Solid-phase extraction and elution on diamond (SPEED): A fast and general platform for proteome analysis with mass spectrometry

Analytical Chemistry

Volumn 78, Issue 12, 2006, Pages 4228-4234

  Chen, Wei Hao ^a,b   Lee, Sheng Chung ^b,c   Sabu, Sahadevan ^a   Fang, Huei Chun ^a   Chung, Shu Chien ^a   Han, Chau Chung ^a,d   Chang, Huan Cheng ^a,d  

^a INSTITUTE OF ATOMIC AND MOLECULAR SCIENCES   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

^d GENOMICS RESEARCH CENTER   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DISULFIDE BONDS; PROTEOME ANALYSIS; RESIDUAL CHEMICALS; SOLID-PHASE EXTRACTION;

DESORPTION; DIAMONDS; LASER APPLICATIONS; MASS SPECTROMETRY; NANOSTRUCTURED MATERIALS; PROTEINS;

EXTRACTION;

ADSORBENT; CHEMICAL COMPOUND; CYSTEINE; DIAMOND; DODECYL SULFATE SODIUM; NANOCRYSTAL; PROTEIN; PROTEOME;

ARTICLE; CONTROLLED STUDY; DISULFIDE BOND; ELECTROSPRAY MASS SPECTROMETRY; ELUTION; FEMALE; HUMAN; LIQUID CHROMATOGRAPHY; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN PURIFICATION; PROTEIN URINE LEVEL; SOLID PHASE EXTRACTION; SOLID PHASE EXTRACTION AND ELUTION ON DIAMOND; TANDEM MASS SPECTROMETRY; TECHNIQUE; URINE;

AMINO ACID SEQUENCE; DIAMOND; DISULFIDES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EQUIPMENT DESIGN; HUMANS; MOLECULAR SEQUENCE DATA; NANOTECHNOLOGY; PROTEINS; PROTEINURIA; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 33745252024     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac052085y     Document Type: Article

References (30)

