메뉴 건너뛰기




Volumn 85, Issue 1, 2006, Pages 6-10

Maps, books and other metaphors for systems biology

Author keywords

Computational biology; Metaphors; Molecular biology; Systems biology

Indexed keywords

BIOLOGICAL ANALYSIS; GENOMICS; INFORMATION SYSTEM; MAP; MOLECULAR ANALYSIS; TEXTBOOK;

EID: 33744940041     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2006.02.007     Document Type: Short Survey
Times cited : (13)

References (61)
  • 1
    • 19344372271 scopus 로고    scopus 로고
    • Systems biology: its practice and challenges
    • Aderem A. Systems biology: its practice and challenges. Cell 121 (2005) 511-513
    • (2005) Cell , vol.121 , pp. 511-513
    • Aderem, A.1
  • 2
    • 0043238093 scopus 로고    scopus 로고
    • From genes to genomes: universal scale-invariant properties of microbial chromosome organisation
    • Audit B., and Ouzounis C.A. From genes to genomes: universal scale-invariant properties of microbial chromosome organisation. J. Mol. Biol. 332 (2003) 617-633
    • (2003) J. Mol. Biol. , vol.332 , pp. 617-633
    • Audit, B.1    Ouzounis, C.A.2
  • 3
    • 0035812839 scopus 로고    scopus 로고
    • Evolving genomic metaphors: a new look at the language of DNA
    • Avise J.C. Evolving genomic metaphors: a new look at the language of DNA. Science 294 (2001) 86-87
    • (2001) Science , vol.294 , pp. 86-87
    • Avise, J.C.1
  • 4
    • 0347659256 scopus 로고    scopus 로고
    • Who-or what-are the rats (and mice) in the laboratory
    • Birke L. Who-or what-are the rats (and mice) in the laboratory. Soc. Anim. 11 (2003) 207-224
    • (2003) Soc. Anim. , vol.11 , pp. 207-224
    • Birke, L.1
  • 6
    • 2342467939 scopus 로고    scopus 로고
    • Do the print media "hype" genetic research? A comparison of newspaper stories and peer-reviewed research papers
    • Bubela T.M., and Caulfield T.A. Do the print media "hype" genetic research? A comparison of newspaper stories and peer-reviewed research papers. Cmaj 170 (2004) 1399-1407
    • (2004) Cmaj , vol.170 , pp. 1399-1407
    • Bubela, T.M.1    Caulfield, T.A.2
  • 7
    • 84888018338 scopus 로고    scopus 로고
    • Bioinformatics in medical practice: what is necessary for a hospital?
    • Burkle T., Hain T., Hossain H., Dudeck J., and Domann E. Bioinformatics in medical practice: what is necessary for a hospital?. Medinfo. 10 (2001) 951-955
    • (2001) Medinfo. , vol.10 , pp. 951-955
    • Burkle, T.1    Hain, T.2    Hossain, H.3    Dudeck, J.4    Domann, E.5
  • 9
    • 0031918954 scopus 로고    scopus 로고
    • Twisting the ladder of science: pure and practical goals in twentieth-century studies of inheritance
    • Cooke K.J. Twisting the ladder of science: pure and practical goals in twentieth-century studies of inheritance. Endeavour 22 (1998) 12-16
    • (1998) Endeavour , vol.22 , pp. 12-16
    • Cooke, K.J.1
  • 10
    • 18844409515 scopus 로고    scopus 로고
    • The book of life
    • Copland P. The book of life. J. Med. Ethics 31 (2005) 278-279
    • (2005) J. Med. Ethics , vol.31 , pp. 278-279
    • Copland, P.1
  • 11
    • 3042713914 scopus 로고    scopus 로고
    • Genetics: the not-so-new new thing
    • Davis D.S. Genetics: the not-so-new new thing. Perspect. Biol. Med. 47 (2004) 430-440
    • (2004) Perspect. Biol. Med. , vol.47 , pp. 430-440
    • Davis, D.S.1
  • 12
    • 0035219917 scopus 로고    scopus 로고
    • What is science good for?
    • 178
    • Dawkins R. What is science good for?. Harv. Bus. Rev. 79 (2001) 159-163 178
    • (2001) Harv. Bus. Rev. , vol.79 , pp. 159-163
    • Dawkins, R.1
  • 14
    • 0035829512 scopus 로고    scopus 로고
    • The tracks of thought
    • Draaisma D. The tracks of thought. Nature 414 (2001) 153
    • (2001) Nature , vol.414 , pp. 153
    • Draaisma, D.1
  • 15
    • 0043163718 scopus 로고    scopus 로고
    • Protein families and TRIBES in genome sequence space
    • Enright A.J., Kunin V., and Ouzounis C.A. Protein families and TRIBES in genome sequence space. Nucleic Acids Res. 31 (2003) 4632-4638
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4632-4638
    • Enright, A.J.1    Kunin, V.2    Ouzounis, C.A.3
  • 16
    • 0037210227 scopus 로고    scopus 로고
    • The social life of genes: privacy, property and the new genetics
    • Everett M. The social life of genes: privacy, property and the new genetics. Soc. Sci. Med. 56 (2003) 53-65
    • (2003) Soc. Sci. Med. , vol.56 , pp. 53-65
    • Everett, M.1
  • 17
    • 12244283680 scopus 로고    scopus 로고
    • Modeling the percolation of annotation errors in a database of protein sequences
