Illumination is necessary and sufficient to induce histone acetylation independent of transcriptional activity at the C4-specific phosphoenolpyruvate carboxylase promoter in maize

Plant Physiology

Volumn 141, Issue 3, 2006, Pages 1078-1088

  Offermann, Sascha ^a   Danker, Tanja ^a   Dreymüller, Daniela ^a,b   Kalamajka, Rainer ^a,c   Töpsch, Sonja ^a   Weyand, Katrin ^a,d   Peterhänsel, Christoph ^a  

^a RWTH AACHEN UNIVERSITY   (Germany)

^b UNIVERSITY HOSPITAL RWTH AACHEN   (Germany)

^c AALBORG UNIVERSITY   (Denmark)

^d Institut für Zelluläre und Molekulare Botanik   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; CARBOXYLATION; GENES; PROTEINS; RNA;

HISTONE ACETYLATION; NUCLEOSOMES; PHOSPHOENOLPYRUVATE CARBOXYLASE;

CROPS;

FARM CROPS; GENES; PROTEINS;

ZEA MAYS;

EID: 33745945851     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.106.080457     Document Type: Article

References (33)

1. Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C (2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427: 164-167
2. Berger SL (2002) Histone modifications in transcriptional regulation. Curr Opin Genet Dev 12: 142-148
3. Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ III, Gingeras TR, et al (2005) Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120: 169-181
4. Bowler C, Benvenuto G, Laflamme P, Molino D, Probst AV, Tariq M, Paszkowski J (2004) Chromatin techniques for plant cells. Plant J 39: 776-789
5. Chomczynski P (1993) A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques 15: 532-534
6. Chua YL, Brown AP, Gray JC (2001) Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene. Plant Cell 13: 599-612
7. Chua YL, Mott E, Brown APC, MacLean D, Gray JC (2004) Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones. Plant J 37: 789-800
8. Delany AM (2001) Measuring transcription of metalloproteinase genes: nuclear run-off assay vs analysis of hnRNA. Methods Mol Biol 151: 321-333
9. Dion MF, Altschuler SJ, Wu LF, Rando OJ (2005) Genomic characterization reveals a simple histone H4 acetylation code. Proc Natl Acad Sci USA 102: 5501-5506
10. Elferink CJ, Reiners JJ Jr (1996) Quantitative RT-PCR on CYP1A1 heterogeneous nuclear RNA: a surrogate for the in vitro transcription run-on assay. Biotechniques 20: 470-477
11. Flaus A, Owen-Hughes T (2004) Mechanisms for ATP-dependent chromatin remodelling: farewell to the tuna-can octamer? Curr Opin Genet Dev 14: 165-173
12. Hahnen S, Joeris T, Kreuzaler F, Peterhänsel C (2003) Quantification of photosynthetic gene expression in maize C3 and C4 tissues by real-time PCR. Photosynth Res 75: 183-192
13. Jang JC, Sheen J (1994) Sugar sensing in higher plants. Plant Cell 6: 1665-1679
14. Kalamajka R, Hahnen S, Cavalar M, Töpsch S, Weier D, Peterhänsel C (2003) Restriction accessibility in isolated nuclei reveals light-induced chromatin reorganization at the PEPC promoter in maize. Plant Mol Biol 52: 669-678
15. 4 PPCZm1 promoter in transgenic maize. Plant Mol Biol 45: 1-15
16. Kornberg RD, Lorch Y (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98: 285-294
17. Kouskouti A, Talianidis I (2005) Histone modifications defining active genes persist after transcriptional and mitotic inactivation. EMBO J 24: 347-357
18. Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol 3: e328
19. Lusser A, Kolle D, Loidl P (2001) Histone acetylation: lessons from the plant kingdom. Trends Plant Sci 6: 59-65
20. Markelz NH, Costich DE, Brutnell TP (2003) Photomorphogenic responses in maize seedling development. Plant Physiol 133: 1578-1591
21. Nelson T, Langdale JA (1992) Developmental genetics of C4 photosynthesis. Annu Rev Plant Physiol Plant Mol Biol 43: 25-47
22. Ng DWK, Chandrasekharan MB, Hall TC (2005) Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Plant Cell 18: 119-132
23. Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, et al (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527
24. Reed R (2003) Coupling transcription, splicing and mRNA export. Curr Opin Cell Biol 15: 326-331
25. Schubeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, van Leeuwen F, Gottschling DE, O'Neill LP, Turner BM, Delrow J, et al (2004) The histone modification pattern of active genes revealed through genorrie-wide chromatin analysis of a higher eukaryote. Genes Dev 18: 1263-1271
26. Sheen J (1990) Metabolic repression of transcription in higher plants. Plant Cell 2: 1027-1038
27. 4 gene expression. Annu Rev Plant Physiol Plant Mol Biol 50: 187-217
28. Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403: 41-45
29. Struhl K (1999) Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 98: 1-4
30. Sugiharto B, Burnell JN, Sugiyama T (1992) Cytokinin is required to induce the nitrogen-dependent accumulation of mRNAs for phosphoenolpyruvate carboxylase and carbonic anhydrase in detached maize leaves. Plant Physiol 100: 153-156
31. Suzuki I, Cretin C, Omata T, Sugiyama T (1994) Transcriptional and posttranscriptional regulation of nitrogen-responding expression of phosphoenolpyruvate carboxylase gene in maize. Plant Physiol 105: 1223-1229
32. Svaren J, Horz W (1997) Transcription factors vs. nucleosomes: regulation of the PHO5 promoter in yeast. Trends Biochem Sci 22: 93-97
33. Waterborg JH (2002) Dynamics of histone acetylation in vivo: a function for acetylation turnover? Biochem Cell Biol 80: 363-378