메뉴 건너뛰기




Volumn 55, Issue 3, 2006, Pages 471-484

Evolutionary history of vegetative reproduction in Porpidia s.l. (lichen-forming ascomycota)

Author keywords

Ancestral character state reconstructions; Ascomycota, Bayesian inference; Hypothesis testing; Likelihood; MCMC; Porpidia; Reproductive system

Indexed keywords

ARTICLE; ASCOMYCETES; EVOLUTION; GENETICS; LICHENS; PHYSIOLOGY; REPRODUCTION;

EID: 33747348467     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1080/10635150600697465     Document Type: Article
Times cited : (42)

References (50)
  • 1
    • 55449127787 scopus 로고    scopus 로고
    • Predicting functional gene links from phylogenetic-statistical analyses of whole genomes
    • Barker, D., and M. Pagel. 2005. Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput. Biol. 1:24-31.
    • (2005) PLoS Comput. Biol. , vol.1 , pp. 24-31
    • Barker, D.1    Pagel, M.2
  • 2
    • 21844517853 scopus 로고
    • Lichens and lichenicolous fungi of the Queen Charlotte Islands, British Columbia, Canada. 1. Introduction and new records for B.C., Canada and North America
    • Brodo, I. M. 1995. Lichens and lichenicolous fungi of the Queen Charlotte Islands, British Columbia, Canada. 1. Introduction and new records for B.C., Canada and North America. Mycotaxon 56:135-173.
    • (1995) Mycotaxon , vol.56 , pp. 135-173
    • Brodo, I.M.1
  • 3
    • 3042797767 scopus 로고
    • The lichen genus Amygdalaria (Porpidiaceae) in North America
    • Brodo, I. M., and H. Hertel. 1987. The lichen genus Amygdalaria (Porpidiaceae) in North America. Herzogia 7:493-521.
    • (1987) Herzogia , vol.7 , pp. 493-521
    • Brodo, I.M.1    Hertel, H.2
  • 5
    • 3042786372 scopus 로고    scopus 로고
    • Resolving evolutionary relationships in the lichen-forming genus Porpidia and related allies (Porpidiaceae, Ascomycota)
    • DOI 10.1016/j.ympev.2003.11.012, PII S105579030300424X
    • Buschbom, J., and G. Mueller. 2004. Resolving evolutionary relationships in the lichen-forming genus Porpidia and related allies (Porpidiaceae, Ascomycota). Mol. Phylogenet. Evol. 32:66-82. (Pubitemid 38851932)
    • (2004) Molecular Phylogenetics and Evolution , vol.32 , Issue.1 , pp. 66-82
    • Buschbom, J.1    Mueller, G.2
  • 6
    • 33244493158 scopus 로고    scopus 로고
    • Testing "species pair" hypotheses: Evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes
    • DOI 10.1093/molbev/msj063
    • Buschbom, J., and G. Mueller. 2006. Testing "species pair" hypotheses: evolutionary processes in the lichen-forming species complex Porpidia flavocoerulescens and Porpidia melinodes. Mol. Biol. Evol. 23:574-586. (Pubitemid 43278269)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.3 , pp. 574-586
    • Buschbom, J.1    Mueller, G.M.2
  • 7
    • 0032076689 scopus 로고    scopus 로고
    • Two new species of the lichen genus Immersaria (Porpidiaceae)
    • DOI 10.1006/lich.1997.0133
    • Calatayud, V., and G. Rambold. 1998. Two new species of the lichen genus Immersaria (Porpidiaceae). Lichenologist 30:231-244. (Pubitemid 28305687)
    • (1998) Lichenologist , vol.30 , Issue.3 , pp. 231-244
    • Calatayud, V.1    Rambold, G.2
  • 8
    • 0031880429 scopus 로고    scopus 로고
    • Reconstructing ancestral character states: A critical reappraisal
    • DOI 10.1016/S0169-5347(98)01382-2, PII S0169534798013822
    • Cunningham, C. W., K. E. Omland, and T. H. Oakley. 1998. Reconstructing ancestral character states: a critical reappraisal. Trends Ecol. Evol. 13:361-366. (Pubitemid 28385525)
    • (1998) Trends in Ecology and Evolution , vol.13 , Issue.9 , pp. 361-366
    • Cunningham, C.W.1    Omland, K.E.2    Oakley, T.H.3
  • 9
    • 6544225409 scopus 로고    scopus 로고
    • Recombination and sex, is it the same?
