The biological significance of lipid-protein interactions

Journal of Physics Condensed Matter

Volumn 18, Issue 28, 2006, Pages

  Findlay, Heather E ^a   Booth, Paula J ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; LIPIDS; MOLECULAR STRUCTURE; PHYSICAL PROPERTIES;

BILAYER PROPERTIES; INTERACTIONS; MEMBRANE PROTEINS; SYNTHETIC LIPID SYSTEMS;

PROTEINS;

EID: 33745633632     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/18/28/S11     Document Type: Article

References (68)

1. O'Leary M W and Wilkinson S G 1988 Gram-positive bacteria Microbial Lipids ed C Ratledge (London: Academic) pp117-201
2. Wilkinson S 1988 Gram-negative bacteria Microbial Lipids ed C W Ratledge and S G Wilkinson (London: Academic) pp299-488
3. Tamm L K, Hong H and Liang B 2004 Folding and assembly of beta-barrel membrane proteins Biochim. Biophys. Acta 1666 250-63
4. Yorek M 1993 Biological distribution Phospholipid Handbook ed G Cevc (New York: Dekker)
5. Bretscher M S and Munro S 1993 Cholesterol and the golgi apparatus Science 261 1280-1
6. Epand R 1997 Lipid Polymorphism and Membrane Properties (Current Topics in Membranes vol 44) ed D Fambrough and D Benos (New York: Academic)
7. Hyde S, Andersson S, Larsson K, Blum Z, Landh T, Lidin S and Ninham B 1997 The Language of Shape (Amsterdam: Elsevier)
8. Israelachvili J N 1991 Intermolecular and Surface Forces 2nd edn (London: Academic) p450
9. Larsson K 2000 Aqueous dispersions of cubic lipid-water phases Curr. Opin. Colloid Interface Sci. 5 64-9
10. Luzzati V 1968 X-ray diffraction studies of lipid-water systems Biological Membranes ed D Chapman (London: Academic) pp71-123
11. Luzzati V and Tardieu A 1974 Lipid phases-structure and structural transitions Annu. Rev. Phys. Chem. 25 79-94
12. Seddon J M 1990 Structure of the inverted hexagonal (HII) phase, and non-lamellar phase transitions of lipids Biochim. Biophys. Acta 1031 1-69
13. Seddon J M and Templer R 1995 Polymorphism of lipid-water systems Structure and Dynamics of Membranes ed R Lipowsky and E Sackmann (Amsterdam: Elsevier) pp97-160
14. Gandhavadi M, Allende D, Vidal A, Simon S A and McIntosh T J 2002 Structure, composition, and peptide binding properties of detergent soluble bilayers and detergent resistant rafts Biophys. J. 82 1469-82
15. Simons K and Toomre D 2000 Lipid rafts and signal transduction Nat. Rev. Mol. Cell. Biol. 1 31-9
16. London E 2005 How principles of domain formation in model membranes may explain ambiguities concerning lipid raft formation in cells Biochim. Biophys. Acta 1746 203-20
17. Hazel J R and Williams E E 1990 The role of alterations in membrane lipid composition in enabling physiological adaptation of organisms to their physical environment Prog. Lipid Res. 29 167-227
18. Morein S, Andersson A, Rilfors L and Lindblom G 1996 Wild-type Escherichia coli cells regulate the membrane lipid composition in a 'window' between gel and non-lamellar structures J. Biol. Chem. 271 6801-9
19. Suutari M and Laakso S 1994 Microbial fatty acids and thermal adaptation Crit. Rev. Microbiol. 20 285-328
20. Wallin E and von Heijne G 1998 Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms Protein Sci. 7 1029-38
21. White S H and Wimley W C 1999 Membrane protein folding and stability: physical principles Annu. Rev. Biophys. Biomol. Struct. 28 319-65
22. Busch W and Saier M H Jr 2004 The IUBMB-endorsed transporter classification system Mol. Biotechnol. 27 253-62
23. Drew D, Froderberg L, Baars L and de Gier J W 2003 Assembly and overexpression of membrane proteins in Escherichia coli Biochim. Biophys. Acta 1610 3-10
24. Palsdottir H and Hunte C 2004 Lipids in membrane protein structures Biochim. Biophys. Acta 1666 2-18
