Method for estimating the isotopic distributions of metabolically labeled proteins by MALDI-TOFMS: Application to NMR samples

Analytical Chemistry

Volumn 78, Issue 15, 2006, Pages 5419-5423

  Choudhary, Kajal ^a   Spicer, Victor L ^a   Donald, Lynda J ^a   Duckworth, Harry W ^a   Ens, Werner ^a   Loewen, Peter C ^a   Standings, Kenneth G ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC COMPOSITION; MASS SPECTRA; PEPTIDE MIXTURES; TRYPTIC PEPTIDES;

DEPOSITION; IONIZATION; LASER APPLICATIONS; MASS SPECTROMETRY; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

PROTEINS;

AMINO ACID; CITRATE SYNTHASE; ION; ISOTOPE; NITROGEN 15; PROTEIN; TRYPSIN;

ARTICLE; ATOM; COMPARATIVE STUDY; CONTROLLED STUDY; ESCHERICHIA COLI; ISOTOPE LABELING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; OBSERVATIONAL STUDY; PROTEIN DEGRADATION; PROTEIN METABOLISM; RADIOISOTOPE DISTRIBUTION; SIMULATION;

CITRATE (SI)-SYNTHASE; ESCHERICHIA COLI; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN ISOTOPES; PEPTIDE FRAGMENTS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRYPSIN;

EID: 33746839221     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac060507d     Document Type: Article

References (29)

1. Salzmann, M.; Pervushin, K.; Wider, G.; Senn, H.; Wüthrich, K. J. Am. Chem. Soc. 2000, 122, 7543-7548.
2. Tugarinov, V.; Muhandiram, R.; Ayed, A.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 10025-10035.
3. Fiaux, J.; Bertelsen, E. B.; Horwich, A. L.; Wüthrich, K. J. Biomol. NMR 2004, 29, 289-297.
4. Kay, L. E. J. Magn. Reson. 2005, 173, 193-207.
5. Oda, Y.; Huang, K.; Cross, F. R.; Cowburn, D.; Chait, B. T. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6591-6596.
6. Vogt, J. A.; Hunzinger, C.; Schroer, K.; Hölzer, K.; Bauer, A.; Schrattenholz, A.; Cahill, M. A.; Schillo, S.; Schwall, G.; Stegmann, W.; Albuszies, G. Anal. Chem. 2005, 77, 2034-2042.
7. Beynon, R. J.; Pratt, J. M. Mol. Cell. Proteomics 2005, 4, 857-872.
8. Snijders, A. P.; de Vos, M. G. J.; Wright, P. C. J. Proteome Res. 2005, 4, 578-585.
9. MacCoss, M. J.; Wu, C. C.; Matthews, D. E.; Yates, J. R. III. Anal. Chem. 2005, 77, 7646-7653.
10. Zhao, Q.; Frederick, R.; Seder, K.; Thao, S.; Sreenath, H.; Peterson, F.; Volkman, B. F.; Markley, J. L.; Fox, B. G. J. Struct. Fund. Genomics 2004, 5, 87-93.
11. Marley, J.; Lu, M.; Bracken, C. J. Biomol. NMR 2001, 20, 71-75.
12. Yabuki, T.; Kigawa, T.; Dohmae, N.; Takio, K.; Terada, T.; Ito, Y.; Laue, E. D.; Cooper, J. A.; Kainosho, M.; Yokoyama, S. J. Biomol. NMR 1998, 11, 295-306.
13. Nguyen, N. T.; Maurus, R.; Stokell, D. J.; Ayed, A.; Duckworth, H. W.; Brayer, G. D. Biochemistry 2001, 40, 13177-13187.
14. Stokell, D. J.; Donald, L. J.; Maurus, R.; Nguyen, N. T.; Sadler, G.; Choudhary, K.; Hultin, P. G.; Brayer. G. D.; Duckworth, H. W. J. Biol. Chem. 2003, 37, 35435-35443.
15. Ivancich, A.; Jakopitsch, C.; Auer, M.; Un, S.; Obinger, C. J. Am. Chem. Soc. 2003, 125, 14093-14102.
16. Maniatis, T.; Fritsch, E. F.; Sambrook, J. Molecular Cloning: a laboratory manual; Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, 1982.
17. LeMaster, D. M.; Richards, F. M. Biochemistry 1985, 24, 7263-7268.
18. Duckworth, H. W.; Bell, A. W. Can J. Biochem. 1982, 60, 1143-1147.
19. Anderson, D. H.; Duckworth, H. W. J. Biol. Chem. 1988, 263, 2163-2169.
20. Studier, F. W.; Rosenberg, A. H.; Dünn, J. J.; Dubendorf, J. W. Methods Enzymol. 1990, 185, 60-89.
21. Ramesh, V.; Frederick, R.; Syed, S. E. H.; Gibson, C. F.; Yang, J.-C.; Roberts, G. C. K. Eur. J. Biochem. 1994, 225, 601-608.
22. McIntosh, L. P.; Dahlquist, F. W. Q. Rev. Biophys. 1990, 23, 1-38.
23. Ayed, A.; Duckworth, H. W. Protein Sci. 1999, 8, 1116-1126.
24. Ayed, A.; Krutchinsky, A. N.; Ens, W.; Standing, K. G.; Duckworth, H. W. Rapid Commun. Mass Spectrom. 1998, 12, 339-344.
25. Loboda, A. V.; Krutchinsky, A. N.; Bromirski, M.; Ens, W.; Standing, K. G. Rapid Commun. Mass Spectrom. 2000, 14, 1047-1057.
26. Ens, W.; Standing, K. G. Methods Enzymol. 2005, 402, 49-78.
27. Klein-Seetharaman, J.; Reeves, P. J.; Loewen, M. C.; Getmanova, E. V.; Chung, J.; Schwalbe, H.; Wright, P. E.; Khorana, H. G. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 3452-3457.
28. Fu, L.-H.; Wang, X.-F.; Eyal, Y.; She, Y.-M.; Donald, L. J.; Standing, K. G.; Ben-Hayyim, G. J. Biol. Chem. 2002, 277, 25983-25991.
29. Strub, M. P.; Hoh, F.; Sanchez, J. F.; Strub, J. M.; Bock, A.; Aumelas, A.; Dumas, C. Structure 2003, 11, 1359-1367.