Rangewide molecular structuring in the Utah sucker (Catostomus ardens)

Molecular Ecology

Volumn 15, Issue 8, 2006, Pages 2223-2238

  Mock, K E ^a   Evans, R P ^b   Crawford, M ^c   Cardall, B L ^a   Janecke, S U ^a,d   Miller, M P ^a  

^a UTAH STATE UNIVERSITY   (United States)

^b BRIGHAM YOUNG UNIVERSITY   (United States)

^c US Fish and Wildlife Service   (United States)

^d ROCKY MOUNTAIN RESEARCH STATION   (United States)

Author keywords

AFLP; Bonneville Basin; Catostomus ardens; Chasmistes liorus; June sucker; Utah sucker

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CYPRINIFORMES; DNA SEQUENCE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; HYBRIDIZATION; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; POPULATION GENETICS; UNITED STATES;

ANIMALS; CYPRINIFORMES; DNA, MITOCHONDRIAL; GENETIC MARKERS; GENETICS, POPULATION; HYBRIDIZATION, GENETIC; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SEQUENCE ANALYSIS, DNA; UTAH; VARIATION (GENETICS);

CATOSTOMUS ARDENS; CHASMISTES LIORUS; CYPRINIDAE;

EID: 33745020988     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.02932.x     Document Type: Article

References (106)

