Binding of tetrakis(pyrazoliumyl)porphyrin and its copper(II) and zinc(II) complexes to poly(dG-dC)2 and poly(dA-dT)2

Journal of Biological Inorganic Chemistry

Volumn 11, Issue 4, 2006, Pages 527-538

  Tjahjono, Daryono H ^a   Kartasasmita, Rahmana E ^a   Nawawi, As'ari ^a   Mima, Shunsuke ^b   Akutsu, Takehiro ^b   Yoshioka, Naoki ^b   Inoue, Hidenari ^b  

^a BANDUNG INSTITUTE OF TECHNOLOGY   (Indonesia)

^b KEIO UNIVERSITY   (Japan)

Author keywords

Binding mode; Cationic porphyrin; DNA binding; Thermodynamics

Indexed keywords

CUPRIC ION; METAL ION; PORPHYRIN; ZINC;

ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; DNA BINDING; ENTHALPY; PRIORITY JOURNAL; TEMPERATURE MEASUREMENT; THERMODYNAMICS; VISCOMETRY;

CIRCULAR DICHROISM; COPPER; INTERCALATING AGENTS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; POLY DA-DT; PORPHYRINS; ZINC COMPOUNDS;

EID: 33745737020     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-006-0105-x     Document Type: Article

References (57)

