Stability of KcsA Tetramer Depends on Membrane Lateral Pressure

Biochemistry

Volumn 43, Issue 14, 2004, Pages 4240-4250

  Van Den Brink Van Der Laan, Els ^a   Chupin, Vladimir ^a   Killian, J Antoinette ^a   De Kruijff, Ben ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLATION; DISSOCIATION; LIPIDS; MEMBRANES; OLIGOMERS; PHOSPHOLIPIDS; POTASSIUM;

POTASSIUM CHANNEL; TETRAMER;

BIOCHEMISTRY;

CARBOXYFLUORESCEIN; CHYMOTRYPSIN; DODECYL SULFATE SODIUM; MEMBRANE PROTEIN; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; POTASSIUM CHANNEL; PROTEIN KCSA; TETRAMER; TRIFLUOROETHANOL; UNCLASSIFIED DRUG;

ARTICLE; CIRCULAR DICHROISM; DEUTERON NUCLEAR MAGNETIC RESONANCE; DISSOCIATION; LIPID BILAYER; MICELLE; PHOSPHORUS NUCLEAR MAGNETIC RESONANCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRESSURE; PRIORITY JOURNAL; PROTEIN LIPID INTERACTION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN TERTIARY STRUCTURE;

BACTERIAL PROTEINS; CELL MEMBRANE; DETERGENTS; LIPID BILAYERS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PHOSPHATIDYLCHOLINES; POLYTETRAFLUOROETHYLENE; POTASSIUM CHANNELS; PRESSURE; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SODIUM DODECYL SULFATE; STREPTOMYCES; THERMODYNAMICS;

EID: 1842479288     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi036129d     Document Type: Article

References (57)