1. Antevs E 1948 The Great Basin, with special emphasis on glacial and post-glacial times. III. Climatic changes and pre-white man. University of Utah Bulletin, 38, 168 191.
2. Armstrong PA Ehlers TA Chapman DS Farley KA Kamp PJJ 2003 Exhumation of the central Wasatch Mountains: 1. Patterns and timing deduced from low-temperature thermochronometry data. Journal of Geophysical Research, 108, 2172.
3. Armstrong PA Taylor AR Ehlers TA 2004 Is the Wasatch fault footwall (Utah, United States) segmented over million-year time scales? Geology, 32, 385 388.
4. Barton NH Keightley PD 2002 Understanding quantitative genetic variation. Nature Reviews Genetics, 3, 11 21.
5. Benham J 2001) genographer 1.6. Computer software distributed by author ( http://hordeum.msu.montana.edu/genographer).
6. Blackledge TA Gillespie RG 2004 Convergent evolution of behavior in an adaptive radiation of Hawaiian web-building spiders. Proceedings of the National Academy of Science, USA, 101, 16228 16233.
7. Bouchard DP Kaufman DS Hochberg A Quade J 1998 Quaternary history of the Thatcher Basin, Idaho, reconstructed from the 87Sr/86Sr and amino acid composition of lacustrine fossils: implications for the diversion of the Bear River into the Bonneville Basin. Palaeogeography, Palaeoclimatology, Palaeoecology, 141, 95 114.
8. Bowen BW 1999 Preserving genes, species, or ecosystems? Healing the fractured foundations of conservation policy. Molecular Ecology, 8, S5 S10.
9. Bright RC 1963 Pleistocene Lakes Thatcher and Bonneville, southeastern Idaho PhD Dissertation, University of Minnesota, Minnesota.
10. Butlin RK Tregenza T 1998 Levels of genetic polymorphism: marker loci versus quantitative traits. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 353, 187 198.
11. Chow S Kishino H 1995 Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): inconsistent implications from morphology, nuclear, and mitochondrial genomes. Journal of Molecular Evolution, 41, 741 748.
12. Clement M Posada D Crandall K 2000 tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1660.
13. Cook AG 2001 A review of the comparative morphology and systematics of Utah Lake suckers (Catostomidae). Journal of Zoology, 254, 293 308.
14. Cope ED 1872 On the Tertiary coal and fossils of Osino, Nevada. Proceedings of the American Philosophical Society, 12, 475 481.
15. Crandall KA Bininda-Emonds ORP Mace GM Wayne RK 2000 Considering evolutionary processes in conservation biology. Trends in Ecology & Evolution, 15, 290 295.
16. Croucher PJP Oxford GS Searle JB 2004 Mitochondrial differentiation, introgression, and phylogeny of species in the Tegenaria atrica group (Aranae: Agelenidae). Biological Journal of the Linnean Society, 81, 79 89.
17. Currey DR 1990 Quaternary paleolakes in the evolution of semidesert basins, with special emphasis on Lake Bonneville and the Great Basin, U.S.A. Palaeogeography, Palaeoclimatology, Palaeoecology, 76, 241 286.
18. Currey DR James SR 1982 Paleoenvironments of the northeastern Great Basin and northeastern basin rim region: a review of geological and biological evidence. In : Man and Environment in the Great Basin (eds Madsen DB O'Connell J, Paper 2. pp. 27 52. Society for American Archaeology, Washington, D.C.
19. Currey DR Oviatt CG 1985 Durations, average rates, and probable causes of Lake Bonneville expansions, still-stands, and contractions during the last deep-lake cycle, 32 000-10 000 years ago. In : Problems of and Prospects for Predicting Great Salt Lake Levels, Papers from a Conference Held in Salt Lake City, March 26-28, 1985 (eds Kay PA Diaz HF, pp. 9 24. Center for Public Affairs and Administration, University of Utah, Salt Lake City, Utah.
20. Currey DR Atwood G Mabey DR 1984 Major Levels of Great Salt Lake and Lake Bonneville. Map 73. State of Utah Department of Natural Resources, Utah Geological and Mineral Survey, Utah.
21. Davis OK 1998 Palynological evidence for vegetation cycles in a 1.5 million year pollen record from the Great Salt Lake, Utah, USA. Palaeogeography, Palaeoclimatology and Palaeoecology, 138, 175 185.
22. Dowling TE Secor CL 1997 The role of hybridization and introgression in the diversification of animals. Annual Review of Ecology and Systematics, 28, 593 619.
23. Dowling TE Tibbets CA Minckley WL Smith GR 2002 Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia, 665 678.
