Theoretical study of the catalytic reaction mechanism of MndD

Journal of Biological Inorganic Chemistry

Volumn 11, Issue 5, 2006, Pages 571-585

  Georgiev, Valentin ^a   Borowski, Tomasz ^b   Siegbahn, Per E M ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b INSTITUTE OF CATALYSIS AND SURFACE CHEMISTRY   (Poland)

Author keywords

Density functional calculations; Dioxygenase; Extradiol; Homoprotocatechuate

Indexed keywords

3,4 DIHYDROXYPHENYLACETIC ACID; ANION; AROMATIC COMPOUND; DIOXYGENASE; EPOXIDE; HYDROPEROXIDE; HYDROXYL GROUP; LACTONE; MANGANESE; MANGANESE DEPENDENT HOMOPROTOCATECHUATE 2,3 DIOXYGENASE; OXYGEN; UNCLASSIFIED DRUG;

ARTICLE; CATABOLISM; CATALYSIS; CHEMICAL BOND; CRYSTAL STRUCTURE; DENSITY FUNCTIONAL THEORY; DIHYDROXYLATION; ENZYME ACTIVE SITE; ENZYME MECHANISM; ENZYME SUBSTRATE COMPLEX; HYDROLYSIS; MOLECULAR MODEL; MOLECULAR SIZE; PRIORITY JOURNAL; REACTION ANALYSIS; RING OPENING;

BINDING SITES; CATALYSIS; DIOXYGENASES; MANGANESE; MODELS, MOLECULAR; OXYGEN; SUBSTRATE SPECIFICITY;

EID: 33745355783     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-006-0106-9     Document Type: Article

References (25)

1. Ornston LN, Stanier RY (1966) J Biol Chem 241:3776-3786
2. Dagley S (1977) Surv Prog Chem 8:121-170
3. Broderick JB (1999) Essays Biochem 34:173-189
4. Lipscomb JD, Orville AM (1992) Met Ions Biol Syst 28:243-298
5. Que L Jr, Ho RYN (1996) Chem Rev 96:2607-2624
6. Boldt YR, Sadowsky MJ, Ellis LBM, Que L Jr, Wackett LP (1995) J Bacteriol 177:1225-1232
7. Vetting MW, Wackett LP, Que L Jr, Lipscomb JD, Ohlendorf DH (2004) J Bacteriol 186:1945-1958
8. Bassan A, Borowski T, Siegbahn PEM (2004) Dalton Trans 3153-3162
9. Que L Jr (2000) Nat Struct Biol 7:182-184
10. Whiting AK, Boldt YR, Hendrich LP, Wackett LP, Que L Jr (1996) Biochemistry 35:160-170
11. Sato N, Uragami Y, Nishizaki T, Takahashi Y, Sazaki G, Sugimoto K, Nokana T, Masai E, Fukuda M, Senda T (2002) J Mol Biol 321:621-636
12. Deeth RJ, Bugg TDH (2003) J Biol Inorg Chem 8:409
13. Bugg TDH, Lin G (2001) Chem Commun 11:941-952
14. Miller MA, Lipscomb JD (1996) J Biol Chem 271:5524-5535
15. Shu L, Chiou YM, Orville AM, Miller MA, Lipscomb JD, Que L Jr (1995) Biochemistry 34:6649-6659
16. Groce SL, Lipscomb JD (2005) Biochemistry 44:7175-7188
17. Arciero DM, Orville AM, Lipscomb JD (1985) J Biol Chem 260:14035-14044
18. Emerson J, Wagner ML, Reynolds MF, Que L Jr, Sadowsky MJ, Wacket LP (2005) J Biol Inorg Chem 10:751-760
19. Schrödinger Inc (2000) JAGUAR 4.0. Schrödinger, Portland
20. Frisch MJ et al (2003) Gaussian 03, revision B.03. Gaussian, Pittsburgh
21. Himo F (2005) Biochim Biophys Acta Bioenerg 1707:24-33
22. Siegbahn PEM, Haeffner F (2004) J Am Chem Soc 126:8919-8932
23. Borowski T, Georgiev V, Siegbahn PEM (2005) J Am Chem Soc 127:17303-17314
24. Bugg TDH (2003) Tetrahedron 59:7075-7101
25. Shaik S, Kumar D, de Viser S, Altun A, Thiel W (2005) Chem Rev 105:2279-2328