메뉴 건너뛰기




Volumn 47, Issue 4, 1998, Pages 495-504

Sensitive and specific detection of Clavibacter xyli subsp. xyli, causal agent of ratoon stunting disease of sugarcane, with a polymerase chain reaction-based assay

Author keywords

[No Author keywords available]

Indexed keywords

DETECTION; DISEASE DETECTION; EXTRACTION; INTERNAL TRANSCRIBED SPACER REGION; OPERON; PATHOGENICITY; POLYMERASE CHAIN REACTION; RATOON STUNTING DISEASE; RRNA GENE; SUGARCANE;

EID: 0031855786     PISSN: 00320862     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-3059.1998.00255.x     Document Type: Article
Times cited : (52)

References (40)
  • 1
    • 0026207421 scopus 로고
    • The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR
    • Barry T, Colleran G, Glennon M, Dunican LK, Gannon F, 1991. The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods and Applications 1, 51-6.
    • (1991) Methods and Applications , vol.1 , pp. 51-56
    • Barry, T.1    Colleran, G.2    Glennon, M.3    Dunican, L.K.4    Gannon, F.5
  • 2
    • 0027918709 scopus 로고
    • Detection of Mycobacteriutn bovis in bovine blood by combined PCR and DNA probe methods
    • Barry T, Glennon M, Smith T, Gannon F, 1993. Detection of Mycobacteriutn bovis in bovine blood by combined PCR and DNA probe methods. Veterinary Record 132, 66-7.
    • (1993) Veterinary Record , vol.132 , pp. 66-67
    • Barry, T.1    Glennon, M.2    Smith, T.3    Gannon, F.4
  • 4
    • 3543005525 scopus 로고
    • IMI descriptions of fungi and bacteria No. 1041
    • Bradbury JF, 1991. IMI descriptions of fungi and bacteria No. 1041. Mycopathologia 115, 45-52.
    • (1991) Mycopathologia , vol.115 , pp. 45-52
    • Bradbury, J.F.1
  • 5
    • 0141835116 scopus 로고
    • Development and application of cloned DNA probes for Clavihacter xyli subsp. xyli, the causal agent of sugarcane ratoon stunting
    • Chung CH, Lin CP, Chen CT, 1994. Development and application of cloned DNA probes for Clavihacter xyli subsp. xyli, the causal agent of sugarcane ratoon stunting. Journal of Phytopathology 141, 293-301.
    • (1994) Journal of Phytopathology , vol.141 , pp. 293-301
    • Chung, C.H.1    Lin, C.P.2    Chen, C.T.3
  • 7
    • 0348035796 scopus 로고
    • Moulded unit for positive pressure extraction of ratoon stunting disease bacteria
    • Croft BJ, Witherspoon JR, 1982. Moulded unit for positive pressure extraction of ratoon stunting disease bacteria. Sugarcane Pathologist Newsletter 28, 33-4.
    • (1982) Sugarcane Pathologist Newsletter , vol.28 , pp. 33-34
    • Croft, B.J.1    Witherspoon, J.R.2
  • 8
    • 2642686579 scopus 로고
    • Direct-count techniques for enumerating Clavibacter xyli subsp. xyli which causes ratoon stunting disease of sugarcane
    • Davis MJ, 1985. Direct-count techniques for enumerating Clavibacter xyli subsp. xyli which causes ratoon stunting disease of sugarcane. Phytopathology 75, 1226-31.
    • (1985) Phytopathology , vol.75 , pp. 1226-1231
    • Davis, M.J.1
  • 9
    • 0021255515 scopus 로고
    • Clavibacter: A new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermuda grass stunting disease
    • Davis MJ, Gillaspie AG Jr, Vidaver AK, Harris RW, 1984. Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermuda grass stunting disease. International Journal of Systematic Bacteriology 34, 107-17.
    • (1984) International Journal of Systematic Bacteriology , vol.34 , pp. 107-117