24. Echelle AA Carson EW Echelle AF Van Den Bussche RA Dowling TE Meyer A 2005 Historical biogeography of the new-world pupfish genus Cyprinidon (Teleostei: Cyprinodontidae). Copeia, 320 339.
25. Eddy S Underhill JC 1978) How to know the freshwater fishes. William C. Brown Company Publishers, Dubuque, Iowa.
26. Ehlers TA Willett SD Armstrong PA Chapman DS 2003 Exhumation of the central Wasatch Mountains, Utah: 2. Thermokinematics of exhumation, erosion, and thermochronometer interpretation. Journal of Geophysical Research, 108, 2173.
27. Excoffier L Smouse P Quattro J 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
28. Farias IP Orti G Meyer A 2000 Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes. Journal of Experimental Zoology, 288, 76 92.
29. Fisher RA 1954 Statistical Methods for Research Workers, 12th edn. Oliver and Boyd, Edinburgh.
30. Gilbert GK 1890 Lake Bonneville. US Geological Survey Monograph 1, Washington, D.C.
31. Harris PM Mayden RL 2001 Phylogenetic relationships of major clades of Catostomidae (Teleostei: Cypriniformes) as inferred from mitochondrial SSU and LSU rDNA sequences. Molecular Phylogenetics and Evolution, 20, 225 237.
32. Hart WS Quade J Madsen DB Kaufman DS Oviatt CG 2004 The Sr-87/Sr-86 ratios of lacustrine carbonates and lake-level history of the Bonneville paleolake system. Geological Society of America Bulletin, 116, 1107 1119.
33. Hendry AP Vamosi SM Latham SJ Heilbuth JC Day T 2000 Questioning species realities. Conservation Genetics, 1, 67 76.
34. Hollar LJ Springer MS 1997 Old world fruitbat phylogeny: evidence for convergent evolution and an endemic African clade. Proceedings of the National Academy of Science, USA, 94, 5716 5721.
35. Hubbs CL 1955 Hybridation between fish species in nature. Systematic Zoology, 4, 1 20.
36. Hubbs CL Hubbs LC 1947 Natural hybrids between two species of catostomid fishes. Papers of the Michigan Academy of Science, Arts and Letters, 31, 147 167.
37. Hubbs CL Miller RR 1948 The zoological evidence: correlation between fish distribution and hydrographic history in the desert basins of western United States. Contributions of the Scripps Institution of Oceanography, Manuscript Number 36.
38. Jarrett RD Malde HE 1987 Palaeodischarge of the late Pleistocene Bonneville flood, Snake River, Idaho, computed from new evidence. Geological Society of America Bulletin, 99, 126 134.
39. Johnson JB 2002 Evolution after the flood: phylogeography of the desert fish Utah chub. Evolution, 56, 948 960.
40. Johnson JB Jordan S 2000 Phylogenetic divergence in leatherside chub (Gila copei) inferred from mitochondrial cytochrome b sequences. Molecular Ecology, 9, 1029 1035.
41. Johnson JB Dowling TE Belk MC 2004 Neglected taxonomy of rare desert fishes: congruent evidence for two species of leatherside chub. Systematic Biology, 53, 841 855.
42. Jordan D Gilbert C 1880) Department of the Interior, Proceedings of the United States National Museum: Volume III p. 459.
43. Jukes TH Cantor CR 1969 Evolution of protein molecules. In : Mammalian Protein Metabolism (ed. Munro HN, pp. 21 132. Academic Press, New York.
44. Kowalewska A Cohen AS 1998 Reconstruction of paleoenvironments of the Great Salt Lake Basin during the late Cenozoic. Journal of Paleolimnology, 20, 381 407.
45. Kumar S Tamura K Jakobsen IB Nei M 2001 mega2: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244 1245.
46. Laabs BJC Kaufman DS 2003 Quaternary highstands in Bear Lake Valley, Utah and Idaho. Geological Society of America Bulletin, 115, 463 478.
47. Li T 1999 Genetics of endangered species Chasmistes liorus (June sucker). PhD Thesis, Brigham Young University.
48. Luikart G England PR Tallmon D Jordan S Taberlet P 2003 The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics, 4, 981 994.
49. Lynch M Milligan BG 1994 Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91 99.
50. Lynch M Pfrender M Spitze K et al. 1999 The quantitative and genetic architecture of a subdivided species. Evolution, 53, 100 110.
51. Machette MN Personius SF Nelson AR 1992 Paleoseismology of the Wasatch fault zone: a summary of recent investigations, interpretations, and conclusions. In : Assessment of Regional Earthquake Hazards and Risk Along the Wasatch Front, Utah eds Gori PL Hays WW US Geological Survey Professional Paper. 1500. Pages A1 A71.