25. Marsh D and Horvath L I 1998 Structure, dynamics and composition of the lipid-protein interface. Perspectives from spin-labelling Biochim. Biophys. Acta 1376 267-96
26. Luecke H, Schobert B, Richter H T, Cartailler J P and Lanyi J K 1999 Structure of bacteriorhodopsin at 1.55 A resolution J. Mol. Biol. 291 899-911
27. Valiyaveetil F I, Zhou Y and MacKinnon R 2002 Lipids in the structure, folding, and function of the KcsA K+ channel Biochemistry 41 10771-7
28. Belrhali H, Nollert P, Royant A, Menzel C, Rosenbusch J P, Landau E M and Pebay-Peyroula E 1999 Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 A resolution Struct. Fold Des. 7 909-17
29. Cartailler J P and Luecke H 2003 X-ray crystallographic analysis of lipid-protein interactions in the bacteriorhodopsin purple membrane Annu. Rev. Biophys. Biomol. Struct. 32 285-310
30. Ulmschneider M B and Sansom M S 2001 Amino acid distributions in integral membrane protein structures Biochim. Biophys. Acta 1512 1-14
31. Braun P and von Heijne G 1999 The aromatic residues Trp and Phe have different effects on the positioning of a transmembrane helix in the microsomal membrane Biochemistry 38 9778-82
32. Schulz G E 2000 beta-Barrel membrane proteins Curr. Opin. Struct. Biol. 10 443-7
33. Cantor R S 1999 Lipid composition and the lateral pressure profile in bilayers Biophys. J. 76 2625-39
34. Gruner S M 1985 Intrinsic curvature hypothesis for biomembrane lipid composition: a role for nonbilayer lipids Proc, Natl Acad. Sci. USA 82 3665-9
35. Killian J A 1998 Hydrophobic mismatch between proteins and lipids in membranes Biochim. Biophys. Acta 1376 401-15
36. Munro S 1995 An investigation of the role of transmembrane domains in Golgi protein retention Embo J. 14 4695-704
37. Mitra K, Ubarretxena-Belandia I, Taguchi T, Warren G and Engelman D M 2004 Modulation of the bilayer thickness of exocytic pathway membranes by membrane proteins rather than cholesterol Proc. Natl Acad. Sci. USA 101 4083-8
38. McAuley K E, Fyfe P K, Ridge J P, Isaacs N W, Cogdell R J and Jones M R 1999 Structural details of an interaction between cardiolipin and an integral membrane protein Proc. Natl Acad. Sci. USA 96 14706-11
39. Fyfe P K, Isaacs N W, Cogdell R J and Jones M R 2004 Disruption of a specific molecular interaction with a bound lipid affects the thermal stability of the purple bacterial reaction centre Biochim. Biophys. Acta 1608 11-22
40. Allen S J, Curran A R, Templer R H, Meijberg W and Booth P J 2004 Controlling the folding efficiency of an integral membrane protein J. Mol. Biol. 342 1293-304
41. van den Brink-van der Laan E, Chupin V, Killian J A and de Kruijff B 2004 Stability of KcsA tetramer depends on membrane lateral pressure Biochemistry 43 4240-50
42. van den Brink-van der Laan E, Chupin V, Killian J A and de Kruijff B 2004 Small alcohols destabilize the KcsA tetramer via their effect on the membrane lateral pressure Biochemistry 43 5937-42
43. Hong H and Tamm L K 2004 Elastic coupling of integral membrane protein stability to lipid bilayer forces Proc. Natl Acad. Sci. USA 101 4065-70
44. Curran A R, Templer R H and Booth P J 1999 Modulation of folding and assembly of the membrane protein bacteriorhodopsin by intermolecular forces within the lipid bilayer Biochemistry 38 9328-36
45. Meijberg W and Booth P J 2002 The activation energy for insertion of transmembrane alpha-helices is dependent on membrane composition J. Mol. Biol. 319 839-53
46. Booth P J 2005 Sane in the membrane: designing systems to modulate membrane proteins Curr. Opin. Struct. Biol. 15 435-40
47. Bogdanov M and Dowhan W 1998 Phospholipid-assisted protein folding: phosphatidylethanolamine is required at a late step of the conformational maturation of the polytopic membrane protein lactose permease Embo J. 17 5255-64