    • June 12, 1998
    • Damgaard, C. 1998. Recombination and sex, is it the same? Mycoinfo (http://www.mycoinfo.com) June 12, 1998.
    • (1998) Mycoinfo
    • Damgaard, C.1
  • 10
    • 0001703997 scopus 로고
    • Die Soredien und Isidien der Flechten
    • Du Rietz, G. E. 1924. Die Soredien und Isidien der Flechten. Svensk Botanisk Tidskrift 18:371-396.
    • (1924) Svensk Botanisk Tidskrift , vol.18 , pp. 371-396
    • Du Rietz, G.E.1
  • 11
    • 0004128472 scopus 로고
    • Expanded edition. Cambridge University Press, Cambridge, Great Britain
    • Edwards, A. W. F. 1992. Likelihood. Expanded edition. Cambridge University Press, Cambridge, Great Britain.
    • (1992) Likelihood
    • Edwards, A.W.F.1
  • 12
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts
    • Felsenstein, J. 2004. Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts.
    • (2004) Inferring Phylogenies
    • Felsenstein, J.1
  • 14
    • 3042718425 scopus 로고
    • The lichen genus Porpidia (Porpidiaceae) in North America
    • Gowan, S. P. 1989. The lichen genus Porpidia (Porpidiaceae) in North America. Bryologist 92:25-59.
    • (1989) Bryologist , vol.92 , pp. 25-59
    • Gowan, S.P.1
  • 15
    • 3042754587 scopus 로고
    • Status of the lichen genus Porpidia in eastern Fennoscandinavia
    • Gowan, S. P., and T. Ahti. 1993. Status of the lichen genus Porpidia in eastern Fennoscandinavia. Ann. Bot. Fennici 92:25-59.
    • (1993) Ann. Bot. Fennici , vol.92 , pp. 25-59
    • Gowan, S.P.1    Ahti, T.2
  • 16
    • 0024657679 scopus 로고
    • Phylogeny of some Fusarium species, as determined by large-subunit rRNA sequence comparison
    • Guadet, J., J. Julien, J. F. Lafay, and Y. Brygoo. 1989. Phylogeny of some Fusarium species, as determined by large-subunit rRNA sequence comparison. Mol. Biol. Evol. 6:227-242.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 227-242
    • Guadet, J.1    Julien, J.2    Lafay, J.F.3    Brygoo, Y.4
  • 17
    • 0002676124 scopus 로고
    • Revision einiger calciphiler Formenkreise der Flechtengattung Lecidea
    • Hertel, H. 1967. Revision einiger calciphiler Formenkreise der Flechtengattung Lecidea. Beiheft zur Nova Hedwigia 24:1-174.
    • (1967) Beiheft Zur Nova Hedwigia , vol.24 , pp. 1-174
    • Hertel, H.1
  • 18
    • 0000023951 scopus 로고
    • Über saxicole, lecideoide Flechten der Subantarktis
    • (F. Oberwinkler, ed.). J. Cramer, Berlin, Stuttgart
    • Hertel, H. 1984. Über saxicole, lecideoide Flechten der Subantarktis. Pages 399-99 in Festschrift J. Poelt (F. Oberwinkler, ed.). J. Cramer, Berlin, Stuttgart.
    • (1984) Festschrift J. Poelt , pp. 399-399
    • Hertel, H.1
  • 19
    • 0142007706 scopus 로고
    • Schlüssel für die Arten der Flechtenfamilie Lecideaceae in Europa
    • (V. Wirth, ed.). J. Cramer, Berlin, Stuttgart
    • Hertel, H. 1995. Schlüssel für die Arten der Flechtenfamilie Lecideaceae in Europa. Pages 137-180 in Scripta Lichenologica - Lichenological Papers dedicated to Antonin Vezda (V. Wirth, ed.). J. Cramer, Berlin, Stuttgart.