1. Russ, W. P., and Engelman, D. M. (2000) The GxxxG motif: a framework for transmembrane helix-helix association. J. Mol. Biol. 296, 911-919.
2. Choma, C., Gratkowski, H., Lear, J. D., and DeGrado, W. F. (2000) Asparagine-mediated self-association of a model transmembrane helix. Nat. Struct. Biol. 7, 161-166.
3. Zhou, F. X., Merianos, H. J., Brunger, A. T., and Engelman, D. M. (2001) Polar residues drive association of polyleucine transmembrane helices. Proc. Natl. Acad, Sci. U.S.A. 98, 2250-2255.
4. Nussberger, S., Dorr, K., Wang, D. N., and Kuhlbrandt, W. (1993) Lipid-protein interactions in crystals of plant light-harvesting complex. J. Mol. Biol. 234, 347-356.
5. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science 272, 1136-1144.
6. Luecke, H., Schobert, B., Richter, H. T., Cartailler, J. P., and Lanyi, J. K. (1999) Structure of bacteriorhodopsin at 1.55 Å resolution, J. Mol. Biol. 291, 899-911.
7. McAuley, K. E., Fyfe, P. K., Ridge, J. P., Isaacs, N. W., Cogdell, R. J., and Jones, M. R. (1999) Structural details of an interaction between cardiolipin and an integral membrane protein, Proc. Natl. Acad. Sci. U.S.A. 96, 14706-14711.
8. Orr, J. W., and Newton, A. C. (1992) Interaction of protein kinase C with phosphatidylserine. 2. Specificity and regulation. Biochemistry 31, 4667-4673.
9. Killian, J. A. (1998) Hydrophobic mismatch between proteins and lipids in membranes. Biochim. Biophys. Acta 1376, 401-415.
10. van der Does, C., Swaving, J., van Klompenburg, W., and Driessen, A. J. (2000) Nonbilayer lipids stimulate the activity of the reconstituted bacterial protein translocase. J. Biol. Chem. 275, 2472-2478.
11. Rietveld, A. G., Koorengevel, M. C., and de Kruijff, B. (1995) Nonbilayer lipids are required for efficient protein transport across the plasma membrane of Escherichia coli. EMBO J. 14, 5506-5513.
12. Irizarry, S. N., Kutluay, E., Drews, G., Hart, S. J., and Heginbotham, L. (2002) Opening the KcsA K+ channel: tryptophan scanning and complementation analysis lead to mutants with altered gating. Biochemistry 41, 13653-13662.
13. Sansom, M. S., Shrivastava, I. H., Bright, J. N., Tate, J., Capener, C. E., and Biggin, P. C. (2002) Potassium channels: structures, models, simulations. Biochim. Biophys. Acta 1565, 294-307.
14. Kelly, B. L., and Gross, A. (2003) Potassium channel gating observed with site-directed mass tagging. Nat. Struct. Biol. 10, 280-284.
15. Nimigean, C. M., Chappie, J. S., and Miller, C. (2003) Electrostatic tuning of ion conductance in potassium channels. Biochemistry 42, 9263-9268.
16. Shen, N. V., Chen, X., Boyer, M. M., and Pfaffinger, P. J. (1993) Deletion analysis of K+ channel assembly. Neuron. 11, 67-76.
17. Splitt, H., Meuser, D., Borovok, I., Betzler, M., and Schrempf, H. (2000) Pore mutations affecting tetrameric assembly and functioning of the potassium channel KcsA from Streptomyces lividans. FEBS Lett. 472, 83-87.
18. van Dalen, A., Schrempf, H., Killian, J. A., and de Kruijff, B. (2000) Efficient membrane assembly of the KcsA potassium channel in Escherichia coli requires the protonmotive force. EMBO Rep. 1, 340-346.
19. van Dalen, A., Hegger, S., Killian, J. A., and de Kruijff, B. (2002) Influence of lipids on membrane assembly and stability of the potassium channel KcsA. FEBS Lett. 525, 33-38.
20. van Dalen, A., van der Laan, M., Driessen, A. J., Killian, J. A., and de Kruijff, B. (2002) Components required for membrane assembly of newly synthesized K+ channel KcsA. FEBS Lett. 511, 51-58.
21. Umigai, N., Sato, Y., Mizutani, A., Utsumi, T., Sakaguchi, M., and Uozumi, N. (2003) Topogenesis of two transmembrane type K+ channels, Kir 2.1 and KcsA. J. Biol. Chem. 278, 40373-40384.
22. Doyle, D. A., Morais Cabral, J., Pfuetzner, R. A., Kuo, A., Gulbis, J. M., Cohen, S. L., Chait, B. T., and MacKinnon, R. (1998) The structure of the potassium channel: molecular basis of K+ conduction and selectivity. Science 280, 69-77.
23. Cortes, D. M., Cuello, L. G., and Perozo, E. (2001) Molecular architecture of full-length KcsA: role of cytoplasmic domains in ion permeation and activation gating. J. Gen. Physiol. 117, 165-180.
24. Valiyaveetil, F. I., Zhou, Y., and MacKinnon, R. (2002) Lipids in the structure, folding, and function of the KcsA K+ channel. Biochemistry 41, 10771-10777.
25. Demmers, J. A., van Dalen, A., de Kruijff, B., Heck, A. J., and Killian, J. A. (2003) Interaction of the K+ channel KcsA with membrane phospholipids as studied by ESI mass spectrometry. FEBS Lett. 541, 28-32.
26. Cortes, D. M., and Perozo, E. (1997) Structural dynamics of the Streptomyces lividans K+ channel (SKC1): oligomeric stoichiometry and stability. Biochemistry 36, 10343-10352.
27. Buck, M. (1998) Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins. Q. Rev. Biophys. 31, 297-355.
28. Chupin, V., Killian, J. A., and de Kruijff, B. (1987) 2H-nuclear magnetic resonance investigations on phospholipid acyl chain order and dynamics in the gramicidin-induced hexagonal HII phase. Biophys. J. 51, 395-405.
