Complete Nucleotide Sequence of Mitochondrial Genome in Silkie Fowl (Gallus gallus var. domesticus)

Journal of Poultry Science

Volumn 41, Issue 1, 2004, Pages 76-82

  Wada, Yasuhiko ^a,b   Yamada, Yoshiyuki ^a   Nishibori, Masahide ^c   Yasue, Hiroshi ^d  

^a SAGA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c HIROSHIMA UNIVERSITY   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

phylogenetic analysis; Silkie fowl; whole mitochondrial DNA

Indexed keywords

EID: 33745490229     PISSN: 13467395     EISSN: 13490486     Source Type: Journal    
DOI: 10.2141/jpsa.41.76     Document Type: Article

References (18)

1. Adachi J and Hasegawa M. Computer Science Monographs, No. 28. MOLPHY version 2.3: Programs for Molecular Phylogenetics, Based on Maximum Likelihood. Institute of Statistical Mathematics, Tokyo, JAPAN. 1996.
2. Cao Y, Adachi J and Hasegawa M. Eutherian phylogeny as inferred from mitochondrial DNA sequence data. Japanese Journal of Genetics, 69: 455–472. 1994.
3. Dimcheff DE, Drovetski SV, Krishnan M and Mindell DP. Cospeciation and horizontal transmission of avian sarcoma and Leukosis virus gag genes in Galliform birds. Journal of Virology, 74: 3984–3995. 2000.
4. Hasegawa M and Adachi J. Phylogenetic position of Cetaceans relative to Artiodactyls: reanalysis of mitochondrial and nuclear sequences. Molecular Biology and Evolution, 13: 710–717. 1996.
5. Kimball RT, Braun EL, Zwartjes PW, Crowe TM and Ligon JD. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Molecular Phylogenetics and Evolution, 11: 38–54. 1999.
6. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16: 111–120. 1980.
7. Mindell DP, Sorenson MD and Dimcheff DE. An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Molecular Biology and Evolution, 15: 1568–1571. 1999.
8. Muramatsu Y. Chapter 1. Invitation to Japanese native chicken. In: Nihonkei-taikan (Koyama H ed.). pp. 49–51. Pet Life Co. Ltd., Tokyo. 1979. (in Japanese)
9. Nirasawa K, Takahashi H, Furukawa T, Kikuchi K, Noguchi J, Izaike Y and Oishi T. Chicken genetic resources in Japan and new evaluation research. Research Council Secretariat of MAFF and National Institute of Agrobiological Resources. Tsukuba, 1997.
10. Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y and Yasue H. Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Animal Genetics, 32: 380–385. 2001.
11. Nishibori M, Tsudzuki M, Hayashi T, Yamamoto Y and Yasue H. Complete nucleotide sequence of the Coturnix chinensis (Blue-breasted quail) mitochondrial genome and a phylogenetic analysis with related species. Journal of Heredity, 93: 439–447. 2002.
12. Nishibori M, Hanazono M, Yamamoto Y, Tsudzuki M and Yasue H. Complete nucleotide sequence of mitochondrial DNA in chickens, White-Leghorn and White Plymouth Rock. Animal Science Journal, 74: 437–439. 2003.
13. Niu D, Fu Y, Luo J, Ruam H, Yu X-P, Chen G and Zhang Y-P. The origin and genetic diversity of Chinese native chicken breeds. Biochemical Genetics, 40: 163–174. 2002.
14. th edition. Blackwell Science Ltd. Malden, MA, USA. 1997.
15. Saitou N and Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4: 406–425. 1987.
16. Sambrook J and Russel DW. Molecular Cloning: A Laboratory Manual 3rd ed. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York, USA. 2001.
17. Thompson JD, Gibson TJ, Plewniak F, Jcanmougin F and Higgins DG. The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24: 4876–4882. 1997.
18. Wimmers K, Ponsuksili S, Hardge T, Valle-Zarate A, Mathur PK and Horst P. Genetic distinctness of African, Asian, and South American local chickens. Animal Genetics, 31: 159–165. 2000.