    • (1995) Scripta Lichenologica - Lichenological Papers Dedicated to Antonin Vezda , pp. 137-180
    • Hertel, H.1
  • 20
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: Traditional and Bayesian approaches
    • DOI 10.1038/nrg1044
    • Holder, M., and P. O. Lewis. 2003. Phylogeny Estimation: Traditional and Bayesian approaches. Nat. Rev. Genet. 4:275-284. (Pubitemid 36389532)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 21
    • 0033886350 scopus 로고    scopus 로고
    • A new statistic for detecting genetic differentiation
    • Hudson, R. R. 2000. A new statistic for detecting genetic differentiation. Genetics 155:2011-2014. (Pubitemid 30626415)
    • (2000) Genetics , vol.155 , Issue.4 , pp. 2011-2014
    • Hudson, R.R.1
  • 22
    • 0035527347 scopus 로고    scopus 로고
    • Empirical and hierarchical Bayesian estimation of ancestral states
    • Huelsenbeck, J. P., and J. P. Bollback. 2001. Empirical and hierarchical Bayesian estimation of ancestral states. Syst. Biol. 50:351-366.
    • (2001) Syst. Biol. , vol.50 , pp. 351-366
    • Huelsenbeck, J.P.1    Bollback, J.P.2
  • 23
    • 0036005522 scopus 로고    scopus 로고
    • Geographic origin of human mitochondrial DNA: Accommodating phylogenetic uncertainty and model comparison
    • DOI 10.1080/106351502753475934
    • Huelsenbeck, J. P., and N. S. Imennov. 2002. Geographic origin of human mitochondrial DNA: Accomodating phylogenetic uncertainty and model comparison. Syst. Biol. 51:155-165. (Pubitemid 35180612)
    • (2002) Systematic Biology , vol.51 , Issue.1 , pp. 155-165
    • Huelsenbeck, J.P.1    Imennov, N.S.2
  • 24
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • DOI 10.1080/10635150290102366
    • Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51:673-688. (Pubitemid 35294801)
    • (2002) Systematic Biology , vol.51 , Issue.5 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 25
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes. Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755. (Pubitemid 32851390)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 26
    • 1242296549 scopus 로고    scopus 로고
    • Model selection in ecology and evolution
    • DOI 10.1016/j.tree.2003.10.013
    • Johnson, J. B., and K. S. Omland. 2004. Model selection in ecology and evolution. Trends Ecol. Evol. 19:101-108. (Pubitemid 38105895)
    • (2004) Trends in Ecology and Evolution , vol.19 , Issue.2 , pp. 101-108
    • Johnson, J.B.1    Omland, K.S.2
  • 28
    • 0035731840 scopus 로고    scopus 로고
    • A gene genealogical approach to recognize phylogenetic species boundaries in the lichenized fungus Letharia
    • Kroken, S., and J. W. Taylor. 2001. A gene genealogical approach to recognize phylogenetic species boundaries in the lichenized fungus Letharia. Mycologia 93:38-53. (Pubitemid 34290149)
    • (2001) Mycologia , vol.93 , Issue.1 , pp. 38-53
    • Kroken, S.1    Taylor, J.W.2
  • 29
    • 1542424557 scopus 로고
    • Sexual reproduction
    • (M. E. J. Hale, ed.). London Academic Press, New York
    • Letrouit-Galinou, M. A. 1973. Sexual reproduction. Pages 59-90 in The Lichens (M. E. J. Hale, ed.). London Academic Press, New York.
