harper and Row: New York
- McQuarrie, D. A. Statistical Mechanics. Harper and Row: New York, 1976.
- (1976) Statistical Mechanics
- McQuarrie, D.A.¹

52
- 0030570305
- Wong, M. W. Chem. Phys. Lett. 1996, 256, 391-399.
- (1996) Chem. Phys. Lett. , vol.256 , pp. 391-399
- Wong, M.W.¹

53
- 0022816745
- Gilson, M. K.; Honig, B. Biopolymers 1986, 25, 2097-2119.
- (1986) Biopolymers , vol.25 , pp. 2097-2119
- Gilson, M.K.¹ Honig, B.²

54
- 33751500123
- Lim, C.; Bashford, D.; Karplus, M. J. Phys. Chem. 1991, 95, 5610-5620.
- (1991) J. Phys. Chem. , vol.95 , pp. 5610-5620
- Lim, C.¹ Bashford, D.² Karplus, M.³

55
- 84957665033
- An object oriented programming suite for electrostatic effects in biological molecules
- Ishikawa, Y.; Oldehoeft, R. R.; Reynders, V. W.; Tholburn, M., Eds. Springer: Berlin
- Bashford, D., An object oriented programming suite for electrostatic effects in biological molecules. In Scientific Computing in Object-Oriented Parallel Environments, Ishikawa, Y.; Oldehoeft, R. R.; Reynders, V. W.; Tholburn, M., Eds. Springer: Berlin, 1997; Vol. 1343, pp 233-240.
- (1997) Scientific Computing in Object-Oriented Parallel Environments , vol.1343 , pp. 233-240
- Bashford, D.¹

56
- 84986512474
- Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187-217.
- (1983) J. Comput. Chem. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.⁶

57
- 0017411710
- Bernstein, F. C.; Koetzle, T. F.; Williams, G. J. B.; Meyer, E. F.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. J. Mol. Biol. 1977, 122, 535-542.
- (1977) J. Mol. Biol. , vol.122 , pp. 535-542
- Bernstein, F.C.¹ Koetzle, T.F.² Williams, G.J.B.³ Meyer, E.F.⁴ Brice, M.D.⁵ Rodgers, J.R.⁶ Kennard, O.⁷ Shimanouchi, T.⁸ Tasumi, M.⁹

58
- 0001752768
- Allen, F. H. Acta Crystallogr. 2002, B58, 380-388.
- (2002) Acta Crystallogr. , vol.B58 , pp. 380-388
- Allen, F.H.¹

59
- 33645903407
- Ben-Naim, A.; Marcus, Y. J. Chem. Phys. 1984, 81 (4), 2016-2027.
- (1984) J. Chem. Phys. , vol.81 , Issue.4 , pp. 2016-2027
- Ben-Naim, A.¹ Marcus, Y.²

60
- 0001999723
- Thermodynamics of ionic hydration
- Franks, F., Ed. Plenum Press: New York
- Friedman, H. L.; Krishnan, C. V., Thermodynamics of ionic hydration. In Water: A comprehensive treatise, Franks, F., Ed. Plenum Press: New York, 1973; Vol. 3, pp 1-118.
- (1973) Water: A Comprehensive Treatise , vol.3 , pp. 1-118
- Friedman, H.L.¹ Krishnan, C.V.²

61
- 0001609640
- Dudev, T.; Lim, C. J. Phys. Chem. A 1999, 103, 8093-8100.
- (1999) J. Phys. Chem. A , vol.103 , pp. 8093-8100
- Dudev, T.¹ Lim, C.²

62
- 0003421978
- Plenum Press
- Martell, A. E. Critical Stability Constants. Plenum Press: 1984.
- (1984) Critical Stability Constants
- Martell, A.E.¹

63
- 20544469463
- Lu, Z.; Dunaway-Mariano, D.; Allen, K. N. Biochemistry 2005, 44, 8684-8696.
- (2005) Biochemistry , vol.44 , pp. 8684-8696
- Lu, Z.¹ Dunaway-Mariano, D.² Allen, K.N.³

64
- 1842481140
- Rinaldo-Matthis, A.; Rampazzo, C.; Balzarini, J.; Reichard, P.; Bianchi, V.; Nordlund, P. Mol. Pharmacol. 2004, 65, 860-867.
- (2004) Mol. Pharmacol. , vol.65 , pp. 860-867
- Rinaldo-Matthis, A.¹ Rampazzo, C.² Balzarini, J.³ Reichard, P.⁴ Bianchi, V.⁵ Nordlund, P.⁶

65
- 0036301579
- Wang, W.; Cho, H. S.; Kim, R.; Jancarik, J.; Yokota, H.; Nguyen, H. H.; Grigoriev, I. V.; Wemmer, D. E.; Kim, S.-H. J. Mol. Biol. 2002, 319, 421-431.
- (2002) J. Mol. Biol. , vol.319 , pp. 421-431
- Wang, W.¹ Cho, H.S.² Kim, R.³ Jancarik, J.⁴ Yokota, H.⁵ Nguyen, H.H.⁶ Grigoriev, I.V.⁷ Wemmer, D.E.⁸ Kim, S.-H.⁹

66
- 29144525438
- Calderone, V.; Forleo, C.; Benvenuti, M.; Thaller, M. C.; Rossolini, G. M.; Mangani, S. J. Mol. Biol. 2006, 355, 708-721.
- (2006) J. Mol. Biol. , vol.355 , pp. 708-721
- Calderone, V.¹ Forleo, C.² Benvenuti, M.³ Thaller, M.C.⁴ Rossolini, G.M.⁵ Mangani, S.⁶

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.