-
1
-
-
0037657894
-
Photoactive yellow protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism
-
Cusanovich, M. A., and Meyer, T. E. (2003) Photoactive yellow protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism, Biochemistry 42, 4759-4770.
-
(2003)
Biochemistry
, vol.42
, pp. 4759-4770
-
-
Cusanovich, M.A.1
Meyer, T.E.2
-
2
-
-
0037468225
-
Photoactive yellow protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go?
-
Hellingwerf, K. J., Hendriks, J., and Gensch, T. (2003) Photoactive yellow protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go? J. Phys. Chem. A 107, 1082-1094.
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 1082-1094
-
-
Hellingwerf, K.J.1
Hendriks, J.2
Gensch, T.3
-
3
-
-
0029110488
-
1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site and chromophore
-
Borgstahl, G. E. O., Williams, D. R., and Getzoff, E. D. (1995) 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site and chromophore, Biochemistry 34, 6278-6287.
-
(1995)
Biochemistry
, vol.34
, pp. 6278-6287
-
-
Borgstahl, G.E.O.1
Williams, D.R.2
Getzoff, E.D.3
-
4
-
-
11844294715
-
A structural pathway for signalling in the E46Q mutant of photoactive yellow protein
-
Rajagopal, S., Anderson, S., Šrajer, V., Schmidt, M., Pahl, R., and Moffat, K. (2005) A structural pathway for signalling in the E46Q mutant of photoactive yellow protein, Structure 13, 55-63.
-
(2005)
Structure
, vol.13
, pp. 55-63
-
-
Rajagopal, S.1
Anderson, S.2
Šrajer, V.3
Schmidt, M.4
Pahl, R.5
Moffat, K.6
-
5
-
-
21044432995
-
Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
-
Ihee, H., Rajagopal, S., Šrajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P. A., Wulff, M., and Moffat, K. (2005) Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds, Proc. Natl. Acad. Sci. U.S.A. 102, 7145-7150.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 7145-7150
-
-
Ihee, H.1
Rajagopal, S.2
Šrajer, V.3
Pahl, R.4
Anderson, S.5
Schmidt, M.6
Schotte, F.7
Anfinrud, P.A.8
Wulff, M.9
Moffat, K.10
-
6
-
-
0031039399
-
Structure of a protein photocycle intermediate by millisecond time-resolved crystallography
-
Genick, U. K., Borgstahl, G. E., Ng, K., Ren, Z., Pradervand, C., Burke, P. M., Srajer, V., Teng, T. Y., Schildkamp, W., McRee, D. E., Moffat, K., and Getzoff, E. D. (1997) Structure of a protein photocycle intermediate by millisecond time-resolved crystallography, Science 275, 1471-1475.
-
(1997)
Science
, vol.275
, pp. 1471-1475
-
-
Genick, U.K.1
Borgstahl, G.E.2
Ng, K.3
Ren, Z.4
Pradervand, C.5
Burke, P.M.6
Srajer, V.7
Teng, T.Y.8
Schildkamp, W.9
McRee, D.E.10
Moffat, K.11
Getzoff, E.D.12
-
7
-
-
0037596438
-
Solution structure and backbone dynamics of the photoactive yellow protein
-
Dux, P., Rubinstenn, G., Vuister, G. W., Boelens, R., Mulder, F. A. A., Hard, K., Hoff, W. D., Kroon, A. R., Crielaard, W., Hellingwerf, K. J., and Kaptein, R. (1998) Solution structure and backbone dynamics of the photoactive yellow protein, Biochemistry 37, 12689-12699.
-
(1998)
Biochemistry
, vol.37
, pp. 12689-12699
-
-
Dux, P.1
Rubinstenn, G.2
Vuister, G.W.3
Boelens, R.4
Mulder, F.A.A.5
Hard, K.6
Hoff, W.D.7
Kroon, A.R.8
Crielaard, W.9
Hellingwerf, K.J.10
Kaptein, R.11
-
8
-
-
0032990441
-
PAS domains: Internal sensors of oxygen, redox potential, and light
-
Taylor, B. L., and Zhulin, I. B. (1999) PAS domains: Internal sensors of oxygen, redox potential, and light, Microbiol. Mol. Biol. Rev. 63, 479-506.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
9
-
-
0028100905
-
Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila
-
Hoff, W. D., van Stokkum, I. H. M., van Ramesdonk, H.-J., van Brederode, M. E., Brouwer, A. M., Fitch, J. C., Meyer, T. E., van Grondelle, R., and Hellingwerf, K. J. (1994) Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila, Biophys. J. 67, 1691-1705.