52. Manly BF 1991 Randomization and Monte Carlo Methods in Biology. Chapman & Hall, New York.
53. McCoy WD 1987 Quaternary aminostratigraphy of the Bonneville Basin, western United States. Geological Society of America Bulletin, 98, 99 112.
54. McKay JK Latta RG 2002 Adaptive population divergence: markers, QTL and traits. Trends in Ecology & Evolution, 17, 285 291.
55. Merilä J Crnokrak P 2001 Comparison of genetic differentiation at marker loci and quantitative traits. Journal of Evolutionary Biology, 14, 892 903.
56. Miller MP 1997) Tools for population genetic analysis (tfpga), 1.3: a Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author ( http://bioweb.usu.edu/mpmbio).
57. Miller RR Smith GR 1980 Letter to Kendall Nelson from the Museum of Zoology. University of Michigan, Ann Arbor, Michigan.
58. Miller RR Smith GR 1981 Distribution and evolution of Chasmistes (Pisces: Catostomidae) in western North America). Occasional Papers of the Museum of Zoology, University of Michigan, 696, 1 46.
59. Miller RR Williams JD Williams JE 1989 Extinctions of North American fishes during the past century. Fisheries, 14, 22 38.
60. Minkley WL Hendrickson DA Bond CE 1986 Geography of Western North American freshwater fishes: description and relationships to intracontinental tectonism. In : The Zoogeography of North American Freshwater Fishes (eds Hocutt CH Wiley EO, pp. 519 614. John Wiley and Sons, New York.
61. Mock KE Miller MP 2005 Patterns of molecular diversity in naturally occurring and refugium populations of the least chub (Iotichthys phlegethontis). Transactions of the American Fisheries Society, 134, 267 278.
62. Mock KE Brim-Box JC Miller MP Downing ME Hoeh WR 2004 Genetic diversity and divergence among freshwater mussel (Anodonta) populations in the Bonneville Basin of Utah. Molecular Ecology, 13, 1085 1098.
63. Montillo ED 1968 A study of prehistoric settlement patterns of the Provo area in central Utah. MS Thesis, Brigham Young University, Provo, Utah.
64. Moritz C 1994 Defining 'evolutionarily significant units' for conservation. Trends in Ecology & Evolution, 9, 373 375.
65. Moritz C 2002 Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biology, 51, 238 254.
66. Mullenbach R Lagoda PL Welter C 1989 An efficient salt-chloroform extraction of DNA from blood and tissues. Trends in Genetics, 5, 391.
67. Nei M 1978 Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
68. Nei M Kumar S 2000 Molecular Evolution and Phylogenetics. Oxford University Press, New York, USA.
69. Østbye K Næsje TF Bernatchez Sandlund OT Hindar K 2005 Morphological divergence and origin of sympatric populations of European whitefish (Coregonus lavaretus L.) in Lake Femund, Norway. Journal of Evolutionary Biology, 18, 683 702.
70. Oviatt CG Currey DR Sack D 1992 Radiocarbon chronology of Lake Bonneville, Eastern Great Basin, USA. Palaeogeography, Palaeoclimatology, Palaeoecology, 99, 225 241.
71. Oviatt CG Thompson RS Kaufman DS Bright JE Forester RM 1999 Reinterpretation of the Burmester core, Bonneville basin, Utah. Quaternary Research, 52, 180 184.
72. Page LM Burr BM 1991 A Field Guide to Freshwater Fishes: North America North of Mexico. Houghton Mifflin Company, Boston.
73. Parry WT Bruhn RL 1987 Fluid inclusion evidence for minimum 11 km vertical offset on the Wasatch fault, Utah. Geology, 15, 67 70.
74. Potter D LaJeunesse TC Saunders GW Andersen RA 1997 Convergent evolution masks extensive biodiversity among marine coccoid picoplankton. Biodiversity and Conservation, 6, 99 107.
75. Rader RB Belk MC Shiozawa DK Crandall KA 2005 Empirical test for ecological exchangeability. Animal Conservation, 8, 1 9.
76. Ramon ML Lobel PS Sorenson MD 2003 Lack of mitochondrial genetic structure in hamlets (Hypoplectrus spp.): recent speciation or ongoing hybridization? Molecular Ecology, 12, 2975 2980.
77. Raymond ML Rousset F 1995 An exact test for population differentiation. Evolution, 49, 1280 1283.
78. Redenbach Z Taylor EB 2002 Evidence for historical introgression along a contact zone between two species of char (Pisces: Salmonidae) in northwestern North America. Evolution, 56, 1021 1035.
79. Reed DH Frankham R 2001 How closely related are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution, 55, 1095 1103.
80. Rohlf FJ 2002 ntsyspc: Numerical Taxonomy System, Version 2.10t. Exeter Publishing, Ltd., New York.
