-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0021710537
-
The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences
-
Bibb, M.J., Findlay, P.R., and Johnson, M.W. 1984. The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. Gene, 30: 157-166.
-
(1984)
Gene
, vol.30
, pp. 157-166
-
-
Bibb, M.J.1
Findlay, P.R.2
Johnson, M.W.3
-
4
-
-
0027275485
-
The winged-helix DNA-binding motif: Another helix-turn-helix takeoff
-
Brennan, R.G. 1993. The winged-helix DNA-binding motif: another helix-turn-helix takeoff. Cell, 74: 773-776.
-
(1993)
Cell
, vol.74
, pp. 773-776
-
-
Brennan, R.G.1
-
5
-
-
0028593837
-
Gene organization in the dnaA-gyrA region of the Streptomyces coelicolor chromosome
-
Calcutt, M.J. 1994. Gene organization in the dnaA-gyrA region of the Streptomyces coelicolor chromosome. Gene, 151: 23-28.
-
(1994)
Gene
, vol.151
, pp. 23-28
-
-
Calcutt, M.J.1
-
6
-
-
0027930540
-
Bidirectional replication from an internal origin in a linear Streptomyces plasmid
-
Chang, P.C., and Cohen, S.N. 1994. Bidirectional replication from an internal origin in a linear Streptomyces plasmid. Science, 265: 952-954.
-
(1994)
Science
, vol.265
, pp. 952-954
-
-
Chang, P.C.1
Cohen, S.N.2
-
7
-
-
0029847583
-
Streptomyces linear plasmids that contains a phage-like, centrally located, replication origin
-
Chang, P.C., Kim, E.S., and Cohen, S.N. 1996. Streptomyces linear plasmids that contains a phage-like, centrally located, replication origin. Mol. Microbiol. 22: 789-800.
-
(1996)
Mol. Microbiol.
, vol.22
, pp. 789-800
-
-
Chang, P.C.1
Kim, E.S.2
Cohen, S.N.3
-
8
-
-
0026537146
-
Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene
-
Crespi, M., Messens, E., Caplan, A.B., van Montagu, M., and Desomer, J. 1992. Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene. EMBO J. 11: 795-804.
-
(1992)
EMBO J.
, vol.11
, pp. 795-804
-
-
Crespi, M.1
Messens, E.2
Caplan, A.B.3
Van Montagu, M.4
Desomer, J.5
-
9
-
-
0033986532
-
Improved determination method for plasmid copy number using pulsed field gel electrophoresis
-
Fahnert, B., Geuther, R., Hoffmeier, C., and Roth, M. 2000. Improved determination method for plasmid copy number using pulsed field gel electrophoresis. Biotechniques, 28: 26-30.
-
(2000)
Biotechniques
, vol.28
, pp. 26-30
-
-
Fahnert, B.1
Geuther, R.2
Hoffmeier, C.3
Roth, M.4
-
10
-
-
0032030865
-
Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis
-
Fischer, G., Holl, A.C., Volff, J.N., Vandewiele, D., Decaris, B., and Leblond, P. 1998. Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis. Res. Microbiol. 149: 203-210.
-
(1998)
Res. Microbiol.
, vol.149
, pp. 203-210
-
-
Fischer, G.1
Holl, A.C.2
Volff, J.N.3
Vandewiele, D.4
Decaris, B.5
Leblond, P.6
-
11
-
-
0027738415
-
Linear plasmids and chromosomes in bacteria
-
Hinnebusch, J., and Tilly, K. 1993. Linear plasmids and chromosomes in bacteria. Mol. Microbiol. 10: 917-922.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 917-922
-
-
Hinnebusch, J.1
Tilly, K.2
-
12
-
-
0033804115
-
Cloning and analysis of the replication origin and the telomeres of the large linear plasmid pSLA2-L in Streptomyces rochei
-
Hiratsu, K., Mochizuki, S., and Kinashi, H. 2000. Cloning and analysis of the replication origin and the telomeres of the large linear plasmid pSLA2-L in Streptomyces rochei. Mol. Gen. Genet. 263: 1015-1021.
-
(2000)
Mol. Gen. Genet.
