The oxygen transport system in three species of the boreal fish family Gadidae: Molecular phylogeny of hemoglobin

Journal of Biological Chemistry

Volumn 281, Issue 31, 2006, Pages 22073-22084

  Verde, Cinzia ^a   Balestrieri, Marco ^a   De Pascale, Donatella ^a   Pagnozzi, Daniela ^a   Lecointre, Guillaume ^b   Di Prisco, Guido ^a  

^a INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIODIVERSITY; HEMOGLOBIN; MOLECULAR STRUCTURE; OXYGEN; PHYSIOLOGY;

ARCTIC FISH; MOLECULAR PHYLOGENY; OXYGEN TRANSPORT SYSTEMS; PHYSIOLOGICAL DIVERSITIES;

MARINE ENGINEERING;

GLOBIN; HEMOGLOBIN;

AMINO ACID SEQUENCE; ARCTOGADUS GLACIALIS; ARTICLE; ATLANTIC COD; BOHR EFFECT; BOREOGADUS SAIDA; CLONING; ENVIRONMENTAL FACTOR; FISH; MASS SPECTROMETRY; NONHUMAN; OXYGEN AFFINITY; OXYGEN TRANSPORT; PHYLOGENY; PRIORITY JOURNAL; SPECIES COMPARISON; TAIGA;

ACCLIMATIZATION; AMINO ACID SEQUENCE; ANIMALS; ANTARCTIC REGIONS; ARCTIC REGIONS; BIOLOGICAL TRANSPORT; GADIFORMES; HEMOGLOBINS; HYDROGEN-ION CONCENTRATION; MOLECULAR BIOLOGY; MOLECULAR SEQUENCE DATA; OXYGEN; PHYLOGENY; SELECTION (GENETICS);

ACANTHOMORPHA; ARCTOGADUS GLACIALIS; BOREOGADUS; BOREOGADUS SAIDA; GADIDAE; GADUS MORHUA; PISCES;

EID: 33746791934     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M513080200     Document Type: Article

References (59)