-
(1994)
Biophys. J.
, vol.67
, pp. 1691-1705
-
-
Hoff, W.D.1
Van Stokkum, I.H.M.2
Van Ramesdonk, H.-J.3
Van Brederode, M.E.4
Brouwer, A.M.5
Fitch, J.C.6
Meyer, T.E.7
Van Grondelle, R.8
Hellingwerf, K.J.9
-
10
-
-
0031808072
-
New photocycle intermediate in the photoactive yellow protein from Ectorhodospira halophila: Picosecond transient absorption spectroscopy
-
Ujj, L., Devanathan, S., Meyer, T. E., Cusanovich, M. A., Tollin, G., and Atkinson, G. H. (1998) New photocycle intermediate in the photoactive yellow protein from Ectorhodospira halophila: Picosecond transient absorption spectroscopy, Biophys. J. 75, 406-412.
-
(1998)
Biophys. J.
, vol.75
, pp. 406-412
-
-
Ujj, L.1
Devanathan, S.2
Meyer, T.E.3
Cusanovich, M.A.4
Tollin, G.5
Atkinson, G.H.6
-
11
-
-
0037305871
-
Deuterium isotope effects in the photocycle transitions of the photoactive yellow protein
-
Hendriks, J., van Stokkum, I. H. M., and Hellingwerf, K. J. (2003) Deuterium isotope effects in the photocycle transitions of the photoactive yellow protein, Biophys. J. 84, 1180-1191.
-
(2003)
Biophys. J.
, vol.84
, pp. 1180-1191
-
-
Hendriks, J.1
Van Stokkum, I.H.M.2
Hellingwerf, K.J.3
-
12
-
-
29344435548
-
Time-resolved single tryptophan fluorescence in photoactive yellow protein monitors changes in the chromophore structure during the photocycle via energy transfer
-
Otto, H., Hoersch, D., Meyer, T. E., Cusanovich, M. A., and Heyn, M. P. (2005) Time-resolved single tryptophan fluorescence in photoactive yellow protein monitors changes in the chromophore structure during the photocycle via energy transfer, Biochemistry 44, 16804-16816.
-
(2005)
Biochemistry
, vol.44
, pp. 16804-16816
-
-
Otto, H.1
Hoersch, D.2
Meyer, T.E.3
Cusanovich, M.A.4
Heyn, M.P.5
-
13
-
-
0035852878
-
Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation
-
Xie, A., Kelemen, L., Hendriks, J., White, B. J., Hellingwerf, K. J., and Hoff, W. D. (2001) Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation, Biochemistry 40, 1510-1517.
-
(2001)
Biochemistry
, vol.40
, pp. 1510-1517
-
-
Xie, A.1
Kelemen, L.2
Hendriks, J.3
White, B.J.4
Hellingwerf, K.J.5
Hoff, W.D.6
-
14
-
-
0037031251
-
Kinetics of proton uptake and dye binding by photoactive yellow protein in wild type and in the E46Q and E46A mutants
-
Borucki, B., Devanathan, S., Otto, H., Cusanovich, M. A., Tollin, G., and Heyn, M. P. (2002) Kinetics of proton uptake and dye binding by photoactive yellow protein in wild type and in the E46Q and E46A mutants, Biochemistry 41, 10026-10037.
-
(2002)
Biochemistry
, vol.41
, pp. 10026-10037
-
-
Borucki, B.1
Devanathan, S.2
Otto, H.3
Cusanovich, M.A.4
Tollin, G.5
Heyn, M.P.6
-
15
-
-
0031821274
-
Structural and dynamic changes of photoactive yellow protein during its photocycle in solution
-
Rubinstenn, G., Vuister, G. W., Mulder, F. A. A., Dux, P. E., Boelens, R., Hellingwerf, K. J., and Kaptein, R. (1998) Structural and dynamic changes of photoactive yellow protein during its photocycle in solution, Nat. Struct. Biol. 5, 568-570.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 568-570
-
-
Rubinstenn, G.1
Vuister, G.W.2
Mulder, F.A.A.3
Dux, P.E.4
Boelens, R.5
Hellingwerf, K.J.6
Kaptein, R.7
-
16
-
-
0035877707
-
PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation
-
Lee, B.-C., Croonquist, P. A., Sosnick, T. R., and Hoff, W. D. (2001) PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation, J. Biol. Chem. 276, 20821-20823.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20821-20823
-
-
Lee, B.-C.1
Croonquist, P.A.2
Sosnick, T.R.3
Hoff, W.D.4
-
17
-
-
0037137227
-
Light-induced global conformational change of photoactive yellow protein in solution
-
Imamoto, Y., Kamikubo, H., Harigai, M., Shimizu, N., and Kataoka, M. (2002) Light-induced global conformational change of photoactive yellow protein in solution, Biochemistry 41, 13595-13601.
