메뉴 건너뛰기




Volumn 116, Issue 1, 2006, Pages 57-68

The use of ARMS PCR in detection and identification of xanthomonads associated with pistachio dieback in Australia

Author keywords

16S 23S rDNA sequencing; Multiplex PCR; Xanthomonas translucens

Indexed keywords

BACTERIUM; DECIDUOUS TREE; DIEBACK; DISEASE INCIDENCE; DNA; GROWTH RATE; ORCHARD; PATHOGEN; POLYMERASE CHAIN REACTION;

EID: 33747608867     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-006-9038-z     Document Type: Article
Times cited : (12)

References (36)
  • 1
    • 7444261570 scopus 로고    scopus 로고
    • PCR-mediated detection of Xanthomonas oryzae pv. oryzae by amplification of the 16S-23S rDNA spacer region sequence
    • Adachi N and Oku T (2000) PCR-mediated detection of Xanthomonas oryzae pv. oryzae by amplification of the 16S-23S rDNA spacer region sequence. Journal of General Plant Pathology 66: 303-309.
    • (2000) Journal of General Plant Pathology , vol.66 , pp. 303-309
    • Adachi, N.1    Oku, T.2
  • 2
    • 33747605825 scopus 로고    scopus 로고
    • Serological techniques
    • Schaad NW, Jones JB and Chun W (eds.) 3rd edition, American Phytopathological Society, St. Paul, Minnesota, USA
    • Alvarez A (2001) Serological techniques. In: Schaad NW, Jones JB and Chun W (eds.) Laboratory Guide for Identification of Plant Pathogenic Bacteria (pp. 338-339), 3rd edition, American Phytopathological Society, St. Paul, Minnesota, USA.
    • (2001) Laboratory Guide for Identification of Plant Pathogenic Bacteria , pp. 338-339
    • Alvarez, A.1
  • 3
    • 33747591934 scopus 로고    scopus 로고
    • Pistachio Growers Association Incorporated, Horticulture Australia Limited, Sydney, Australia
    • Anon. (2002) Pistachio Growers Association Strategic Plan, Pistachio Growers Association Incorporated, Horticulture Australia Limited, Sydney, Australia.
    • (2002) Pistachio Growers Association Strategic Plan
  • 4
    • 1842332360 scopus 로고
    • Serological relationships among membrane proteins of strains of Xanthomonas campestris pv. translucens
    • Azad H and Schaad NW (1988) Serological relationships among membrane proteins of strains of Xanthomonas campestris pv. translucens. Phytopathology 78: 272-277.
    • (1988) Phytopathology , vol.78 , pp. 272-277
    • Azad, H.1    Schaad, N.W.2
  • 5
    • 0026207421 scopus 로고
    • The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria
    • Barry T, Glennon CM, Dunican LK and Gannon F (1991) The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods and Applications 1: 51-56.
    • (1991) PCR Methods and Applications , vol.1 , pp. 51-56
    • Barry, T.1    Glennon, C.M.2    Dunican, L.K.3    Gannon, F.4
  • 6
    • 1842365747 scopus 로고
    • Monoclonal antibodies specific for Xanthomonas campestris bacteria pathogenic on wheat and other small grain, in comparison with polyclonal antisera
    • Bragard C and Verhoyen M (1993) Monoclonal antibodies specific for Xanthomonas campestris bacteria pathogenic on wheat and other small grain, in comparison with polyclonal antisera. Journal of Phytopathology 139: 217-228.
    • (1993) Journal of Phytopathology , vol.139 , pp. 217-228
    • Bragard, C.1    Verhoyen, M.2
  • 7
    • 0000006771 scopus 로고
    • Nucleic acid probes for identification of phytobacteria: Identification of genus-specific 16S rRNA sequences
    • DeParasis J and Roth DA (1990) Nucleic acid probes for identification of phytobacteria: Identification of genus-specific 16S rRNA sequences. Phytopathology 80: 618-621.
    • (1990) Phytopathology , vol.80 , pp. 618-621
    • DeParasis, J.1    Roth, D.A.2
  • 11
    • 0344406258 scopus 로고    scopus 로고
    • Rapid detection of rpoB gene mutations in rifampin-resistant Mycobacterium tuberculosis isolates in Shanghai by using the amplification refractory mutation system
    • Fan XY, Hu ZY, Xu FH, Yan ZQ, Guo SQ and Li ZM (2003) Rapid detection of rpoB gene mutations in rifampin-resistant Mycobacterium tuberculosis isolates in Shanghai by using the amplification refractory mutation system. Journal of Clinical Microbiology 41: 993-997.
    • (2003) Journal of Clinical Microbiology , vol.41 , pp. 993-997
    • Fan, X.Y.1    Hu, Z.Y.2    Xu, F.H.3    Yan, Z.Q.4    Guo, S.Q.5    Li, Z.M.6
  • 12
    • 0031855786 scopus 로고    scopus 로고
    • Sensitive and specific detection of Clavibacter xyli subsp. xyli, causal agent of ratoon stunting disease of sugarcane, with a polymerase chain reaction-based assay