, vol.263
, pp. 1015-1021
-
-
Hiratsu, K.1
Mochizuki, S.2
Kinashi, H.3
-
13
-
-
0020072055
-
Analysis of linear plasmids isolated from Streptomyces: Association of protein with the ends of the plasmid DNA
-
Hirochika, H., and Sakaguchi, K. 1982. Analysis of linear plasmids isolated from Streptomyces: association of protein with the ends of the plasmid DNA. Plasmid, 7: 59-65.
-
(1982)
Plasmid
, vol.7
, pp. 59-65
-
-
Hirochika, H.1
Sakaguchi, K.2
-
14
-
-
0037346363
-
Linear plasmid SLP2 of Streptomyces lividans is a composite replicon
-
Huang, C.H., Chen, C.Y., Tsai, H.H., Chen, C., Lin, Y.S., and Chen, C.W. 2003. Linear plasmid SLP2 of Streptomyces lividans is a composite replicon. Mol. Microbiol. 47: 1563-1576.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1563-1576
-
-
Huang, C.H.1
Chen, C.Y.2
Tsai, H.H.3
Chen, C.4
Lin, Y.S.5
Chen, C.W.6
-
15
-
-
0032942468
-
FramePlot: A new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content
-
Ishikawa, J., and Hotta, K. 1999. FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content. FEMS Microbiol. Lett. 174: 251-253.
-
(1999)
FEMS Microbiol. Lett.
, vol.174
, pp. 251-253
-
-
Ishikawa, J.1
Hotta, K.2
-
16
-
-
0027496658
-
The giant linear plasmid pHG207 from Rhodococcus sp. encoding hydrogen autotrophy: Characterization of the plasmid and its termini
-
Kalkus, J., Dorrie, C., Fischer, D., Reh, M., and Schlegel, H.G. 1993. The giant linear plasmid pHG207 from Rhodococcus sp. encoding hydrogen autotrophy: characterization of the plasmid and its termini. J. Gen. Microbiol. 139: 2055-2065.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 2055-2065
-
-
Kalkus, J.1
Dorrie, C.2
Fischer, D.3
Reh, M.4
Schlegel, H.G.5
-
17
-
-
0023945015
-
Isolation and characterization of a linear DNA plasmid from Streptomyces clavuligerus
-
Keen, C.L, Mendelovitz, S., Cohen, G., Aharonowitz, Y., and Roy, K.L. 1988. Isolation and characterization of a linear DNA plasmid from Streptomyces clavuligerus. Mol. Gen. Genet. 212: 172-176.
-
(1988)
Mol. Gen. Genet.
, vol.212
, pp. 172-176
-
-
Keen, C.L.1
Mendelovitz, S.2
Cohen, G.3
Aharonowitz, Y.4
Roy, K.L.5
-
18
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley, L.A., MacCallum, R.M., and Sternberg, M.J. 2000. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299: 499-520.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
19
-
-
0003869903
-
-
The John Innes Foundation, Norwich, England
-
Kieser, T., Bibb, M.J., Buttner, M.J., Chater, K.P., and Hopwood, D.A. 2000. Practical Streptomyces genetics. The John Innes Foundation, Norwich, England:.
-
(2000)
Practical Streptomyces Genetics
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.P.4
Hopwood, D.A.5
-
20
-
-
0023251897
-
Giant linear plasmids in Streptomyces which code for antibiotic biosynthesis genes
-
Kinashi, H., Shimaji, M., and Sakai, A. 1987. Giant linear plasmids in Streptomyces which code for antibiotic biosynthesis genes. Nature, 328: 454-456.
-
(1987)
Nature
, vol.328
, pp. 454-456
-
-
Kinashi, H.1
Shimaji, M.2
Sakai, A.3
-
21
-
-
17744407606
-
Structural elements of the Streptomyces oriC region and their interactions with the DnaA protein
-
Jakimowicz, D., Majka, J., Messer, W., Speck, C., Fernandez, M., Martin, M.C., Sanchez, J., Schauwecker, F., Keller, U., Schrempf, H., and Zakrzewska-Czerwinska, J. 1998. Structural elements of the Streptomyces oriC region and their interactions with the DnaA protein. Microbiology, 144: 1281-1290.