-
(2002)
Biochemistry
, vol.41
, pp. 13595-13601
-
-
Imamoto, Y.1
Kamikubo, H.2
Harigai, M.3
Shimizu, N.4
Kataoka, M.5
-
19
-
-
0024730905
-
Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila: Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery
-
Meyer, T. E., Tollin, G., Hazzard, J. H., and Cusanovich, M. A. (1989) Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila: Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery, Biophys. J. 56, 559-564.
-
(1989)
Biophys. J.
, vol.56
, pp. 559-564
-
-
Meyer, T.E.1
Tollin, G.2
Hazzard, J.H.3
Cusanovich, M.A.4
-
20
-
-
0023152468
-
Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin
-
Meyer, T. E., Yakali, E., Cusanovich, M. A., and Tollin, G. (1987) Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin, Biochemistry 26, 418-423.
-
(1987)
Biochemistry
, vol.26
, pp. 418-423
-
-
Meyer, T.E.1
Yakali, E.2
Cusanovich, M.A.3
Tollin, G.4
-
21
-
-
0034600350
-
Evidence for a protonated and cis configuration chromophore in the photobleached intermediate of photoactive yellow protein
-
Unno, M., Kumauchi, M., Sasaki, J., Tokunaga, F., and Yamauchi, S. (2000) Evidence for a protonated and cis configuration chromophore in the photobleached intermediate of photoactive yellow protein, J. Am. Chem. Soc. 122, 4233-4234.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 4233-4234
-
-
Unno, M.1
Kumauchi, M.2
Sasaki, J.3
Tokunaga, F.4
Yamauchi, S.5
-
22
-
-
1942454883
-
Time-resolved resonance Raman structural studies of the pB′ intermediate in the photocycle of photoactive yellow protein
-
Pan, D., Philip, A., Hoff, W. D., and Mathies, R. A. (2004) Time-resolved resonance Raman structural studies of the pB′ intermediate in the photocycle of photoactive yellow protein, Biophys. J. 86, 2374-23283.
-
(2004)
Biophys. J.
, vol.86
, pp. 2374-23283
-
-
Pan, D.1
Philip, A.2
Hoff, W.D.3
Mathies, R.A.4
-
23
-
-
0031021311
-
Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein
-
Genick, U. K., Devanathan, S., Meyer, T. E., Canestrelli, I. L., Williams, E., Cusanovich, M. A., Tollin, G., and Getzoff, E. D. (1997) Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein, Biochemistry 36, 8-14.
-
(1997)
Biochemistry
, vol.36
, pp. 8-14
-
-
Genick, U.K.1
Devanathan, S.2
Meyer, T.E.3
Canestrelli, I.L.4
Williams, E.5
Cusanovich, M.A.6
Tollin, G.7
Getzoff, E.D.8
-
24
-
-
0041846661
-
2 intermediates, chromophore deprotonation by hydroxyl uptake, and protonation relaxation in the dark state
-
2 intermediates, chromophore deprotonation by hydroxyl uptake, and protonation relaxation in the dark state, Biochemistry 42, 8780-8790.
-
(2003)
Biochemistry
, vol.42
, pp. 8780-8790
-
-
Borucki, B.1
Otto, H.2
Joshi, C.P.3
Gasperi, C.4
Cusanovich, M.A.5
Devanathan, S.6
Tollin, G.7
Heyn, M.P.8
-
25
-
-
27144534241
-
Effect of salt and pH on the activation of photoactive yellow protein and gateway mutants Y98Q and Y98F
-
Borucki, B., Kyndt, J. A., Joshi, C. P., Otto, H., Meyer, T. E., Cusanovich, M. A., and Heyn, M. P. (2005) Effect of salt and pH on the activation of photoactive yellow protein and gateway mutants Y98Q and Y98F, Biochemistry 44, 13650-13663.