1. Godovac-Zimmermann, J.; Brown, L. R. Mass Spectrom. Rev. 2001, 20, 1-57.
2. Wittke, S.; Mischak, H.; Walden, M.; Kolch, W.; Rädler, T.; Wiedemann, K. Electrophoresis 2005, 26, 1476-1487.
3. Chalmers, M. J.; Mackay, C. L.; Hendrickson, C. L.; Wittke, S.; Walden, M.; Mischak, H.; Fliser, D.; Just, I.; Marshall, A. G. Anal. Chem. 2005, 77, 7163-7171.
4. Samyn, B.; Sergeant, K.; Castanheira, P.; Faro, C.; Van Beeumen, J. Nat. Methods 2005, 2, 193-200.
5. Oh, J.; Pyo, J.-H.; Jo, E.-H.; Hwang, S.-I.; Kang, S.-C.; Jung, J.-H.; Park, E.-K.; Kim, S.-Y.; Choi, J.-Y.; Lim, J. Proteomics 2004, 4, 3485-3497.
6. Wattiez, R.; Falmagne, P. J. Chromatogr., B 2005, 815, 169-178.
7. Finehout, E. J.; Franck, Z.; Lee, K. H. Electrophoresis 2004, 25, 2564-2575.
8. Pieper, R.; Gatlin, C. L.; Makusky, A. J.; Russo, P. S.; Schatz, C. R.; Miller, S. S.; Su, Q.; McGrath, A. M.; Estock, M. A.; Parmar, P. P.; Zhao, M.; Huang, S.-T.; Zhou, J.; Wang, F.; Esquer-Blasco, R.; Anderson, N. L.; Taylor, J.; Steiner, S. Proteomics 2003, 3, 1345-1364.
9. Pieper, R.; Gatlin, C. L.; McGrath, A. M.; Makusky, A. J.; Mondal, M.; Seonarain, M.; Field, E.; Schatz, C. R.; Estock, M. A.; Ahmed, N.; Anderson, N. G.; Steiner, S. Proteomics 2004, 4, 1159-1174.
10. Tantipaiboonwong, P.; Sinchaikul, S.; Sriyam, S.; Phutrakul, S.; Chen, S.-T. Proteomics 2005, 5, 1140-1149.
11. He, P.; He, H.-Z.; Dai, J.; Wang, Y.; Sheng, Q.-H.; Zhou, L-P.; Zhang, Z.-S.; Sun, Y.-L.; Liu, F.; Wang, K.; Zhang, J.-S.; Wang, H.-X.; Song, Z.-M.; Zhang, H.-R.; Zeng, R.; Zhao, X.-H. Proteomics 2005, 5, 3442-3453.
12. Pang, J. X.; Ginanni, N.; Dongre, A. R.; Hefta, S. A.; Opitek, G. J. J. Proteome Res. 2002, 1, 161-169.
13. Spahr, C. S.; Davis, M. T.; McGinley, M. D.; Robinson, J. H.; Bures, E. J.; Beierle, J.; Mort, J.; Courchesne, P. L.; Chen, K.; Wahl, R. C.; Yu, W.; Luethy, R.; Patterson, S. D. Proteomics 2001, 1, 93-107.
14. Doucette, A.; Craft, D.; Li, L. Anal. Chem. 2000, 72, 3355-3362.
15. Björhall, K.; Miliotis, T.; Davidsson, P. Proteomics 2005, 5, 307-317.
16. Chen, Y.-Y.; Lin, S.-Y.; Yen, Y.-Y.; Hsiao, H.-H.; Wu, C.-Y.; Chen, S.-T.; Wang, A. H.-J. Electrophoresis 2005, 26, 2117-2127.
17. Cho, S. Y.; Lee, E.-Y.; Lee, J. S.; Kim, H.-Y.; Park, J. M.; Kwon, M.-S.; Park, Y.-K.; Lee, H.-J.; Kang, M.-.T.; Kim, J. Y.; Yoo, J. S.; Park, S. J.; Cho, J. W.; Kim, H.-S.; Paik, Y. K. Proteomics 2005, 5, 3386-3396.
18. Ogata, Y.; Charlesworth, M. C.; Muddiman, D. C. J. Proteome Res. 2005, 4, 837-845.
19. Zolotarjova, N.; Martosella, J.; Nicol, G.; Bailey, J.; Boyes, B. E.; Barrett, W. C. Proteomics 2005, 5, 3304-3313.
20. Xu, J.; Rally, J. P. Proceedings of INTERTECH 2003, Industrial Diamond Association of America, Columbus, OH, 2003.
21. Janecki, D. J.; Broshears, W. C.; Reilly, J. P. Anal. Chem. 2004, 76, 6643-6650.
22. Chen, Y.-J.; Chen, S.-H.; Chien, Y-Y.; Chang, Y-W.; Liao, H.-K.; Chang, C.-Y.; Jan, M.-D.; Wang, K.-T.; Lin, C.-C. ChemBioChem 2005, 6, 1169-1173.
23. Jessani, N.; Niessen, S.; Wei, B. Q.; Nicolau, M.; Humphrey, M.; Ji, Y.; Han, W.; Noh, D.-Y.; Yates, J. R.; Jeffrey, S. S.; Cravatt, B. F. Nat. Methods 2005, 2, 691-697.
24. Huang, L.-C. L.; Chang, H.-C. Langmuir 2004, 20, 5879-5884.
25. Kong, X. L.; Huang, L.-C. L.; Hsu, C.-M.; Chen, W.-H.; Han, C.-C.; Chang, H.-C. Anal. Chem. 2005, 77, 259-265.
26. A 1:20 mass ratio of the total proteins to the nanodiamonds was found sufficient for effective protein adsorption, but increasing the diamond dosage to a level of 50 times the protein mass facilitates high-throughput operations due to reduced relative loss in collection of nanodiamonds after centrifugation.
27. Tsay, Y. G.; Wang, Y. H.; Chiu, C. M.; Shen, B. J.; Lee, S. C. Anal. Biochem. 2000, 287, 55-64.
28. Laemmli, U. K. Nature 1970, 227, 680-685.
29. Fung, K. Y.; Glode, L. M.; Green, S.; Duncan, M. W. Prostate 2004, 61, 171-181.
30. Smith, G.; Barratt, D.; Rowlinson, R.; Nickson, J.; Tonge, R. Proteomics 2005, 5, 2315-2318.