-
(1998)
Microbiology
, vol.144
, pp. 1281-1290
-
-
Jakimowicz, D.1
Majka, J.2
Messer, W.3
Speck, C.4
Fernandez, M.5
Martin, M.C.6
Sanchez, J.7
Schauwecker, F.8
Keller, U.9
Schrempf, H.10
Zakrzewska-Czerwinska, J.11
-
22
-
-
0022721552
-
The minimal replicon of a streptomycete plasmid produces an ultrahigh level of plasmid DNA
-
Larson, J.L., and Hershberger, C.L. 1986. The minimal replicon of a streptomycete plasmid produces an ultrahigh level of plasmid DNA. Plasmid, 15: 199-209.
-
(1986)
Plasmid
, vol.15
, pp. 199-209
-
-
Larson, J.L.1
Hershberger, C.L.2
-
23
-
-
0028865045
-
Physical map of the linear chromosome of Streptomyces griseus
-
Lezhava, A., Mizukami, T., Kajitani, T., Kameoka, D., Redenbach, M., Shinkawa, H., Nimi, O., and Kinashi, H. 1995. Physical map of the linear chromosome of Streptomyces griseus. J. Bacteriol. 177: 6492-6498.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6492-6498
-
-
Lezhava, A.1
Mizukami, T.2
Kajitani, T.3
Kameoka, D.4
Redenbach, M.5
Shinkawa, H.6
Nimi, O.7
Kinashi, H.8
-
24
-
-
0027751336
-
The chromosomal DNA of Streptomyces lividans 66 is linear
-
Lin, Y.S., Kieser, H.M., Hopwood, D.A., and Chen, C.W. 1993. The chromosomal DNA of Streptomyces lividans 66 is linear. Mol. Microbiol. 10: 923-933.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 923-933
-
-
Lin, Y.S.1
Kieser, H.M.2
Hopwood, D.A.3
Chen, C.W.4
-
25
-
-
0036943630
-
Isolation and characterization of functional replication origin from Streptomyces avermitilis
-
Lu, J., Ma, W., Mao, X., Qin, Z.J., Jiang, W.H., and Jiao, R.S. 2002. Isolation and characterization of functional replication origin from Streptomyces avermitilis. Shengwu Huaxue Shengwu Wuli Xuebao (Shanghai) 34: 712-718.
-
(2002)
Shengwu Huaxue Shengwu Wuli Xuebao (Shanghai)
, vol.34
, pp. 712-718
-
-
Lu, J.1
Ma, W.2
Mao, X.3
Qin, Z.J.4
Jiang, W.H.5
Jiao, R.S.6
-
26
-
-
0028144757
-
Functional evidence that the principal DNA replication origin of the Streptomyces coelicolor chromosome is close to the dnaA-gyrB region
-
Musialowski, M.S., Flett, F., Scott, G.B., Hobbs, G., Smith, C.P., and Oliver, S.G. 1994. Functional evidence that the principal DNA replication origin of the Streptomyces coelicolor chromosome is close to the dnaA-gyrB region. J. Bacteriol. 176: 5123-5125.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5123-5125
-
-
Musialowski, M.S.1
Flett, F.2
Scott, G.B.3
Hobbs, G.4
Smith, C.P.5
Oliver, S.G.6
-
27
-
-
0038644393
-
The large linear plasmid pSLA2-L of Streptomyces rochei has an unusually condensed gene organization for secondary metabolism
-
Mochizuki, S., Hiratsu, K., Suwa, M., Ishii, T, Sugino, F., Yamada, K., and Kinashi, H. 2003. The large linear plasmid pSLA2-L of Streptomyces rochei has an unusually condensed gene organization for secondary metabolism. Mol. Microbiol. 48: 1501-1510.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1501-1510
-
-
Mochizuki, S.1
Hiratsu, K.2
Suwa, M.3
Ishii, T.4
Sugino, F.5
Yamada, K.6
Kinashi, H.7
-
28
-
-
0029135041
-
Giant linear plasmids of beta-lactam antibiotic producing Streptomyces
-
Netolitzky, D.J, Wu, X., Jensen, S.E., and Roy, K.L. 1995. Giant linear plasmids of beta-lactam antibiotic producing Streptomyces. FEMS Microbiol. Lett. 131: 27-34.
-
(1995)
FEMS Microbiol. Lett.