48. Bogdanov M, Heacock P N and Dowhan W 2002 A polytopic membrane protein displays a reversible topology dependent on membrane lipid composition Embo J. 21 2107-16
49. Zhang W, Bogdanov M, Pi J, Pittard A J and Dowhan W 2003 Reversible topological organization within a polytopic membrane protein is governed by a change in membrane phospholipid composition J. Biol. Chem. 278 50128-35
50. Zhang W, Campbell H A, King S C and Dowhan W 2005 Phospholipids as determinants of membrane protein topology. Phosphatidylethanolamine is required for the proper topological organization of the gamma-aminobutyric acid permease (GabP) of Escherichia coli J. Biol. Chem. 280 26032-8
51. Sukharev S I, Martinac B, Arshavsky V Y and Kung C 1993 Two types of mechanosensitive channels in the Escherichia coli cell envelope: solubilization and functional reconstitution Biophys. J. 65 177-83
52. Sukharev S I, Blount P, Martinac B, Blattner F R and Kung C 1994 A large-conductance mechanosensitive channel in E. coli encoded by mscL alone Nature 368 265-8
53. Perozo E, Kloda A, Cortes D M and Martinac B 2002 Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating Nat. Struct. Biol. 9 696-703
54. Folgering J H, Kuiper J M, de Vries A H, Engberts J B and Poolman B 2004 Lipid-mediated light activation of a mechanosensitive channel of large conductance Langmuir 20 6985-7
55. Kent C 1997 CTP: phosphocholine cytidylyltransferase Biochim. Biophys. Acta 1348 79-90
56. Attard G S, Templer R H, Smith W S, Hunt A N and Jackowski S 2000 Modulation of CTP:phosphocholine cytidylyltransferase by membrane curvature elastic stress Proc. Natl Acad. Sci. USA 97 9032-6
57. Brown M F 1994 Modulation of rhodopsin function by properties of the membrane bilayer Chem. Phys. Lipids 73 159-80
58. Litman B J and Mitchell D C 1996 A role for phospholipid polyunsaturation in modulating membrane protein function Lipids 31 S193-7
59. Albert A D, Boesze-Battaglia K, Paw Z, Watts A and Epand R M 1996 Effect of cholesterol on rhodopsin stability in disk membranes Biochim. Biophys. Acta 1297 77-82
60. Albert A D and Boesze-Battaglia K 2005 The role of cholesterol in rod outer segment membranes Prog. Lipid Res. 44 99-124
61. Sansom M S 1993 Structure and function of channel-forming peptaibols Q. Rev. Biophys. 26 365-421
62. Lewis J R and Cafiso D S 1999 Correlation between the free energy of a channel-forming voltage-gated peptide and the spontaneous curvature of bilayer lipids Biochemistry 38 5932-8
63. Keller S L, Bezrukov S M, Gruner S M, Tate M W, Vodyanoy I and and Parsegian V A 1993 Probability of alamethicin conductance states varies with nonlamellar tendency of bilayer phospholipids Biophys. J. 65 23-7
64. Schagger H, Hagen T, Roth B, Brandt U, Link T A and von Jagow G 1990 Phospholipid specificity of bovine heart bc1 complex Eur. J. Biochem. 190 123-30
65. Gomez B, Jr and Robinson N C 1999 Phospholipase digestion of bound cardiolipin reversibly inactivates bovine cytochrome bc1 Biochemistry 38 9031-8
66. Lange C, Nett J H, Trumpower B L, and C and Hunte 2001 Specific roles of protein-phospholipid interactions in the yeast cytochrome bc1 complex structure Embo J. 20 6591-600
67. Kramer R A, Zandwijken D, Egmond M R and Dekker N 2000 In vitro folding, purification and characterization of Escherichia coli outer membrane protease ompT Eur. J. Biochem. 267 885-93
68. Kramer R A, Brandenburg K, Vandeputte-Rutten L, Werkhoven M, Gros P, Dekker N and Egmond M R 2002 Lipopolysaccharide regions involved in the activation of Escherichia coli outer membrane protease OmpT Eur. J. Biochem. 269 1746-52