1. Haq I, Trent JO, Chowdhry BZ, Jenkins TC (1999) J Am Chem Soc 121:1768-1779
2. Hurley LH, Wheelhouse RT, Sun D, Kerwin SM, Salazar M, Fedoroff OY, Han FX, Han H, Izbicka E, Von Hoff DD (2000) Pharmacol Ther 85:141-158
3. Yamashita T, Uno T, Ishikawa Y (2005) Bioorg Med Chem 13:2423-2430
4. Sirish M, Schneider HJ (1999) Chem Commun 907-908
5. Pratviel G, Bernadou J, Meunier B (1996) Met Ions Biol Syst 33:399-426
6. Pogozelski WK, Tullius TD (1998) Chem Rev 98:1089-1107
7. Burrows CJ, Muller JG (1998) Chem Rev 98:1109-1151
8. Armitage B (1998) Chem Rev 98:1171-1200
9. Mauro ED, Saladino R, Tagliatesta P, Sanctis VD, Negri R (1998) J Mol Biol 282:43-57
10. Pasternack RF, Gibbs EJ (1996) Met Ions Biol Syst 33:367-397
11. Mukundan NE, Petho G, Dixon DW, Kim MS, Marzilli LG (1994) Inorg Chem 33:4676-4687
12. Mukundan NE, Petho G, Dixon DW, Marzilli LG(1995) Inorg Chem 34:3677-3687
13. McClure JE, Baudouin L, Mansuy D, Marzilli LG (1997) Biopolymers 42:203-217
14. Guliaev AB, Leontis NB (1999) Biochemistry 38:15425-15437
15. Borissevitch IE, Gandini SCM (1998) J Photochem Photobiol B 43:112-120
16. Dixon DW, Steullet V (1998) J Inorg Biochem 69:25-32
17. Sirish M, Schneider HJ (2000) Chem Commun 23-24
18. Tjahjono DH, Akutsu T, Yoshioka N, Inoue H (1999) Biochim Biophys Acta 1472:333-343
19. Tjahjono DH, Yamamoto T, Ichimoto S, Yoshioka N, Inoue H (2000) J Chem Soc Perkin Trans 1:3077-3081
20. Yamamoto T, Tjahjono DH, Yoshioka N, Inoue H (2004) Bull Chem Soc Jpn 76:1947-1955
21. Barnes NR, Schreiner AF, Finnegan MG, Johnson MK (1998) Biospectroscopy 4:341-352
22. Barnes NR, Schreiner AF, Dolan MA (1998) J Inorg Biochem 72:1-12
23. Barnes NR, Schreiner AF (1998) Inorg Chem 37:6935-6938
24. Barnes NR, Stroud PD, Robinson KE, Horton C, Schreiner AF (1999) Biospectroscopy 5:179-188
25. Lipscomb LA, Zhou FX, Presnell SR, Woo RJ, Peek ME, Plaskon RR, Williams LD (1996) Biochemistry 35:2818-2823
26. Bennett M, Krah A, Wien F, Garman E, Mckenna R, Sanderson M, Neidle S (2000) Proc Natl Acad Sci USA 97:9476-9481
27. Mueller W, Crothers DM (1968) J Mol Biol 35:251-290
28. Schmechel DEV, Crothers DM (1971) Biopolymers 10:465-480
29. Weiss C Jr (1972) J Mol Spectrosc 44:37-80
30. Lyng R, Rodger A, Nordén B (1991) Biopolymers 31:1709-1720
31. Lyng R, Rodger A, Nordén B (1992) Biopolymers 32:1201-1214
32. Lyng R, Härd T, Nordén B (1987) Biopolymers 26:1327-1345
33. Kubista M, Akerman B, Nordén B (1988) J Phys Chem 92:2352-2356
34. Stephens PJ, Suëtaak W, Schatz PN (1966) J Chem Phys 44:4592-4602
35. Buckingham AD, Stephens PJ (1966) Annu Rev Phys Chem 17:399-432
36. Gale R, McCaffery AJ, Rowe MD (1972) J Chem Soc Dalton Trans 596-604
37. Sutherland JC (1978) In: Dolphin D (ed) The porphyrins, vol III. Academic, New York, pp 225-246
38. Pyle AM, Rehmann JP, Meshoyrer R, Kumar CV, Turro NJ, Barton JK (1989) J Am Chem Soc 111:3051-3058
39. Onuki J, Ribas AV, Medeiros MHG, Araki K, Toma HE, Catalani LH, Mascio PD (1996) Photochem Photobiol 63:272-277
40. Mettath S, Munson BR, Pandey RK (1999) Bioconjugate Chem 10:94-102
41. Hypercube (2005) HyperChem release 7.52 Professional. Hypercube, Gainesville
42. Satyanarayana S, Dabrowiak JC, Chaires JB (1992) Biochemistry 31:9319-9324
43. Satyanarayana S, Dabrowiak JC, Chaires JB (1993) Biochemistry 32:2573-2584
44. Bloomfield VA, Crothers DM, Tinoko I Jr (eds) (2000) Nucleic acids: structures, properties, and functions. University Science Books, Sausalito, pp 535-596
45. Banville DL, Marzilli LG, Strickland JA, Wilson WD (1986) Biopolymers 25:1837-1858
46. Strickland JA, Banville DL, Wilson WD, Marzilli LG (1987) Inorg Chem 26:3398-3406
47. Gray TA, Yue KT, Marzilli LG (1991) J Inorg Biochem 41:205-219
48. Marzilli LG, Petho G, Lin M, Kim MS, Dixon DW (1992) J Am Chem Soc 144:7575-7577
49. Gouterman M (1959) J Chem Phys 30:1139-1161
50. Chirvony VS, Galievsky VA, Terekhov SN, Dzhagarov BM, Ermolenkov VV, Turpin PY (1999) Biospectroscopy 5:302-312
51. Fiel RJ, Howard JC, Mark EH, Datta-Gupta N (1979) Nucleic Acids Res 6:3093-3118
52. Ogoshi H, Mizutani T, Hayashi T, Kuroda Y (1999) In: Kadish KM, Smith KM, Guilard R (eds) The porphyrin handbook, vol 6. Academic, San Diego, pp 279-340
53. Chaires JB (1997) Biopolymers 44:201-215
54. Galievsky V, Chirvony V, Ermolenkov V, Kruglik S, Mojzes P, Turpin PY (1997) In: Carmona P, Navarro R, Hernanz A (eds) Spectroscopy of biological molecules: modern trends. Kluwer, Dordrecht, pp 351-354
55. Tunis MJB, Hearst JE (1968) Biopolymers 6:1345-1353
56. Feig M, Pettitt BM (1998) Biopolymers 48:199-209
57. Saenger W (1984) In: Cantor CR (ed) Principles of nucleic acids structure. Springer, Berlin Heidelberg New York, pp 368-384