29. Farren, S. B., Sommerman, E. F., and Cullis, P. R. (1984) Production of specifically 2H-labeled unsaturated phospholipids in gram quantities: a convenient synthesis of [11,11-2H2] oleic acid. Chem. Phys. Lipids 34, 279-286.
30. Perozo, E., Cortes, D. M., and Cuello, L. G. (1999) Structural rearrangements underlying K+-channel activation gating. Science 285, 73-78.
31. Provencher, S. W., and Glockner, J. (1981) Estimation of globular protein secondary structure from circular dichroism. Biochemistry 20, 33-37.
32. van Stokkum, I. H., Spoelder, H. J., Bloemendal, M., van Grondelle, R., and Groen, F. C. (1990) Estimation of protein secondary structure and error analysis from circular dichroism spectra. Anal. Biochem. 191, 110-118.
33. Manavalan, P., and Johnson, W. C., Jr. (1987) Variable selection method improves the prediction of protein secondary structure from circular dichroism spectra. Anal. Biochem. 167, 76-85.
34. Sreerama, N., and Woody, R. W. (2000) Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 287, 252-260.
35. Lobley, A., Whitmore, L., and Wallace, B. A. (2002) DICHROWEB: an interactive website for the analysis of protein secondary structure from circular dichroism spectra. Bioinformatics 18, 211-212.
36. Davis, J. H. (1983) The description of membrane lipid conformation, order and dynamics by 2H-NMR. Biochim. Biophys. Acta 737, 117-171.
37. Cullis, P. R., and de Kruijff, B. (1979) Lipid polymorphism and the functional roles of lipids in biological membranes. Biochim. Biophys. Acta 559, 399-420.
38. Veiro, J. A., Khalifah, R. G., and Rowe, E. S. (1989) The polymorphic phase behavior of dielaidoylphosphatidylethanolamine. Effect of n-alkanols. Biochim. Biophys. Acta 979, 251-256.
39. Kooijman, E. E., Chupin, V., de Kruijff, B., and Burger, K. N. (2003) Modulation of membrane curvature by phosphatidic acid and lysophosphatidic acid. Traffic 4, 162-174.
40. Cherezov, V., Clogston, J., Misquitta, Y., Abdel-Gawad, W., and Caffrey, M. (2002) Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase. Biophys. J. 83, 3393-3407.
41. Lehrman, S. R., Tuls, J. L., and Lund, M. (1990) Peptide α-helicity in aqueous trifluoroethanol. Correlations with predicted α-helicity and the secondary structure of the corresponding regions of bovine growth hormone. Biochemistry 29, 5590-5596.
42. Barry, J. A., and Gawrisch, K. (1994) Direct NMR evidence for ethanol binding to the lipid-water interface of phospholipid bilayers. Biochemistry 33, 8082-8088.
43. Holte, L. L., and Gawrisch, K. (1997) Determining ethanol distribution in phospholipid multilayers with MAS-NOESY spectra. Biochemistry 36, 4669-4674.
44. van den Brink-van der Laan, E., Dalbey, R. E., Demel, R. A., Killian, J. A., and de Kruijff, B. (2001) Effect of nonbilayer lipids on membrane binding and insertion of the catalytic domain of leader peptidase. Biochemistry 40, 9677-9684.
45. MacPhee, C. E., Perugini, M. A., Sawyer, W. H., and Howlett, G. J. (1997) Trifluoroethanol induces the self-association of specific amphipathic peptides. FEBS Lett. 416, 265-268.
46. Cantor, R. S. (1997) Lateral pressures in cell membranes: a mechanism for modulation of protein function. J. Phys. Chem. B 101, 1723-1725.
47. Marsh, D. (1996) Components of the lateral pressure in lipid bilayers deduced from HII phase dimensions. Biochim. Biophys. Acta 1279, 119-123.
48. Cantor, R. S. (1999) Lipid composition and the lateral pressure profile in bilayers. Biophys. J. 76, 2625-2639.
49. Curran, A. R., Templer, R. H., and Booth, P. J. (1999) Modulation of folding and assembly of the membrane protein bacteriorhodopsin by intermolecular forces within the lipid bilayer. Biochemistry 38, 9328-9336.
50. Keller, S. L., Bezrukov, S. M., Gruner, S. M., Tate, M. W., Vodyanoy, I., and Parsegian, V. A. (1993) Probability of alamethicin conductance states varies with nonlamellar tendency of bilayer phospholipids. Biophys. J. 65, 23-27.
51. Cantor, R. S. (2002) Size distribution of barrel-stave aggregates of membrane peptides: influence of the bilayer lateral pressure profile. Biophys. J. 82, 2520-255.
52. Bezrukov, S. M. (2000) Functional consequences of lipid packing stress. Curr. Opin. Colloid Interface Sci. 5, 237-243.
53. de Kruijff, B. (1997) Lipid polymorphism and biomembrane function. Curr. Opin. Chem. Biol. 1, 564-569.
54. de Kruijff, B. (1997) Lipids beyond the bilayer. Nature 386, 129-130.
55. Cantor, R. S. (1997) The lateral pressure profile in membranes: a physical mechanism of general anesthesia. Biochemistry 36, 2339-2344.
56. Cantor, R. S. (1998) The lateral pressure profile in membranes: a physical mechanism of general anesthesia. Toxicol Lett. 100, 451-458.
57. Faham, S., and Bowie, J. U. (2002) Bicelle crystallization: a new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure1. J. Mol. Biol. 316, 1-6.