Resonance Raman evidence for two conformations involved in the L intermediate of photoactive yellow protein

Journal of Biological Chemistry

Volumn 279, Issue 23, 2004, Pages 23855-23858

  Unno, Masashi ^a   Kumauchi, Masato ^b   Hamada, Norio ^b   Tokunaga, Fumio ^b   Yamauchi, Seigo ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOPHORES; CONFORMATIONS; PH EFFECTS; PROBABILITY DENSITY FUNCTION; PROTEINS; RAMAN SPECTROSCOPY;

ISOTOPE EFFECTS; PHOTOACTIVE YELLOW PROTEINS (PYP); PHOTOCYCLE;

BIOCHEMISTRY;

CARBONYL DERIVATIVE; PHOTOACTIVE YELLOW PROTEIN;

ARTICLE; CHROMATOPHORE; DENSITY FUNCTIONAL THEORY; NONHUMAN; PH; PHOTOCHEMISTRY; PKA; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTON TRANSPORT; RAMAN SPECTROMETRY;

BACTERIAL PROTEINS; BINDING SITES; CHROMATIACEAE; HALORHODOSPIRA HALOPHILA; HYDROGEN BONDING; HYDROGEN-ION CONCENTRATION; KINETICS; LIGHT; MODELS, CHEMICAL; MOLECULAR CONFORMATION; MUTATION; PHENOL; PHOTORECEPTORS, MICROBIAL; PROTEIN CONFORMATION; PROTEINS; PROTONS; SPECTRUM ANALYSIS, RAMAN; VIBRATION;

EID: 2642571008     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.C400137200     Document Type: Article

References (26)

1. Meyer, T. E. (1985) Biochim. Biophys. Acta 806, 175-183
2. Pellequer, J.-L., Wager-Smith, K. A., Kay, S. A., and Getzoff, E. D. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 5884-5890
3. Borgstahl, G. E. O., Williams, D. R., and Getzoff, E. D. (1995) Biochemistry 34, 6278-6287
4. Kim, M., Mathies, R. A., Hoff, W. D., and Heningwerf, K. J. (1995) Biochemistry 34, 12669-12672
5. Devanathan, S., Brudler, R., Hessling, B., Woo, T. T., Gerwert, K., Getzoff, E. D., Cusanovich, M. A., and Tollin, G. (1999) Biochemistry 38, 13766-13772
6. El-Mashtoly, S. F., Unno, M., Kumauchi, M., Hamada, N., Fujiwara, K., Sasaki, J., Imamoto, Y., Kataoka, M., Tokunaga, F., and Yamauchi, S. (2004) Biochemistry 43, 2279-2287
7. Meyer, T. E., Yakali, E., Cusanovich, M. A., and Tollin, G. (1987) Biochemistry 26, 418-423
8. Hoff, W. D., Stokkum, I. H. M., van Ramesdonk, H. J., van Brederode, M. E., Brouwer, A. M., Fitch, J. C., Meyer, T. E., van Grondelle, R., and Hellingwerf, K. J. (1994) Biophys. J. 67, 1691-1705
9. Kroon, A. R., Hoff, W. D., Fennema, H. P. M., Gijen, J., Koomen, G.-J., Verhoeven, J. W., Crielaard, W., and Hellingwerf, K. J. (1996) J. Biol. Chem. 271, 31949-31956
10. Unno, M., Kumauchi, M., Sasaki, J., Tokunaga, F., and Yamauchi, S. (2002) Biochemistry 41, 5668-5674
11. Mihara, K., Hisatomi, O., Imamoto, Y., Kataoka, M., and Tokunaga, F. (1997) J. Biochem. (Tokyo) 121, 876-880
12. Unno, M., Kumauchi, M., Sasaki, J., Tokunaga, F., and Yamauchi, S. (2003) J. Phys. Chem. B 107, 2837-2845
13. Unno, M., Kumauchi, M., Sasaki, J., Tokunaga, F., and Yamauchi, S. (2000) J. Am. Chem. Soc. 122, 4233-4234
14. Chosrowjan, H., Taniguchi, S., Mataga, N., Unno, M., Yamauchi, S., Hamada, N., Kumauchi, M., and Tokunaga, F. (2004) J. Phys. Chem. B 108, 2686-2698
15. Ujj, L., Devanathan, S., Meyer, T. E., Cusanovich, M. A., Tollin, G., and Atkinson, G. H. (1998) Biophys. J. 75, 406-412
16. Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Zakrzewski, V. G., Montgomery, Jr., J. A., Stratmann, R. E., Burant, J. C., Dapprich, S., Millam, J. M., Daniels, A. D., Kudin, K. N., Strain, M. C., Farkas, O., Tomasi, J., Barone, V., Cossi, M., Cammi, R., Mennucci, B., Pomelli, C., Adamo, C., Clifford, S., Ochterski, J., Petersson, G. A., Ayala, P. Y., Cui, Q., Morokuma, K., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Cioslowski, J., Ortiz, J. V., Baboul, A. G., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Gomperts, R., Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Gonzalez, C., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Andres, J. L., Gonzalez, C., Head-Gordon, M., Replogle, E. S., and Pople, J. A. (1998) Gaussian 98, Revision A.9, Gaussian, Inc., Pittsburgh, PA
17. Onsager, L. (1936) J. Am. Chem. Soc. 58, 1486-1493
18. Pan, D., Philip, A., Hoff, W. D., and Mathies, R. A. (2004) Biophys. J. 86, 2374-2382
19. Voet, D., and Voet, J. G. (1990) Biochemistry, John Wiley & Sons, New York
20. Harada, I., and Takeuchi, H. (1981) in Spectroscopy of Biological Systems (Clark, R. J. H., and Hester, R. E., eds) Vol. 13, pp. 113-175, John Wiley & Sons, Chichester, UK
21. Xie, A., Kelemen, L., Hendriks, J., White, B. J., Heningwerf, K. J., and Hoff, W. D. (2001) Biochemistry 40, 1510-1517
22. Hendriks, J., van Stokkum, I. H. M., and Hellingwerf, K. J. (2003) Biophys. J. 84, 1180-1191
23. Genick, U., Soltis, S. M., Kuhn, P., Canestrelli, I. L., and Getzoff, E. D. (1998) Nature 392, 206-209
24. Imamoto, Y., Mihara, K., Hisatomi, O., Kataoka, M., Tokunaga, F., Bojkova, N., and Yoshihara, K. (1997) J. Biol. Chem. 272, 12905-12908
25. Brudler, R., Rammelsberg, R., Woo, T. T., Getzoff, E. D., and Gerwert, K. (2001) Nat. Struct. Biol. 8, 265-270
26. Genick, U. K., Devanathan, S., Meyer, T. E., Canestrelli, I. L., Williams, E., Cusanovich, M. A., Tollin, G., and Getzoff, E. D. (1997) Biochemistry 36, 8-14