    • Davis, M.J.1    Gillaspie Jr., A.G.2    Vidaver, A.K.3    Harris, R.W.4
  • 10
    • 0003149498 scopus 로고
    • Properties and relationships of two xylem-limited bacteria and a mycoplasmalike organism infecting bermuda grass
    • Davis MJ, Lawson RH, Gillaspie AG, Harris RW, 1983. Properties and relationships of two xylem-limited bacteria and a mycoplasmalike organism infecting bermuda grass. Phytopathology 73, 341-6.
    • (1983) Phytopathology , vol.73 , pp. 341-346
    • Davis, M.J.1    Lawson, R.H.2    Gillaspie, A.G.3    Harris, R.W.4
  • 11
    • 0027506857 scopus 로고
    • Molecular characterization of DNA encoding 23S rRNA and 16S-23S rRNA intergenic spacer regions of Aeromonas hydrophila
    • East AK, Collins MD, 1993. Molecular characterization of DNA encoding 23S rRNA and 16S-23S rRNA intergenic spacer regions of Aeromonas hydrophila. FEMS Microbiology Letters 106, 129-34.
    • (1993) FEMS Microbiology Letters , vol.106 , pp. 129-134
    • East, A.K.1    Collins, M.D.2
  • 12
    • 0002074827 scopus 로고
    • Ratoon stunting disease
    • Ricaud C, Egan BT, Gillaspie AG Jr, Hughes CG, eds. Amsterdam, Netherlands: Elsevier
    • Gillaspie AG Jr, Teakle DS, 1989. Ratoon stunting disease. In: Ricaud C, Egan BT, Gillaspie AG Jr, Hughes CG, eds. Diseases of Sugarcane. Amsterdam, Netherlands: Elsevier, 59-80.
    • (1989) Diseases of Sugarcane , pp. 59-80
    • Gillaspie Jr., A.G.1    Teakle, D.S.2
  • 13
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gůrtler V, Stanisich VA, 1996. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142, 3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gůrtler, V.1    Stanisich, V.A.2
  • 15
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignments on a microcomputer
    • Higgins DG, Sharp PM, 1988. CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73, 237-44.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 16
    • 0026254627 scopus 로고
    • OSP: A computer program for choosing PCR and DNA sequencing primers
    • Hiller L, Green P, 1991. OSP: a computer program for choosing PCR and DNA sequencing primers. PCR Methods and Applications 1, 124-8.
    • (1991) PCR Methods and Applications , vol.1 , pp. 124-128
    • Hiller, L.1    Green, P.2
  • 17
    • 0029566239 scopus 로고
    • tRNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans
    • Honeycutt RJ, Sobral BWS, McClelland M, 1995. tRNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans. Microbiology 141, 3229-39.
    • (1995) Microbiology , vol.141 , pp. 3229-3239
    • Honeycutt, R.J.1    Sobral, B.W.S.2    McClelland, M.3
  • 19
    • 0028946865 scopus 로고
    • Enzyme-linked immunoassay for detection of PCR-amplified DNA of Legionellae in bronchoalveolar fluid
    • Jonas D, Rosenbaum A, Weyrich S, Bhakdi S, 1995. Enzyme-linked immunoassay for detection of PCR-amplified DNA of Legionellae in bronchoalveolar fluid. Journal of Clinical Microbiology 33, 1247-52.
    • (1995) Journal of Clinical Microbiology , vol.33 , pp. 1247-1252
    • Jonas, D.1    Rosenbaum, A.2    Weyrich, S.3    Bhakdi, S.4
  • 20
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M, eds. Chichester, UK: John Wiley & Sons Ltd
    • Lane DJ, 1991. 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, eds. Nucleic Acid Techniques in Bacterial Systematics. Chichester, UK: John Wiley & Sons Ltd, 115-75.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 21
