Metal binding in proteins: The effect of the dielectric medium

Journal of Physical Chemistry B

Volumn 104, Issue 15, 2000, Pages 3692-3694

  Dudev, Todor ^a,b,c   Lim, Carmay ^b,d  

^a INSTITUTE OF BIOMEDICAL SCIENCES   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c ACADEMIA SINICA   (Taiwan)

^d UNIVERSITY OF SOFIA   (Bulgaria)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BINDING ENERGY; DIELECTRIC MATERIALS; FREE ENERGY; HYDROPHOBICITY; ION EXCHANGE;

METAL BINDING; PROTEIN LIGANDS;

PROTEINS;

EID: 0033743281     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp9941559     Document Type: Article

References (22)

1. Yamashita, M. M.; Wesson, L.; Eisenman, G.; Eisenberg, D. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 5648.
2. Black, C. B.; Huang, H. W.; Cowan, J. A. Coord Chem. Rev. 1994, 135/136, 165.
3. Cowan, J. A. Biological Chemistry of Magnesium; VCH: New York, 1995.
4. Harvey, S. C.; Hoekstra, P. J. Phys. Chem. 1972, 76, 2987.
5. Gilson, M. K.; Honig, B. Biopolymers 1986, 25, 2097.
6. Jernigan, R.; Raghunathan, G.; Bahar, I. Curr. Opin. Stnict. Biol. 1994, 4, 256.
7. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. -x W.; Johnson, B. G.; Chen, W.; Wong, M. W.; Andres, J. L.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.5; Gaussian, Inc.: Pittsburgh, PA, 1998.
8. Hehre, W. J.; Radom, L.; Schleyer, P. v. R.; Pople, J. A. Ab Initio Molecular Orbital Theory; John Wiley and Sons: New York, 1986.
9. McQuarrie, D. A. Statistical Mechanics; Harper and Row: New York, 1976.
10. Dudev, T.; Cowan, J. A.; Lim, C. J. Am. Chem. Soc. 1999, 121, 7665.
11. Glendening, E. D.; Feller, D. J. Phys. Chem. 1996, 100, 4790.
12. Katz, A. K.; Glusker, J. P.; Beebe, S. A.; Bock, C. W. J. Am. Chem. Soc. 1996, 118, 5752.
13. Pavlov, M.; Siegbahn, P. E. M.; Sandström, M. J. Phys. Chem. A 1998, 102, 219.
14. Gilson, M. K.; Honig, B. Proteins: Struct. Funct. Genet. 1988, 4, 7.
15. Lim, C.; Bashford, D.; Karplus, M. J. Phys. Chem. 1991, 95, 5610.
16. Weinhold, F.; Carpenter, J. E. Tlie Structure of Small Molecules and Ions; Plenum: New York, 1988; Vol. 227.
17. Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem 1983, 4, 187.
18. Marcus, Y. Chem. Rev. 1988, 88, 1475.
19. Chan, S. L.; Lim, C. J. Phys. Chem. 1994, 98, 692.
20. Born, M. Z Phys. 1920, 1, 45.
21. Glusker, J. P. Adv. Protein Chem. 1991, 42, 1.
22. Arnold, F. H.; Haymore, B. L. Science 1991, 252, 1796.