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Volumn 5, Issue 2, 2006, Pages 373-389

Incongruent evolution of chromosomal size in rice

Author keywords

Chromosomal size evolution; Genome size evolution; Incongruent patterns; Oryza sativa; Polyploidy

Indexed keywords

ARTICLE; CHROMOSOME SIZE; EVOLUTION; GENE DUPLICATION; GENE SEQUENCE; MEDICAL RESEARCH; NUCLEOTIDE SEQUENCE; RICE; SYNTENY;

EID: 33745633849     PISSN: 16765680     EISSN: 16765680     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (5)

References (43)
  • 1
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 0036021693 scopus 로고    scopus 로고
    • Mechanisms and rates of genome expansion and contraction in flowering plants
    • Bennetzen JL (2002). Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica 115: 29-36.
    • (2002) Genetica , vol.115 , pp. 29-36
    • Bennetzen, J.L.1
  • 4
    • 0000637348 scopus 로고    scopus 로고
    • Do plants have a one-way ticket to genomic obesity?
    • Bennetzen JL and Kellogg EA (1997). Do plants have a one-way ticket to genomic obesity? Plant Cell 9: 1509-1514.
    • (1997) Plant Cell , vol.9 , pp. 1509-1514
    • Bennetzen, J.L.1    Kellogg, E.A.2
  • 5
    • 0036021702 scopus 로고    scopus 로고
    • Expansion of genome coding regions by acquisition of new genes
    • Betran E and Long M (2002). Expansion of genome coding regions by acquisition of new genes. Genetica 115: 65-80.
    • (2002) Genetica , vol.115 , pp. 65-80
    • Betran, E.1    Long, M.2
  • 7
    • 0033178886 scopus 로고    scopus 로고
    • Intron-exon structures of eukaryotic model organisms
    • Deutsch M and Long M (1999). Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res. 27: 3219-3228.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3219-3228
    • Deutsch, M.1    Long, M.2
  • 8
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos KM, Brown JKM and Bennetzen JL (2002). Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12: 1075-1079.
    • (2002) Genome Res. , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.M.2    Bennetzen, J.L.3
  • 9
    • 0035431405 scopus 로고    scopus 로고
    • A sense of self: The role of DNA sequence elimination in allopolyploidization
    • Eckardt NA (2001). A sense of self: the role of DNA sequence elimination in allopolyploidization. Plant Cell 13: 1699-1704.
    • (2001) Plant Cell , vol.13 , pp. 1699-1704
    • Eckardt, N.A.1
  • 10
    • 4644353880 scopus 로고    scopus 로고
    • An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
    • Feltus FA, Wan J, Schulze SR, Estill JC, et al. (2004). An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res. 14: 1812-1819.
    • (2004) Genome Res. , vol.14 , pp. 1812-1819
    • Feltus, F.A.1    Wan, J.2    Schulze, S.R.3    Estill, J.C.4
  • 11
    • 0037153127 scopus 로고    scopus 로고
    • Sequence and analysis of rice chromosome 4
    • Feng Q, Zhang Y, Hao P, Wang S, et al. (2002). Sequence and analysis of rice chromosome 4. Nature 420: 316-320.
    • (2002) Nature , vol.420 , pp. 316-320
    • Feng, Q.1    Zhang, Y.2    Hao, P.3    Wang, S.4
  • 12
    • 4444262329 scopus 로고    scopus 로고
    • Incongruent patterns of local and global genome size evolution in cotton
    • Grover CE, Kim H, Wing RA, Paterson AH, et al. (2004). Incongruent patterns of local and global genome size evolution in cotton. Genome Res. 14: 1474-1482.
    • (2004) Genome Res. , vol.14 , pp. 1474-1482
    • Grover, C.E.1    Kim, H.2    Wing, R.A.3    Paterson, A.H.4
  • 13
    • 4143051590 scopus 로고    scopus 로고
    • Ancestral genome duplication in rice
    • Guyot R and Keller B (2004). Ancestral genome duplication in rice. Genome 47: 610-614.
    • (2004) Genome , vol.47 , pp. 610-614
    • Guyot, R.1    Keller, B.2
  • 14
    • 0142059819 scopus 로고    scopus 로고
    • A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes
    • Ilic K, SanMiguel PJ and Bennetzen JL (2003). A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proc. Natl. Acad. Sci. USA 100: 12265-12270.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12265-12270
    • Ilic, K.1    Sanmiguel, P.J.2    Bennetzen, J.L.3
  • 15
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
    • Kent WJ, Baertsch R, Hinrichs A, Miller W, et al. (2003). Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. USA 100: 11484-11489.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4
  • 16
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M and Conery JS (2000). The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 17
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma J and Bennetzen JL (2004). Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 101: 12404-12410.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 18
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • Ma J, Devos KM and Bennetzen JL (2004). Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14: 860-869.
    • (2004) Genome Res. , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 19
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu Y, Masood S, Nishikawa T, Kubo N, et al. (2002). The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics 268: 434-445.
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4
  • 21
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson AH, Bowers JE and Chapman BA (2004). Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl. Acad. Sci. USA 101: 9903-9908.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 22
    • 0036021703 scopus 로고    scopus 로고
    • DNA loss and evolution of genome size in Drosophila
    • Petrov DA (2002). DNA loss and evolution of genome size in Drosophila. Genetica 115: 81-91.
    • (2002) Genetica , vol.115 , pp. 81-91
    • Petrov, D.A.1
  • 23