    • 0028267828 scopus 로고
    • Detection and strain identification of Actinobacillus actinomycetemcomitans by nested PCR
    • Leys EJ, Griffen AL, Strong SJ, Fuerst PA, 1994. Detection and strain identification of Actinobacillus actinomycetemcomitans by nested PCR. Journal of Clinical Microbiology 32, 1288-94.
    • (1994) Journal of Clinical Microbiology , vol.32 , pp. 1288-1294
    • Leys, E.J.1    Griffen, A.L.2    Strong, S.J.3    Fuerst, P.A.4
  • 22
    • 0028864244 scopus 로고
    • Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria
    • Li X, De Boer SH, 1995a. Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria. Canadian Journal of Microbiology 41, 925-9.
    • (1995) Canadian Journal of Microbiology , vol.41 , pp. 925-929
    • Li, X.1    De Boer, S.H.2
  • 23
    • 0028795166 scopus 로고
    • Selection of polymerase chain reaction primers from an RNA intergenic spacer region for specific detection of Clavibacter michiganensis subsp. sepedonicus
    • Li X, De Boer SH, 1995b. Selection of polymerase chain reaction primers from an RNA intergenic spacer region for specific detection of Clavibacter michiganensis subsp. sepedonicus. Phytopathology 85, 837-42.
    • (1995) Phytopathology , vol.85 , pp. 837-842
    • Li, X.1    De Boer, S.H.2
  • 24
    • 0026029211 scopus 로고
    • Complete nucleotide sequence of the Mycobacterium leprae 23S and 5S rRNA genes plus flanking regions and their potential in designing diagnostic oligonucleotide probes
    • Liesack W, Sela S, Bercovier H, Pitulle C, Stackebrandt E, 1991. Complete nucleotide sequence of the Mycobacterium leprae 23S and 5S rRNA genes plus flanking regions and their potential in designing diagnostic oligonucleotide probes. FEBS Letters 281, 114-8.
    • (1991) FEBS Letters , vol.281 , pp. 114-118
    • Liesack, W.1    Sela, S.2    Bercovier, H.3    Pitulle, C.4    Stackebrandt, E.5
  • 25
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak KJ, Flood SJA, Marmaro J, Giusti W, Deetz K, 1995. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods and Applications 4, 357-62.
    • (1995) PCR Methods and Applications , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.A.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 27
    • 0026603595 scopus 로고
    • Analysis of a ribosomal RNA operon in the actinomycete Frankia
    • Normand P, Cournoyer B, Simonet P, Nazaret S, 1992. Analysis of a ribosomal RNA operon in the actinomycete Frankia. Gene 111, 119-24.
    • (1992) Gene , vol.111 , pp. 119-124
    • Normand, P.1    Cournoyer, B.2    Simonet, P.3    Nazaret, S.4
  • 28
    • 0031030051 scopus 로고    scopus 로고
    • A polymerase chain reaction protocol for the detection of Xanthomonas albilineans, the causal agent of sugarcane leaf scald disease
    • Pan Y-B, Grisham MP, Burner DM, 1997. A polymerase chain reaction protocol for the detection of Xanthomonas albilineans, the causal agent of sugarcane leaf scald disease. Plant Disease 81, 189-94.
    • (1997) Plant Disease , vol.81 , pp. 189-194
    • Pan, Y.-B.1    Grisham, M.P.2    Burner, D.M.3
  • 31
    • 0025833824 scopus 로고
    • Identification and characterization of the ribosomal RNA-encoding genes in Clavibacter xyli subsp. cynodontis
    • Sathyamoorthy M, Alcorn SC, Lohnas GL, Anderson JJ, Uratani BB, 1991. Identification and characterization of the ribosomal RNA-encoding genes in Clavibacter xyli subsp. cynodontis. Gene 108, 47-53.