-
(2005)
Biochemistry
, vol.44
, pp. 13650-13663
-
-
Borucki, B.1
Kyndt, J.A.2
Joshi, C.P.3
Otto, H.4
Meyer, T.E.5
Cusanovich, M.A.6
Heyn, M.P.7
-
26
-
-
0345707600
-
Role of an N-terminal loop in the secondary structural change of photoactive yellow protein
-
Harigai, M., Imamoto, Y., Kamikubo, H., Yamazaki, Y., and Kataoka, M. (2003) Role of an N-terminal loop in the secondary structural change of photoactive yellow protein, Biochemistry 42, 13893-13900.
-
(2003)
Biochemistry
, vol.42
, pp. 13893-13900
-
-
Harigai, M.1
Imamoto, Y.2
Kamikubo, H.3
Yamazaki, Y.4
Kataoka, M.5
-
27
-
-
7544223280
-
Direct observation of the pH-dependent equilibrium between L-like and M intermediates of photoactive yellow protein
-
Imamoto, Y., Harigai, M., and Kataoka, M. (2004) Direct observation of the pH-dependent equilibrium between L-like and M intermediates of photoactive yellow protein, FEBS Lett. 577, 75-80.
-
(2004)
FEBS Lett.
, vol.577
, pp. 75-80
-
-
Imamoto, Y.1
Harigai, M.2
Kataoka, M.3
-
28
-
-
0027462930
-
A light-dependent branching reaction in the photocycle of the yellow protein from Ectothiorhodospira halophila
-
Miller, A., Leigeber, H., Hoff, W. D., and Hellingwerf, K. J. (1993) A light-dependent branching reaction in the photocycle of the yellow protein from Ectothiorhodospira halophila, Biochim. Biophys. Acta 1141, 190-196.
-
(1993)
Biochim. Biophys. Acta
, vol.1141
, pp. 190-196
-
-
Miller, A.1
Leigeber, H.2
Hoff, W.D.3
Hellingwerf, K.J.4
-
29
-
-
0033580921
-
Protonation deprotonation reactions triggered by photoactivation of photoactive yellow protein from Ectothiorhodospira halophila
-
Hendriks, J., Hoff, W. D., Crielaard, W., and Hellingwerf, K. J. (1999) Protonation deprotonation reactions triggered by photoactivation of photoactive yellow protein from Ectothiorhodospira halophila, J. Biol. Chem. 274, 17655-17660.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17655-17660
-
-
Hendriks, J.1
Hoff, W.D.2
Crielaard, W.3
Hellingwerf, K.J.4
-
30
-
-
12144274026
-
2 intermediates in the photocycle of photoactive yellow protein by double flash experiments with variable time delay
-
2 intermediates in the photocycle of photoactive yellow protein by double flash experiments with variable time delay, Biochemistry 44, 656-665.
-
(2005)
Biochemistry
, vol.44
, pp. 656-665
-
-
Joshi, C.P.1
Borucki, B.2
Otto, H.3
Meyer, T.E.4
Cusanovich, M.A.5
Heyn, M.P.6
-
31
-
-
0001170301
-
Reorientation of the retinylidene chromophore in the K, L, and M intermediates of bacteriorhodopsin from time-resolved linear dichroism: Resolving kinetically and spectrally overlapping intermediates of chromoproteins
-
Borucki, B., Otto, H., and Heyn, M. P. (1999) Reorientation of the retinylidene chromophore in the K, L, and M intermediates of bacteriorhodopsin from time-resolved linear dichroism: Resolving kinetically and spectrally overlapping intermediates of chromoproteins, J. Phys. Chem. B 103, 6371-6383.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 6371-6383
-
-
Borucki, B.1
Otto, H.2
Heyn, M.P.3
-
32
-
-
0037417745
-
Heterologous production of Halorhodospira halophila holophotoactive yellow protein through tandem expression of the postulated biosynthetic genes
-
Kyndt, J. A., Vanrobaeys, F., Fitch, J. C., Devreese, B. V., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (2003) Heterologous production of Halorhodospira halophila holophotoactive yellow protein through tandem expression of the postulated biosynthetic genes, Biochemistry 42, 965-970.