    • 0029856377 scopus 로고    scopus 로고
    • High intrinsic rate of DNA loss in Drosophila
    • Petrov DA, Lozovskaya ER and Hartl DL (1996). High intrinsic rate of DNA loss in Drosophila. Nature 384: 346-349.
    • (1996) Nature , vol.384 , pp. 346-349
    • Petrov, D.A.1    Lozovskaya, E.R.2    Hartl, D.L.3
  • 24
    • 0034635568 scopus 로고    scopus 로고
    • Evidence for DNA loss as a determinant of genome size
    • Petrov DA, Sangster TA, Johnston JS, Hartl DL, et al. (2000). Evidence for DNA loss as a determinant of genome size. Science 287: 1060-1062.
    • (2000) Science , vol.287 , pp. 1060-1062
    • Petrov, D.A.1    Sangster, T.A.2    Johnston, J.S.3    Hartl, D.L.4
  • 25
    • 85085227829 scopus 로고    scopus 로고
    • Genome sequence of the brown Norway rat yields insights into mammalian evolution
    • Rat Genome Sequencing Project Consortium (2004). Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature 428: 475-476.
    • (2004) Nature , vol.428 , pp. 475-476
  • 26
    • 0038581538 scopus 로고    scopus 로고
    • In-depth view of structure, activity, and evolution of rice chromosome 10
    • Rice Chromosome 10 Sequencing Consortium (2003). In-depth view of structure, activity, and evolution of rice chromosome 10. Science 300: 1566-1569.
    • (2003) Science , vol.300 , pp. 1566-1569
  • 27
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • SanMiguel P and Bennetzen JL (1998). Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82: 37-44.
    • (1998) Ann. Bot. , vol.82 , pp. 37-44
    • SanMiguel, P.1    Bennetzen, J.L.2
  • 28
    • 0013630297 scopus 로고    scopus 로고
    • Nested retrotransposons in the intergenic regions of the maize genome
    • SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, et al. (1996). Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
    • (1996) Science , vol.274 , pp. 765-768
    • SanMiguel, P.1    Tikhonov, A.2    Jin, Y.K.3    Motchoulskaia, N.4
  • 29
    • 0037153190 scopus 로고    scopus 로고
    • The genome sequence and structure of rice chromosome 1
    • Sasaki T, Matsumoto T, Yamamoto K, Sakata K, et al. (2002). The genome sequence and structure of rice chromosome 1. Nature 420: 312-316.
    • (2002) Nature , vol.420 , pp. 312-316
    • Sasaki, T.1    Matsumoto, T.2    Yamamoto, K.3    Sakata, K.4
  • 31
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
    • Shirasu K, Schulman AH, Lahaye T and Schulze-Lefert P (2000). A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res. 10: 908-915.
    • (2000) Genome Res. , vol.10 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 32
    • 0000822856 scopus 로고
    • The genetic organization of chromosomes
    • Thomas Jr CA (1971). The genetic organization of chromosomes. Annu. Rev. Genet. 5: 237-256.
    • (1971) Annu. Rev. Genet. , vol.5 , pp. 237-256
    • Thomas Jr., C.A.1
  • 33
    • 0032718558 scopus 로고    scopus 로고
    • Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
    • Vicient CM, Suoniemi A, Anamthawat-Jonsson K, Tanskanen J, et al. (1999). Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell 11: 1769-1784.
    • (1999) Plant Cell , vol.11 , pp. 1769-1784
    • Vicient, C.M.1    Suoniemi, A.2    Anamthawat-Jonsson, K.3    Tanskanen, J.4
  • 34
    • 0032876994 scopus 로고    scopus 로고
    • Intron-genome size relationship on a large evolutionary scale
    • Vinogradov AE (1999). Intron-genome size relationship on a large evolutionary scale. J. Mol. Evol. 49: 376-384.
    • (1999) J. Mol. Evol. , vol.49 , pp. 376-384
    • Vinogradov, A.E.1
  • 35
    • 0037387430 scopus 로고    scopus 로고
    • Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
    • Vitte C and Panaud O (2003). Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L. Mol. Biol. Evol. 20: 528-540.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 528-540
    • Vitte, C.1    Panaud, O.2
  • 36
    • 14244250895 scopus 로고    scopus 로고
    • Duplication and DNA segmental loss in the rice genome: Implications for diploidization
    • Wang X, Shi X, Hao B, Ge S, et al. (2005). Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol. 165: 937-946.
    • (2005) New Phytol. , vol.165 , pp. 937-946
    • Wang, X.1    Shi, X.2    Hao, B.3    Ge, S.4
  • 37
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF (2000). Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 39
    • 0034944487 scopus 로고    scopus 로고
    • Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution
    • Wicker T, Stein N, Albar L, Feuillet C, et al. (2001). Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J. 26: 307-316.
    • (2001) Plant J. , vol.26 , pp. 307-316
    • Wicker, T.1    Stein, N.2    Albar, L.3    Feuillet, C.4
  • 41
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • Yu J, Wang J, Lin W, Li S, et al. (2005). The genomes of Oryza sativa: a history of duplications. PLoS. Biol. 3: e38.
    • (2005) PLoS. Biol. , vol.3
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4
  • 42
    • 0037250149 scopus 로고    scopus 로고
    • The TIGR rice genome annotation resource: Annotating the rice genome and creating resources for plant biologists
    • Yuan Q, Ouyang S, Liu J, Suh B, et al. (2003). The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Res. 31: 229-233.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 229-233
    • Yuan, Q.1    Ouyang, S.2    Liu, J.3    Suh, B.4
  • 43
    • 13744258122 scopus 로고    scopus 로고
    • Two ancient rounds of polyploidy in rice genome
    • Zhang Y, Xu G, Guo X and Fan L (2005). Two ancient rounds of polyploidy in rice genome. J. Zhejiang Univ. 6B: 87-90.
    • (2005) J. Zhejiang Univ. , vol.6 , pp. 87-90
    • Zhang, Y.1    Xu, G.2    Guo, X.3    Fan, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.