, vol.131
, pp. 27-34
-
-
Netolitzky, D.J.1
Wu, X.2
Jensen, S.E.3
Roy, K.L.4
-
29
-
-
0030934311
-
Characterization of large linear plasmids in mycobacteria
-
Picardeau, M., and Vincent, V. 1997. Characterization of large linear plasmids in mycobacteria. J. Bacteriol. 179: 2753-2756.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2753-2756
-
-
Picardeau, M.1
Vincent, V.2
-
30
-
-
0033968655
-
Analysis of the internal replication region of a mycobacterial linear plasmid
-
Picardeau, M., Le Dantec, C., and Vincent, V. 2000. Analysis of the internal replication region of a mycobacterial linear plasmid. Microbiology, 146: 305-313.
-
(2000)
Microbiology
, vol.146
, pp. 305-313
-
-
Picardeau, M.1
Le Dantec, C.2
Vincent, V.3
-
31
-
-
0031764020
-
Identification of two linear plasmids in the actinomycete Planobispora rosea
-
Polo, S., Guerini, O., Sosio, M., and Deho, G. 1998. Identification of two linear plasmids in the actinomycete Planobispora rosea. Microbiology, 144: 2819-2825.
-
(1998)
Microbiology
, vol.144
, pp. 2819-2825
-
-
Polo, S.1
Guerini, O.2
Sosio, M.3
Deho, G.4
-
32
-
-
0031832970
-
Replication at the telomeres of the Streptomyces linear plasmid pSLA2
-
Qin, Z., and Cohen, S.N. 1998. Replication at the telomeres of the Streptomyces linear plasmid pSLA2. Mol. Microbiol. 28: 893-903.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 893-903
-
-
Qin, Z.1
Cohen, S.N.2
-
33
-
-
0032697384
-
The linear plasmid SCP1 of Streptomyces coelicolor A3(2) possesses a centrally located replication origin and shows significant homology to the transposon Tn4811
-
Redenbach, M., Bibb, M., Gust, B., Seitz, B., and Spychaj, A. 1999. The linear plasmid SCP1 of Streptomyces coelicolor A3(2) possesses a centrally located replication origin and shows significant homology to the transposon Tn4811. Plasmid, 42: 174-185.
-
(1999)
Plasmid
, vol.42
, pp. 174-185
-
-
Redenbach, M.1
Bibb, M.2
Gust, B.3
Seitz, B.4
Spychaj, A.5
-
34
-
-
0025135456
-
Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses
-
Sakaguchi, K. 1990. Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol. Rev. 54: 66-74.
-
(1990)
Microbiol. Rev.
, vol.54
, pp. 66-74
-
-
Sakaguchi, K.1
-
35
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1989)
Molecular Cloning: a Laboratory Manual. 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
0026778390
-
Reconstruction of a Streptomyces linear replicon from separately cloned DNA fragments: Existence of a cryptic origin of circular replication within the linear plasmid
-
Shiffman, D., and Cohen, S.N. 1992. Reconstruction of a Streptomyces linear replicon from separately cloned DNA fragments: existence of a cryptic origin of circular replication within the linear plasmid. Proc. Natl. Acad. Sci. U.S.A. 89: 6129-6133.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 6129-6133
-
-
Shiffman, D.1
Cohen, S.N.2
-
37
-
-
0020058374
-
Temperate phages of Streptomyces venezuelae: Lysogeny and host specificity shown by phages SV1 and SV2
-
Stuttard, C. 1982. Temperate phages of Streptomyces venezuelae: lysogeny and host specificity shown by phages SV1 and SV2. J. Gen. Microbiol. 128: 115-121.
-
(1982)
J. Gen. Microbiol.
, vol.128
, pp. 115-121
-
-
Stuttard, C.1
-
38
-
-
0027392412
-
Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcripts
-
Wu, X., and Roy, K.L. 1993. Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcripts. J. Bacteriol. 175: 37-52.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 37-52
-
-
Wu, X.1
Roy, K.L.2
-
39
-
-
0034450194
-
Initiation of the Streptomyces chromosome replication
-
Zakrzewska-Czerwinska, J., Jakimowicz, D., Majka, J., Messer, W., and Schrempf, H. 2000. Initiation of the Streptomyces chromosome replication. Antonie Leeuwenhoek 78: 211-221.
-
(2000)
Antonie Leeuwenhoek
, vol.78
, pp. 211-221
-
-
Zakrzewska-Czerwinska, J.1
Jakimowicz, D.2
Majka, J.3
Messer, W.4
Schrempf, H.5
|