    • (1973) The Lichens , pp. 59-90
    • Letrouit-Galinou, M.A.1
  • 30
    • 0035145155 scopus 로고    scopus 로고
    • Phylogenetic systematics turns over a new leaf
    • DOI 10.1016/S0169-5347(00)02025-5, PII S0169534700020255
    • Lewis, P. O. 2001. Phylogenetic systematics turns over a new leaf. Trends Ecol. Evol. 16:30-37. (Pubitemid 32103336)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.1 , pp. 30-37
    • Lewis, P.O.1
  • 31
    • 0001079494 scopus 로고
    • Phylogenetic analysis of two ribosomal DNA regions indicates multiple independent losses of a sexual Talaromyces state among asexual Penicillium species in subgenus Biverticillium
    • LoBuglio, K. R, J. I. Pitt, and J. W. Taylor. 1993. Phylogenetic analysis of two ribosomal DNA regions indicates multiple independent losses of a sexual Talaromyces state among asexual Penicillium species in subgenus Biverticillium. Mycologia 85:592-604.
    • (1993) Mycologia , vol.85 , pp. 592-604
    • LoBuglio, K.R.1    Pitt, J.I.2    Taylor, J.W.3
  • 32
    • 0000009039 scopus 로고    scopus 로고
    • The family Physciaceae in Fennoscandia: Phylogeny inferred from ITS sequences
    • Lohtander, K., M. Kallersjo, R. Moberg, and A. Tehler. 2000. The family Physciaceae in Fennoscandia: phylogeny inferred from ITS sequences. Mycologia 92:728-735.
    • (2000) Mycologia , vol.92 , pp. 728-735
    • Lohtander, K.1    Kallersjo, M.2    Moberg, R.3    Tehler, A.4
  • 33
    • 0035927638 scopus 로고    scopus 로고
    • Major fungal lineages are derived from lichen symbiotic ancestors
    • DOI 10.1038/35082053
    • Lutzoni, F. M., M. Pagel, and V. Reeb. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937-940. (Pubitemid 32601487)
    • (2001) Nature , vol.411 , Issue.6840 , pp. 937-940
    • Lutzoni, F.1    Pagel, M.2    Reeb, V.3
  • 34
    • 0003911165 scopus 로고    scopus 로고
    • version 4.0. Sinauer Associates, Sunderland, Massachusetts
    • Maddison, W. P., and D. R. Maddison. 2000. MacClade, version 4.0. Sinauer Associates, Sunderland, Massachusetts.
    • (2000) MacClade
    • Maddison, W.P.1    Maddison, D.R.2
  • 35
    • 0036804707 scopus 로고    scopus 로고
    • An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference
    • DOI 10.1080/10635150290102401
    • Miller, R. E., T. R. Buckley, and P. S. Manos. 2002. An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference. Syst. Biol. 51:740-753. (Pubitemid 35294806)
    • (2002) Systematic Biology , vol.51 , Issue.5 , pp. 740-753
    • Miller, R.E.1    Buckley, T.R.2    Manos, P.S.3
  • 36
    • 30544450456 scopus 로고    scopus 로고
    • Maximum likelihood models of trait evolution
    • Oakley, T. H. 2003. Maximum likelihood models of trait evolution. Comments on Theoretical Biology 8:1-17.
    • (2003) Comments on Theoretical Biology , vol.8 , pp. 1-17
    • Oakley, T.H.1
  • 37
    • 0028097770 scopus 로고
    • Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters
    • Pagel, M. 1994. Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc. R. Soc. Lond. B Biol. Sci. 255:37-45. (Pubitemid 24044170)
    • (1994) Proceedings of the Royal Society B: Biological Sciences , vol.255 , Issue.1342 , pp. 37-45
    • Pagel, M.1
  • 38
    • 0033422611 scopus 로고    scopus 로고
    • The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies
    • Pagel, M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Syst. Biol. 48:612-623.
    • (1999) Syst. Biol. , vol.48 , pp. 612-623
    • Pagel, M.1
  • 39
    • 0000176247 scopus 로고    scopus 로고
    • Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation
    • (M. Lassig and A. Valleriani, eds.). Springer Verlag, Berlin
    • Pagel, M., and F. M. Lutzoni. 2002. Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation. Pages 148-161 in Biological evolution and statistical physiscs (M. Lassig and A. Valleriani, eds.). Springer Verlag, Berlin.