1. Brey, T., Klages, M., Dahm, C., Gorny, M., Gutt, J., Hain, S., Stiller, M., Arntz, W. E., Wägele, J. W., and Zimmermann, A. (1994) Nature 368, 297
2. Eastman, J. T. (1997) Cybium 21, 335-352
3. Eastman, J. T. (2005) Polar Biol. 28, 93-107
4. Svetovidov, A. N. (1948) Zool. Inst. Akad. Nauk SSSR 9, 1-222
5. Cohen, D. M. (1984) in Ontogeny and Systematics of Fishes (Moser, H. G., ed) Special Publication No. 1, pp. 259-265, American Society of Ichthyologists and Herpetologists, University of Texas, Austin, TX
6. Jensen, F. B., Fago, A., and Weber, R. E. (1998) in Fish Physiology (Perry, S. F., and Tufts, B. L., eds) Vol. 17, pp. 1-40, Academic Press, San Diego
7. di Prisco, G. (2000) J. Mar. Syst. 27, 253-265
8. Verde, C., Carratore, V., Riccio, A., Tamburrini, M., Parisi, E., and di Prisco, G. (2002) J. Biol. Chem. 277, 36312-36320
9. Andriashev, A. P. (1970) in Antarctic Ecology (Hodgate, M. W., ed) pp. 97-304, Academic Press, London
10. D'Avino, R., and di Prisco, G. (1988) Comp. Biochem. Physiol. B 90, 579-584
11. D'Avino, R., and di Prisco, G. (1989) Eur. J. Biochem. 179, 699-705
12. Tamburrini, M., Brancaccio, A., Ippoliti, R., and di Prisco, G. (1992) Arch. Biochem. Biophys. 292, 295-302
13. Tamburrini, M., D'Avino, R., Fago, A., Carratore, V., Kunzmann, A., and di Prisco, G. (1996) J. Biol. Chem. 271, 23780-23785
14. Tamburrini, M., Romano, M., Carratore, V., Kunzmann, A., Coletta, M., and di Prisco, G. (1998) J. Biol. Chem. 273, 32452-32459
15. Landon, M. (1977) Methods Enzymol. 47, 145-149
16. Brauer, A. W., Oman, C. L., and Margolies, M. N. (1984) Anal. Biochem. 137, 134-142
17. Chomczynski, P., and Sacchi, N. (1987) Anal. Biochem. 162, 156-159
18. Verde, C., De Rosa, M. C., Giordano, D., Mosca, D., de Pascale, D., Raiola, L., Cocca, E., Carratore, V., Giardina, B., and di Prisco, G. (2005) Biochem. J. 15, 297-306
19. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
20. Tamburrini, M., Condò, S. G., di Prisco, G., and Giardina, B. (1994) J. Mol. Biol. 237, 615-621
21. Weber, R. E., Jensen, F. B., and Cox, R. P. (1987) J. Comp. Physiol. B 157, 145-152
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) Nucleic Acids Res. 25, 4876-4882
23. Kumar, S., Tamura, K., Jakobsen, I., and Nei, M. (2000) Molecular Evolutionary Genetic Analysis, Version 2, Pennsylvania State University, University Park and Arizona State University
24. di Prisco, G. (1988) Comp. Biochem. Physiol. B 90, 631-637
25. Marinakis, P., Tamburrini, M., Carratore, V., and di Prisco, G. (2003) Eur. J. Biochem. 270, 3981-3987
26. D'Avino, R., Caruso, C., Tamburrini, M., Romano, M., Rutigliano, B., Polverino de Laureto, P., Camardella, L., Carratore, V., and di Prisco, G. (1994) J. Biol. Chem. 269, 9675-9681
27. Caruso, C., Rutigliano, B., Romano, M., and di Prisco, G. (1991) Biochim. Biophys. Acta 1078, 273-282
28. Verde, C., Howes, B. D., De Rosa, M. C., Raiola, L., Smulevich, G., Williams, R., Giardina, B., Parisi, E., and di Prisco, G. (2004) Protein Sci. 13, 2766-2781
29. Kister, J., Poyart, C., and Edelstein, S. J. (1987) Biophys. J. 52, 527-535
30. Perutz, M. F., and Brunori, M. (1982) Nature 229, 421-426
31. di Prisco, G., Condò, S. G., Tamburrini, M., and Giardina, B. (1991) Trends Biochem. Sci. 16, 471-474
32. Stam, W. T., Beintema, J. J., D'Avino, R., Tamburrini, M., and di Prisco, G. (1997) J. Mol. Evol. 45, 437-445
33. Verde, C., Parisi, E., and di Prisco, G. (2003) J. Mol. Evol. 57, 258-267
34. Chen, L., DeVries, A. L., and Cheng, C.-H. C. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 3817-3822
35. Binotti, I., Giovenco, S., Giardina, B., Antonini, E., Brunori, M., and Wyman, J. (1971) Arch. Biochem. Biophys. 142, 274-280
36. Marinsky, C. A., Houston, A. H., and Murad, A. (1990) Can. J. Zool. 68, 884-888
37. Wells, R. M. G., Ashby, M. D., Duncan, S. J., and Macdonald, J. A. (1980) J. Fish Biol. 17, 517-527
38. Nagai, K., Luisi, B. F., Shih, D. T., Myiazaki, G., Imai, K., Poyart, C., De Young, A., Kwiatkowski, L., Noble, R. W., Lin, S. H., and Yu, N.-T. (1987) Nature 329, 858-860
39. Mathews, H. J., Rohlfs, R. J., Olson, J. S., Tame, J., Renaud, J.-P., and Nagai, K. (1989) J. Biol. Chem. 264, 16573-16583
40. Pechick, I., Ji, X., Fidelis, K., Karavitis, M., Moult, J., Brinigar, W. S., Fronticelli, C., and Gilliland, G. L. (1996) Biochemistry 35, 1935-1945
41. Cupane, A., Leone, M., Militello, V., Friedman, F. K., Koley, A. P., Vasquez, G. B., Brinigar, W. S., Karavitis, M., and Fronticelli, C. (1997) J. Biol. Chem. 272, 26271-26278
42. Mazzarella, L., Bonomi, G., Lubrano, M. C., Merlino, A., Riccio, A., Vergara, A., Vitagliano, L., Verde, C., and di Prisco, G. (2006) Proteins 62, 316-321
43. Ito, N., Komiyama, N. H., and Fermi, G. (1995) J. Mol. Biol. 250, 648-650
44. Edelstein, S. J., McEwen, B., and Gibson, Q. H. (1976) J. Biol. Chem. 251, 7632-7637
45. Monod, J., Wyman, J., and Changeux, J. P. (1965) J. Mol. Biol. 12, 88-118
46. Noble, R. W., Kwiatkowski, L. D., De Young, A., Davis, B. J., Tam, L.-T., and Riggs, A. F. (1986) Biochim. Biophys. Acta 870, 552-563
47. Coletta, M., Ascenzi, P., D'Avino, R., and di Prisco, G. (1996) J. Biol. Chem. 272, 29859-29864
48. Fago, A., Bendixen, E., Malte, H., and Weber, R. E. (1997) J. Biol. Chem. 272, 15628-15635
49. Chen, W. J., Bonillo, C., and Lecointre, G. (2000) Abstracts of the 80th ASIH Meeting, La Paz, Mexico, June 14-20, 2000, p. 389, Universidad Autonoma de Baja California Sur La Paz, Mexico
50. Chen, W. J., Bonillo, C., and Lecointre, G. (2003) Mol. Phylogenet. Evol. 26, 262-288
51. Dettaï, A., and Lecointre, G. (2004) Antarct. Sci. 16, 71-85
52. Dettaï, A., and Lecointre, G. (2005) C. R. Biol. 328, 674-689
53. Miya, M., and Nishida, M. (2000) Mol. Phylogenet. Evol. 17, 437-455
54. Miya, M., Takeshima, H., Endo, H., Ishiguro, N. B., Inoue, J. G., Mukai, T., Satoh, T. P., Yamaguchi, M., Kawaguchi, A., Mabuchi, K., Shirai, S. M., and Nishida, M. (2003) Mol. Phylogenet. Evol. 26, 121-138
55. Smith, W. L., and Wheeler, W. C. (2004) Mol. Phylogenet. Evol. 32, 627-646
56. Imamura, H., and Yabe, M. (2002) Bull. Fish. Sci. Hokkaido Univ. 53, 107-132
57. Nelson, J. S. (1994) Fishes of the World, 3rd Ed., John Wiley and Sons, Inc., New York
58. Weber, R. E. (1990) in Animal Nutrition and Transport Processes. 2. Transport, Respiration and Excretion: Comparative and Environmental Aspects (Truchot, J.-P., and Lahlou, B., eds) pp. 58-75, S. Karger AG, Basel, Switzerland
59. Maruyama, K., Yasumasu, S., and Iuchi, I. (2004) Mech. Dev. 121, 753-769