    • (1991) Gene , vol.108 , pp. 47-53
    • Sathyamoorthy, M.1    Alcorn, S.C.2    Lohnas, G.L.3    Anderson, J.J.4    Uratani, B.B.5
  • 32
    • 0029843290 scopus 로고    scopus 로고
    • Detection of potato leafroll virus in dormant potato tubers by immunocapture and a fluorogenic 5′ nuclease RT-PCR assay
    • Schoen CD, Knorr D, Leone G, 1996. Detection of potato leafroll virus in dormant potato tubers by immunocapture and a fluorogenic 5′ nuclease RT-PCR assay, Phytopathology 86, 993-9.
    • (1996) Phytopathology , vol.86 , pp. 993-999
    • Schoen, C.D.1    Knorr, D.2    Leone, G.3
  • 33
    • 0028052416 scopus 로고
    • Detection of sugarcane mosaic virus and fiji disease virus in diseased sugarcane using the polymerase chain reaction
    • Smith G, Van de Velde R, 1994. Detection of sugarcane mosaic virus and fiji disease virus in diseased sugarcane using the polymerase chain reaction. Plant Disease 78, 557-61.
    • (1994) Plant Disease , vol.78 , pp. 557-561
    • Smith, G.1    Van de Velde, R.2
  • 34
    • 0028824324 scopus 로고
    • Chemiluminescent and colorimetric enzymatic assays for the detection of PCR-amplified Salmonella sp. products in microplates
    • Soumet C, Ermel G, Boutin P, Bescher E, Colin P, 1995. Chemiluminescent and colorimetric enzymatic assays for the detection of PCR-amplified Salmonella sp. products in microplates. BioTechniques 19, 792-6.
    • (1995) BioTechniques , vol.19 , pp. 792-796
    • Soumet, C.1    Ermel, G.2    Boutin, P.3    Bescher, E.4    Colin, P.5
  • 35
    • 0012864065 scopus 로고
    • Ratoon stunting disease
    • Martin JP, Abbott EV, Hughes CG, eds. Amsterdam, Netherlands: Elsevier
    • Sreindl DRL, 1961. Ratoon stunting disease. In: Martin JP, Abbott EV, Hughes CG, eds. Sugar-Cane Diseases of the World, vol 1. Amsterdam, Netherlands: Elsevier, 433-59.
    • (1961) Sugar-Cane Diseases of the World , vol.1 , pp. 433-459
    • Sreindl, D.R.L.1
  • 37
    • 0026680676 scopus 로고
    • Amplification of the 16S-23S spacer region in rRNA operons of Mycoplasmas by the polymerase chain reaction
    • Uemori T, Asada K, Kato I, Harasawa R, 1992. Amplification of the 16S-23S spacer region in rRNA operons of Mycoplasmas by the polymerase chain reaction. Systematic and Applied Microbiology 15, 181-6.
    • (1992) Systematic and Applied Microbiology , vol.15 , pp. 181-186
    • Uemori, T.1    Asada, K.2    Kato, I.3    Harasawa, R.4
  • 38
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG, 1997. Inhibition and facilitation of nucleic acid amplification. Applied and Environmental Microbiology 63, 3741-51.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 40
    • 0027510307 scopus 로고
    • Rathayibacter gen. nov., including the species Rathayibacter rathayi comb, nov., Rathayibacter tritici comb, nov., Rathayibacter iranicus comb, nov., and six strains from annual grasses
    • Zgurskaya HI, Evtushenko LI, Akimov VN, Kalakoutskii LV, 1993. Rathayibacter gen. nov., including the species Rathayibacter rathayi comb, nov., Rathayibacter tritici comb, nov., Rathayibacter iranicus comb, nov., and six strains from annual grasses. International Journal of Systematic Bacteriology 43, 143-9.
    • (1993) International Journal of Systematic Bacteriology , vol.43 , pp. 143-149
    • Zgurskaya, H.I.1    Evtushenko, L.I.2    Akimov, V.N.3    Kalakoutskii, L.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.