81. Rûber L Adams DC 2001 Evolutionary convergence of body shape and trophic morphology in cichlids from Lake Tanganyika. Journal of Evolutionary Biology, 14, 325 332.
82. Rûber L Meyer A Sturmbauer C Verheyen E 2002 Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression. Molecular Ecology, 10, 1207 1225.
83. Saint-Laurent R Legault M Bernatchez L 2003 Divergent selection maintains adaptive differentiation despite high gene flow between sympatric rainbow smelt ecotypes (Osmerus mordax Mitchill). Molecular Ecology, 12, 315 330.
84. Schneider S Kueffer J-M Roessli D Excoffier L 1996) arlequin, a software package for population genetics. Genetics and Biometry Laboratory, Department Anthropology, University Geneva, Geneva.
85. Sigler WF Sigler JW 1987 Fishes of the Great Basin: a Natural History. University of Nevada Press, Nevada.
86. Sigler WF Sigler JW 1996 Fishes of Utah. University of Utah Press, Salt Lake City, Utah.
87. Sites JW Jr., Marshall JC 2003 Delimiting species: a Renaissance issue in systematic biology. Trends in Ecology & Evolution, 18, 462 470.
88. Smith GR 1966 Distribution and evolution of North American catostomid fishes of the subgenus Pantosteus, genus Catostomus. Miscellaneous Publications of the University of Michigan Museum of Zoology, 129, 1 132.
89. Smith GR 1978 Biogeography of intermountain fishes. Great Basin Naturalist Memoirs, 2, 17 42.
90. Smith GR 1992 Phylogeny and biogeography of the Catostomidae, Freshwater Fishes of North America and Asia. In : Systematics, Historical Ecology and North American Freshwater Fishes (ed. Mayden RL, pp. 778 826. Stanford University Press, California.
91. Smith GR Dowling TE Gobalet KW Lugaski T Shiozawa DK Evans RP 2002 Biogeography and timing of evolutionary events among Great Basin fishes. In : Great Basin Aquatic Systems History (eds Hershler R Madsen DB Currey DR. Smithsonian Contributions to the Earth Sciences, 33, 175 234.
92. Snyder DE Muth RT 1988) Description and Identification of June, Utah, and Mountain Sucker Larvae and Early Juveniles. Publication no. 88-8. State of Utah Natural Resources Wildlife Resources, Utah.
93. Sokal R Rohlf FJ 1995 Biometry, 3rd edn. WH Freeman and Co., New York.
94. Sota T Ishikawa R Ujie M Kusumoto F Vogler P 2001 Extensive trans-species mitochondrial polymorhisms in the carabid beetles Carabus subgenus Ohmopterus caused by repeated introgressive hybridization. Molecular Ecology, 10, 2833 2847.
95. Sullivan JP Lavoué S Arnegard ME Hopkins CD 2004 AFLPs resolve phylogeny and reveal mitochondrial introgression within a species flock of African electric fish (Mormyroidea: Teleostei). Evolution, 58, 825 841.
96. Tajima F 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437 460.
97. Tanner VM 1936 A study of the fishes of Utah. Utah Academy of Sciences, Arts, and Letters, 13, 155 183.
98. Taylor EB 1999 Species pairs of north temperate freshwater fishes: evolution, taxonomy, and conservation. Reviews in Fish Biology and Fisheries, 9, 299 324.
99. Teshima H Davison A Kuwahara Y et al. 2003 The evolution of extreme shell shape variation in the land snail Ainohelix editha: a phylogeny and hybrid zone analysis. Molecular Ecology, 12, 1869 1878.
100. Tranah GJ May B 2006 Patterns of intra- and interspecies genetic diversity in Klamath River Basin suckers. Transactions of the American Fisheries Society, 135, 306 316.
101. Turgeon JL Bernatchez L 2001 Clinal variation at microsatellite loci reveals historical secondary intergradation between glacial races of Coregonus artedi (Teleostei: Coregoninae). Evolution, 11, 2274 2286.
102. Vos P Hogers R Bleeker M et al. 1995 AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407 4414.
103. Waters JM White RWG 1997 Molecular phylogeny and biogeography of the Tasmanian and New Zealand mudfishes (Salmoniformes: Galaxiidae). Australian Journal of Zoology, 45, 39 48.
104. Weir BS Cockerham CC 1984 Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
105. Wilson K Hepworth R Rasmussen J 2002) Brood stock development through collection of June sucker eggs and larvae from the Provo River. Report to the June Sucker Recovery Program, Project Number: IV.02.01, Utah Division of Wildlife Resources, Utah.
106. Wu J Krutovskii KV Strauss SH 1998 Abundant mitochondrial genome diversity, population differentiation, and convergent evolution in pines. Genetics, 150, 1605 1614.