    • Fegan M, Croft BJ, Teakle DS, Hayward AC and Smith GR (1998) Sensitive and specific detection of Clavibacter xyli subsp. xyli, causal agent of ratoon stunting disease of sugarcane, with a polymerase chain reaction-based assay. Plant Pathology 47: 495-504.
    • (1998) Plant Pathology , vol.47 , pp. 495-504
    • Fegan, M.1    Croft, B.J.2    Teakle, D.S.3    Hayward, A.C.4    Smith, G.R.5
  • 13
    • 0017347967 scopus 로고
    • Comparative cataloging of 16S ribosomal ribonucleic acid: Molecular approach to procaryotic systematic
    • Fox GE, Pechman KR and Woese CR (1977) Comparative cataloging of 16S ribosomal ribonucleic acid: Molecular approach to procaryotic systematic. International Journal of Systematic Bacteriology 27: 44-57.
    • (1977) International Journal of Systematic Bacteriology , vol.27 , pp. 44-57
    • Fox, G.E.1    Pechman, K.R.2    Woese, C.R.3
  • 14
    • 0036126007 scopus 로고    scopus 로고
    • Simultaneous PCR detection of the two major bacterial pathogens of geranium
    • Glick DL, Coffey CM and Sulzinski MA (2002) Simultaneous PCR detection of the two major bacterial pathogens of geranium. Journal of Phytopathology 150: 54-59.
    • (2002) Journal of Phytopathology , vol.150 , pp. 54-59
    • Glick, D.L.1    Coffey, C.M.2    Sulzinski, M.A.3
  • 15
    • 0343619385 scopus 로고    scopus 로고
    • Genotypic characterization of xanthomonad strains isolated from passion fruit plants (Passiflora spp.) and their relatedness to different Xanthomonas species
    • Goncalves ER and Rosato YB (2000) Genotypic characterization of xanthomonad strains isolated from passion fruit plants (Passiflora spp.) and their relatedness to different Xanthomonas species. International Journal of Systematic and Evolutionary Microbiology 50: 811-821.
    • (2000) International Journal of Systematic and Evolutionary Microbiology , vol.50 , pp. 811-821
    • Goncalves, E.R.1    Rosato, Y.B.2
  • 17
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gurtler V and Stanisich VA (1996) New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142: 3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gurtler, V.1    Stanisich, V.A.2
  • 20
    • 0029566239 scopus 로고
    • tDNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans
    • Honeycutt RJ, Sobral BWS and McClelland M (1995) tDNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans. Microbiology 141: 3229-3239.
    • (1995) Microbiology , vol.141 , pp. 3229-3239
    • Honeycutt, R.J.1    Sobral, B.W.S.2    McClelland, M.3
  • 21
    • 0035169758 scopus 로고    scopus 로고
    • Scorpion ARMS primers for SNP real-time PCR detection and quantification of Pyrenophora teres
    • Jayne AB and Taylor EJA (2001) Scorpion ARMS primers for SNP real-time PCR detection and quantification of Pyrenophora teres. Molecular Plant Pathology 2: 275-280.
    • (2001) Molecular Plant Pathology , vol.2 , pp. 275-280
    • Jayne, A.B.1    Taylor, E.J.A.2
  • 22
    • 0026552444 scopus 로고
    • An efficient method for isolation of RNA and DNA from plants containing polyphenolics
    • John ME (1992) An efficient method for isolation of RNA and DNA from plants containing polyphenolics. Nucleic Acids Research 20: 2381.
    • (1992) Nucleic Acids Research , vol.20 , pp. 2381
    • John, M.E.1
  • 23
    • 0033081270 scopus 로고    scopus 로고
    • Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA
    • Koonjul PK, Brandt WF, Farrant JM and Lindsey GG (1999) Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA. Nucleic Acids Research. 27: 915-916.
    • (1999) Nucleic Acids Research , vol.27 , pp. 915-916
    • Koonjul, P.K.1    Brandt, W.F.2    Farrant, J.M.3    Lindsey, G.G.4
  • 24
    • 0001857117 scopus 로고
    • Small subunit ribosomal RNA sequences and primers. Large subunit ribosomal RNA sequences and primers
    • Goodfellow E. (ed.) John Wiley & Sons, Chichester, UK
    • Lane DJ (1991) Small subunit ribosomal RNA sequences and primers. Large subunit ribosomal RNA sequences and primers. In: Goodfellow E. (ed.) Nucleic Acid Techniques in Bacterial Systematics (pp. 148-175) John Wiley & Sons, Chichester, UK.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 148-175
    • Lane, D.J.1
  • 25
    • 0032719005 scopus 로고    scopus 로고
    • The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis
    • Louws FJ, Rademaker JLW and deBruijn FJ (1999) The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis. Annual Review of Phytopathology 37: 81-125.
    • (1999) Annual Review of Phytopathology , vol.37 , pp. 81-125
    • Louws, F.J.1    Rademaker, J.L.W.2    DeBruijn, F.J.3
  • 27
    • 0030499746 scopus 로고    scopus 로고
    • Identification and sensitive endophytic detection of the fire blight pathogen Erwinia amylovora with 23S ribosomal DNA sequences and the polymerase chain reaction
    • Maes M, Garbeva P and Crepel C (1996a) Identification and sensitive endophytic detection of the fire blight pathogen Erwinia amylovora with 23S ribosomal DNA sequences and the polymerase chain reaction. Plant Pathology 45: 1139-1149.
    • (1996) Plant Pathology , vol.45 , pp. 1139-1149
    • Maes, M.1    Garbeva, P.2    Crepel, C.3
  • 28
    • 0030039311 scopus 로고    scopus 로고
    • Recognition and detection in seed of the Xanthomonas pathogens that cause cereal leaf streak using rDNA spacer sequences and polymerase chain reaction
    • Maes M, Garbeva P and Kamoen O (1996b) Recognition and detection in seed of the Xanthomonas pathogens that cause cereal leaf streak using rDNA spacer sequences and polymerase chain reaction. Phytopathology 86: 63-69.
    • (1996) Phytopathology , vol.86 , pp. 63-69
    • Maes, M.1    Garbeva, P.2    Kamoen, O.3
  • 29
    • 33747598064 scopus 로고    scopus 로고
    • Genetic, phenotypic and pathogenic diversity among xanthomonads isolated from pistachio (Pistacia vera) in Australia
    • DOI: 10.1111/j.1365-3059.2006.01437-x
    • Marefat A, Scott ES, Ophel-Keller K and Sedgley M (2006) Genetic, phenotypic and pathogenic diversity among xanthomonads isolated from pistachio (Pistacia vera) in Australia. Plant Pathology. DOI: 10.1111/j.1365-3059.2006. 01437-x.
    • (2006) Plant Pathology
    • Marefat, A.1    Scott, E.S.2    Ophel-Keller, K.3    Sedgley, M.4
  • 30
    • 7444234267 scopus 로고    scopus 로고
    • Development of PCR-based assays for detecting Xanthomonas campestris pv. carotae, the carrot bacterial leaf blight pathogen, from different substrates
    • Meng XQ, Umesh KC, Davis RM and Gilbertson RL (2004) Development of PCR-based assays for detecting Xanthomonas campestris pv. carotae, the carrot bacterial leaf blight pathogen, from different substrates. Plant Disease 88: 1226-1234.
    • (2004) Plant Disease , vol.88 , pp. 1226-1234
    • Meng, X.Q.1    Umesh, K.C.2    Davis, R.M.3    Gilbertson, R.L.4
  • 32
    • 0031030051 scopus 로고    scopus 로고
    • A polymerase chain reaction protocol for the detection of Xanthomonas albilineans, the causal agent of sugarcane leaf scald disease
    • Pan YB, Grisham MP and Burner DM (1997) A polymerase chain reaction protocol for the detection of Xanthomonas albilineans, the causal agent of sugarcane leaf scald disease. Plant Disease 81: 189-194.
    • (1997) Plant Disease , vol.81 , pp. 189-194
    • Pan, Y.B.1    Grisham, M.P.2    Burner, D.M.3
  • 33
    • 0002924916 scopus 로고    scopus 로고
    • Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis
    • Caetano-Anolles G and Gresshoff PM (eds.) John Wiley & Sons, New York, USA
    • Rademaker JLW and deBruijn FJ (1997) Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In: Caetano-Anolles G and Gresshoff PM (eds.) DNA Markers: Protocols, Application and Overviews (pp. 151-171) John Wiley & Sons, New York, USA.
    • (1997) DNA Markers: Protocols, Application and Overviews , pp. 151-171
    • Rademaker, J.L.W.1    DeBruijn, F.J.2
  • 34
    • 33747626544 scopus 로고
    • Saettler AW Schaad NW Roth DA(eds.) American Phytopathological Society, St. Paul, Minnesota, USA
    • Saettler AW Schaad NW Roth DA(eds.) (1989) Detection of Bacteria in Seed and Other Planting Material, American Phytopathological Society, St. Paul, Minnesota, USA, 127.
    • (1989) Detection of Bacteria in Seed and Other Planting Material , pp. 127
  • 35
    • 0003790158 scopus 로고    scopus 로고
    • Schaad NW Jones JB Chun W(eds.) American Phytopathological Society, St. Paul, Minnesota, USA
    • Schaad NW Jones JB Chun W(eds.) (2001) Laboratory Guide for Identification of Plant Pathogenic Bacteria, 3rd edn. American Phytopathological Society, St. Paul, Minnesota, USA, 373.
    • (2001) Laboratory Guide for Identification of Plant Pathogenic Bacteria, 3rd Edn. , pp. 373


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.