    • (2002) Biological Evolution and Statistical Physiscs , pp. 148-161
    • Pagel, M.1    Lutzoni, F.M.2
  • 40
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • Pagel, M., A. Meade, and D. Barker. 2004. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 53:637-684.
    • (2004) Syst. Biol. , vol.53 , pp. 637-684
    • Pagel, M.1    Meade, A.2    Barker, D.3
  • 41
    • 84864824392 scopus 로고
    • Das Konzept der Artenpaare bei den Flechten
    • Poelt, J. 1970. Das Konzept der Artenpaare bei den Flechten. Bot. Notiser 125:77-81.
    • (1970) Bot. Notiser , vol.125 , pp. 77-81
    • Poelt, J.1
  • 42
    • 0003189473 scopus 로고
    • Die taxonomische Behandlung von Artenpaaren bei den Flechten
    • Poelt, J. 1972. Die taxonomische Behandlung von Artenpaaren bei den Flechten. Bot. Notiser 125:77-81.
    • (1972) Bot. Notiser , vol.125 , pp. 77-81
    • Poelt, J.1
  • 43
    • 0033413219 scopus 로고    scopus 로고
    • Inferring rates of change in flower symmetry in asterid angiosperms
    • Ree, R. H., and M. J. Donoghue. 1999. Inferring rates of change in flower symmetry in asterid angiosperms. Syst. Biol. 44:633-641. (Pubitemid 129479569)
    • (1999) Systematic Biology , vol.48 , Issue.3 , pp. 633-641
    • Ree, R.H.1    Donoghue, M.J.2
  • 44
    • 0000179255 scopus 로고
    • Molecular systematics of the Hypocreales: A teleomorph gene phylogeny and the status of their anamorphs
    • Rehner, S. A., and G. J. Samuels. 1995. Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs. Cana. J. Bot. 73:S816-S823.
    • (1995) Cana. J. Bot. , vol.73
    • Rehner, S.A.1    Samuels, G.J.2
  • 45
    • 0033432230 scopus 로고    scopus 로고
    • The role of subjectivity in reconstructing ancestral character states: A Bayesian approach to unknown rates, states, and transformation asymmetries
    • Schultz, T. R., and G. A. Churchill. 1999. The role of subjectivity in reconstructing ancestral character states: A Bayesian approach to unknown rates, states, and transformation asymmetries. Syst. Biol. 44:651-664. (Pubitemid 129479571)
    • (1999) Systematic Biology , vol.48 , Issue.3 , pp. 651-664
    • Schultz, T.R.1    Churchill, G.A.2
  • 46
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich, J., and e. al. 2002. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 12:1611-1618.
    • (2002) Genome Res. , vol.12 , pp. 1611-1618
    • Stajich, J.1
  • 47
    • 14844360185 scopus 로고    scopus 로고
    • The evolution of generalization? Parasitoid flies and the perils of inferring host range evolution from phylogenies
    • Stireman, J. O. I. 2005. The evolution of generalization? Parasitoid flies and the perils of inferring host range evolution from phylogenies. J. Evol. Biol. 18:325-336.
    • (2005) J. Evol. Biol. , vol.18 , pp. 325-336
    • Stireman, J.O.I.1
  • 49
    • 12044259392 scopus 로고
    • Fungal model organisms: Phylogenetics of Saccharomyces, Aspergillus, and Neurospora
    • Taylor, J. W., B. H. Bowman, M. L. Berbee, and T. J. White. 1993. Fungal model organisms: Phylogenetics of Saccharomyces, Aspergillus, and Neurospora. Syst. Biol. 42:440-457.
    • (1993) Syst. Biol. , vol.42 , pp. 440-457
    • Taylor, J.W.1    Bowman, B.H.2    Berbee, M.L.3    White, T.J.4
  • 50
    • 0001063256 scopus 로고
    • The species pair concept in lichenology
    • Tehler, A. 1982. The species pair concept in lichenology. Taxon 31:708-714.
    • (1982) Taxon , vol.31 , pp. 708-714
    • Tehler, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.