-
(2003)
Biochemistry
, vol.42
, pp. 965-970
-
-
Kyndt, J.A.1
Vanrobaeys, F.2
Fitch, J.C.3
Devreese, B.V.4
Meyer, T.E.5
Cusanovich, M.A.6
Van Beeumen, J.J.7
-
33
-
-
0030735003
-
Evidence for the first phase of the reprotonation switch of bacteriorhodopsin from time-resolved photovoltage and flash photolysis experiments on the photoreversal of the M-intermediate
-
Dickopf, S., and Heyn, M. P. (1997) Evidence for the first phase of the reprotonation switch of bacteriorhodopsin from time-resolved photovoltage and flash photolysis experiments on the photoreversal of the M-intermediate, Biophys. J. 73, 3171-3181.
-
(1997)
Biophys. J.
, vol.73
, pp. 3171-3181
-
-
Dickopf, S.1
Heyn, M.P.2
-
34
-
-
0027976593
-
Deconvolutions based on singular value decomposition and pseudo inverse: A guide for beginners
-
Hendler, R. W., and Shrager, R. I. (1994) Deconvolutions based on singular value decomposition and pseudo inverse: A guide for beginners, J. Biochem. Biophys. Methods 78, 1-33.
-
(1994)
J. Biochem. Biophys. Methods
, vol.78
, pp. 1-33
-
-
Hendler, R.W.1
Shrager, R.I.2
-
35
-
-
0026633609
-
Singular value decomposition: Application to analysis of experimental data
-
Henry, E. R., and Hofrichter, J. (1992) Singular value decomposition: Application to analysis of experimental data, Methods Enzymol. 210, 129-192.
-
(1992)
Methods Enzymol.
, vol.210
, pp. 129-192
-
-
Henry, E.R.1
Hofrichter, J.2
-
36
-
-
0344928455
-
Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism
-
Borucki, B., Otto, H., Rottwinkel, G., Hughes, J., Heyn, M. P., and Lamparter, T. (2003) Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism, Biochemistry 42, 13684-13697.
-
(2003)
Biochemistry
, vol.42
, pp. 13684-13697
-
-
Borucki, B.1
Otto, H.2
Rottwinkel, G.3
Hughes, J.4
Heyn, M.P.5
Lamparter, T.6
-
37
-
-
0037465835
-
Site-specific mutations provide new insights into the origin of pH effects and alternative spectral forms in the photoactive yellow protein from Halorhodospira halophila
-
Meyer, T. E., Devanathan, S., Woo, T., Getzoff, E. D., Tollin, G., and Cusanovich, M. A. (2003) Site-specific mutations provide new insights into the origin of pH effects and alternative spectral forms in the photoactive yellow protein from Halorhodospira halophila, Biochemistry 42, 3319-3325.
-
(2003)
Biochemistry
, vol.42
, pp. 3319-3325
-
-
Meyer, T.E.1
Devanathan, S.2
Woo, T.3
Getzoff, E.D.4
Tollin, G.5
Cusanovich, M.A.6
-
38
-
-
0034620544
-
Protonation states and pH titration in the photocycle of photoactive yellow protein
-
Demchuk, E., Genick, U. K., Woo, T. T., Getzoff, E. D., and Bashford, D. (2000) Protonation states and pH titration in the photocycle of photoactive yellow protein, Biochemistry 39, 1100-1113.
-
(2000)
Biochemistry
, vol.39
, pp. 1100-1113
-
-
Demchuk, E.1
Genick, U.K.2
Woo, T.T.3
Getzoff, E.D.4
Bashford, D.5
-
39
-
-
0027279276
-
Thermal equilibrium between the M and N intermediates in the photocycle of bacteriorhodopsin
-
Druckmann, S., Heyn, M. P., Lanyi, J. K., Ottolenghi, M., and Zimanyi, L. (1993) Thermal equilibrium between the M and N intermediates in the photocycle of bacteriorhodopsin, Biophys. J. 65, 1231-1234.
-
(1993)
Biophys. J.
, vol.65
, pp. 1231-1234
-
-
Druckmann, S.1
Heyn, M.P.2
Lanyi, J.K.3
Ottolenghi, M.4
Zimanyi, L.5
-
40
-
-
2642571008
-
Resonance Raman evidence for two conformations involved in the L intermediate of photoactive yellow protein
-
Unno, M., Kumauchi, M., Hamada, N., Tokunaga, F., and Yamauchi, S. (2004) Resonance Raman evidence for two conformations involved in the L intermediate of photoactive yellow protein, J. Biol. Chem. 279, 23855-23858.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 23855-23858
-
-
Unno, M.1
Kumauchi, M.2
Hamada, N.3
Tokunaga, F.4
Yamauchi, S.5
|