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Volumn 57, Issue 1, 2006, Pages 139-148

Microeukaryotic diversity in the extreme environments of the Iberian Pyrite Belt: A comparison between universal and fungi-specific primer sets, temperature gradient gel electrophoresis and cloning

Author keywords

Extreme environments; Iberian Pyrite Belt; Microeukaryotes; Molecular cloning; Temperature gradient gel electrophoresis

Indexed keywords

CLONE; DNA; ELECTROKINESIS; FUNGUS; HEAVY METAL; RNA; YEAST;

EID: 33745021628     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2006.00098.x     Document Type: Article
Times cited : (30)

References (35)
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann RI Binder BJ Olson RJ Chisholm SW Devereux R Stahl DA 1990 Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919 1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 2942711218 scopus 로고    scopus 로고
    • Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)
    • Bass D Cavalier-Smith T 2004 Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). Int J Syst Evol Microbiol 54: 2393 2404.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2393-2404
    • Bass, D.1    Cavalier-Smith, T.2
  • 4
    • 0033771173 scopus 로고    scopus 로고
    • PCR primers that amplify fungal rRNA genes from environmental samples
    • Borneman J Hartin RJ 2000 PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66: 4356 4360.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4356-4360
    • Borneman, J.1    Hartin, R.J.2
  • 5
    • 0036527144 scopus 로고    scopus 로고
    • Analysis of internal transcribed spacer (ITS) regions of rRNA genes in fungal communities in a southeastern U.S. salt marsh
    • Buchan A Newell SY Moreta JIL Moran MA 2002 Analysis of internal transcribed spacer (ITS) regions of rRNA genes in fungal communities in a southeastern U.S. salt marsh. Microb Ecol 43: 329 340.
    • (2002) Microb Ecol , vol.43 , pp. 329-340
    • Buchan, A.1    Newell, S.Y.2    Moreta, J.I.L.3    Moran, M.A.4
  • 6
    • 0037298006 scopus 로고    scopus 로고
    • Testing the limits of biological tolerance to arsenic in a fungus isolated from the river Tinto
    • Cánovas D Duran C Rodriguez N Amils R de Lorenzo V 2003 Testing the limits of biological tolerance to arsenic in a fungus isolated from the river Tinto. Environ Microbiol 5: 133 138.
    • (2003) Environ Microbiol , vol.5 , pp. 133-138
    • Cánovas, D.1    Duran, C.2    Rodriguez, N.3    Amils, R.4    De Lorenzo, V.5
  • 7
    • 0023526239 scopus 로고
    • Estimating the population size for capture-recapture data with unequal catchability
    • Chao A 1987 Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43: 783 791.
    • (1987) Biometrics , vol.43 , pp. 783-791
    • Chao, A.1
  • 9
    • 33745024620 scopus 로고    scopus 로고
    • EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples. Version 7.5. University of Conneticut, CT.
    • Colwell RK 2005 EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples. Version 7.5. University of Conneticut, CT.
    • (2005)
    • Colwell, R.K.1
  • 10
    • 0037062470 scopus 로고    scopus 로고
    • Novel kingdom-level eukaryotic diversity in anoxic environments
    • Dawson SC Pace NR 2002 Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Nat Acad Sci USA 99: 8324 8329.
    • (2002) Proc Nat Acad Sci USA , vol.99 , pp. 8324-8329
    • Dawson, S.C.1    Pace, N.R.2
  • 11
    • 0034672742 scopus 로고    scopus 로고
    • Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis
    • van Elsas JD Duarte GF Keijzer-Wolters A Smit E 2000 Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Meth 43: 133 151.
    • (2000) J Microbiol Meth , vol.43 , pp. 133-151
    • Van Elsas, J.D.1    Duarte, G.F.2    Keijzer-Wolters, A.3    Smit, E.4
  • 12
    • 8844258036 scopus 로고    scopus 로고
    • Application of temperature gradient gel electrophoresis to the study of yeast diversity in the estuary of the Tagus River, Portugal
    • Gadanho M Sampaio JP 2004 Application of temperature gradient gel electrophoresis to the study of yeast diversity in the estuary of the Tagus River, Portugal. FEMS Yeast Res 5: 253 261.
    • (2004) FEMS Yeast Res , vol.5 , pp. 253-261
    • Gadanho, M.1    Sampaio, J.P.2
  • 13
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • Gardes M Bruns TD 1993 ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113 118.
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 14
    • 16544394490 scopus 로고    scopus 로고
    • Characterization of protistan assemblages in the Ross sea, Antarctica, by denaturing gradient gel electrophoresis
    • Gast RJ Dennett MR Caron DA 2004 Characterization of protistan assemblages in the Ross sea, Antarctica, by denaturing gradient gel electrophoresis. Appl Environ Microbiol 70: 2028 2037.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2028-2037
    • Gast, R.J.1    Dennett, M.R.2    Caron, D.A.3
  • 15
    • 0023958997 scopus 로고
    • Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
    • Giovannoni SJ De Long EF Olsen GJ Pace NR 1988 Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol 170: 720 726.
    • (1988) J Bacteriol , vol.170 , pp. 720-726
    • Giovannoni, S.J.1    De Long, E.F.2    Olsen, G.J.3    Pace, N.R.4
  • 18
    • 0033050123 scopus 로고    scopus 로고
    • Detritus-dependent development of the microbial community in an experimental system: Qualitative analysis by denaturing gradient gel electrophoresis
    • van Hannen EJ Mooij W van Agterveld MP Gons HJ Laanbroek HJ 1999 Detritus-dependent development of the microbial community in an experimental system: qualitative analysis by denaturing gradient gel electrophoresis. Appl Environ Microbiol 65: 2478 2484.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2478-2484
    • Van Hannen, E.J.1    Mooij, W.2    Van Agterveld, M.P.3    Gons, H.J.4    Laanbroek, H.J.5
  • 19
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP Ronquist FR 2001 MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754 755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.R.2
  • 21
    • 0032976397 scopus 로고    scopus 로고
    • Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget B Simon DL 1999 Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol 16: 750 759.
    • (1999) Mol Biol Evol , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.L.2
  • 22
    • 0034997171 scopus 로고    scopus 로고
    • Microbial community composition and ecology of an acidic aquatic environment: The Tinto River, Spain
    • López-Archilla AI Marin I Amils R 2001 Microbial community composition and ecology of an acidic aquatic environment: the Tinto River, Spain. Microb Ecol 41: 20 35.
    • (2001) Microb Ecol , vol.41 , pp. 20-35
    • López-Archilla, A.I.1    Marin, I.2    Amils, R.3
  • 23
    • 0036727272 scopus 로고    scopus 로고
    • Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean
    • Massana R Guillou L Díez B Pedrós-Alió C 2002 Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean. Appl Environ Microbiol 68: 4554 4558.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4554-4558
    • Massana, R.1    Guillou, L.2    Díez, B.3    Pedrós-Alió, C.4
  • 24
    • 0034767175 scopus 로고    scopus 로고
    • Comparative denaturing gradient gel electrophoresis of fungal communities associated with whole plant corn silage
    • May LA Smiley B Schmidt MG 2001 Comparative denaturing gradient gel electrophoresis of fungal communities associated with whole plant corn silage. Can J Microbiol 47: 829 841.
    • (2001) Can J Microbiol , vol.47 , pp. 829-841
    • May, L.A.1    Smiley, B.2    Schmidt, M.G.3
  • 25
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L Elwood HJ Stickel S Sogin ML 1988 The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491 499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 26
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • Moon-van der Staay SY De Wachter R Vaulot D 2001 Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607 610.
    • (2001) Nature , vol.409 , pp. 607-610
    • Moon-Van Der Staay, S.Y.1    De Wachter, R.2    Vaulot, D.3
  • 27
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G De Waal EC Uitterlinden AG 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695 700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 28
    • 0037545765 scopus 로고    scopus 로고
    • Determining diversity of freshwater fungi on decaying leaves: Comparison of traditional and molecular approaches
    • Nikolcheva LG Cockshutt AM Bärlocher F 2003 Determining diversity of freshwater fungi on decaying leaves: comparison of traditional and molecular approaches. Appl Environ Microbiol 69: 2548 2554.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2548-2554
    • Nikolcheva, L.G.1    Cockshutt, A.M.2    Bärlocher, F.3
  • 29
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz MF Cavanaugh CM 1998 Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64: 3724 3730.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 30
    • 0033014645 scopus 로고    scopus 로고
    • Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis
    • Smit E Leeflang P Glandorf B van Elsas JD Wernars K 1999 Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Appl Environ Microbiol 65: 2614 2621.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2614-2621
    • Smit, E.1    Leeflang, P.2    Glandorf, B.3    Van Elsas, J.D.4    Wernars, K.5
  • 32
    • 0038221066 scopus 로고    scopus 로고
    • Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments
    • Stoeck T Epstein S 2003 Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Appl Environ Microbiol 69: 2657 2663.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2657-2663
    • Stoeck, T.1    Epstein, S.2
  • 33
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT Giovannoni SJ 1996 Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625 630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.