    • Gilks W.R., Audit B., De Angelis D., Tsoka S., and Ouzounis C.A. Modeling the percolation of annotation errors in a database of protein sequences. Bioinformatics 18 (2002) 1641-1649
    • (2002) Bioinformatics , vol.18 , pp. 1641-1649
    • Gilks, W.R.1    Audit, B.2    De Angelis, D.3    Tsoka, S.4    Ouzounis, C.A.5
  • 18
    • 0034151276 scopus 로고    scopus 로고
    • Invisible enemies: bacteriology and the language of politics in imperial Germany
    • Gradmann C. Invisible enemies: bacteriology and the language of politics in imperial Germany. Sci. Context 13 (2000) 9-30
    • (2000) Sci. Context , vol.13 , pp. 9-30
    • Gradmann, C.1
  • 19
    • 0037660387 scopus 로고    scopus 로고
    • Reading maps of the genes: interpreting the spatiality of genetic knowledge
    • Hall E. Reading maps of the genes: interpreting the spatiality of genetic knowledge. Health Place 9 (2003) 151-161
    • (2003) Health Place , vol.9 , pp. 151-161
    • Hall, E.1
  • 21
    • 0029435206 scopus 로고
    • Who wrote the book of life? Information and the transformation of molecular biology
    • Kay L.E. Who wrote the book of life? Information and the transformation of molecular biology. Sci. Context 8 (1945-1955) 609-634
    • (1945) Sci. Context , vol.8 , pp. 609-634
    • Kay, L.E.1
  • 22
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano H. Computational systems biology. Nature 420 (2002) 206-210
    • (2002) Nature , vol.420 , pp. 206-210
    • Kitano, H.1
  • 23
    • 0035984474 scopus 로고    scopus 로고
    • Grand metaphors of biology in the genome era
    • Konopka A.K. Grand metaphors of biology in the genome era. Comput. Chem. 26 (2002) 397-401
    • (2002) Comput. Chem. , vol.26 , pp. 397-401
    • Konopka, A.K.1
  • 24
    • 13844306368 scopus 로고    scopus 로고
    • Measuring genome conservation across taxa: divided strains and united kingdoms
    • Kunin V., Ahren D., Goldovsky L., Janssen P., and Ouzounis C.A. Measuring genome conservation across taxa: divided strains and united kingdoms. Nucleic Acids Res. 33 (2005) 616-621
    • (2005) Nucleic Acids Res. , vol.33 , pp. 616-621
    • Kunin, V.1    Ahren, D.2    Goldovsky, L.3    Janssen, P.4    Ouzounis, C.A.5
  • 25
    • 22244450083 scopus 로고    scopus 로고
    • The net of life: reconstructing the microbial phylogenetic network
    • Kunin V., Goldovsky L., Darzentas N., and Ouzounis C.A. The net of life: reconstructing the microbial phylogenetic network. Genome Res. 15 (2005) 954-959
    • (2005) Genome Res. , vol.15 , pp. 954-959
    • Kunin, V.1    Goldovsky, L.2    Darzentas, N.3    Ouzounis, C.A.4
  • 26
    • 3042593155 scopus 로고    scopus 로고
    • Functional evolution of the yeast protein interaction network
    • Kunin V., Pereira-Leal J.B., and Ouzounis C.A. Functional evolution of the yeast protein interaction network. Mol. Biol. Evol. 21 (2004) 1171-1176
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1171-1176
    • Kunin, V.1    Pereira-Leal, J.B.2    Ouzounis, C.A.3
  • 27
    • 0026496992 scopus 로고
    • Led (astray) by genetic maps: the cartography of the human genome and health care
    • Lippman A. Led (astray) by genetic maps: the cartography of the human genome and health care. Soc. Sci. Med. 35 (1992) 1469-1476
    • (1992) Soc. Sci. Med. , vol.35 , pp. 1469-1476
    • Lippman, A.1
  • 28
    • 0029874780 scopus 로고    scopus 로고
    • 'Gloom in the society of enzymes': on the nature of biological information
    • Marijuan P.C. 'Gloom in the society of enzymes': on the nature of biological information. Biosystems 38 (1996) 163-171
    • (1996) Biosystems , vol.38 , pp. 163-171
    • Marijuan, P.C.1
  • 29
    • 16344379029 scopus 로고    scopus 로고
    • Can ecology help genomics: the genome as ecosystem?
    • Mauricio R. Can ecology help genomics: the genome as ecosystem?. Genetica 123 (2005) 205-209
    • (2005) Genetica , vol.123 , pp. 205-209
    • Mauricio, R.1
  • 30
    • 0032765827 scopus 로고    scopus 로고
    • The use of models and metaphors in developmental biology
    • McLachlan J.C. The use of models and metaphors in developmental biology. Endeavour 23 (1999) 51-55
    • (1999) Endeavour , vol.23 , pp. 51-55
    • McLachlan, J.C.1
  • 32
    • 10844287138 scopus 로고    scopus 로고
    • Genomics: shifts in metaphorical landscape between 2000 and 2003
    • Nerlich B., and Hellsten I. Genomics: shifts in metaphorical landscape between 2000 and 2003. New Genet. Soc. 23 (2003) 255-268
    • (2003) New Genet. Soc. , vol.23 , pp. 255-268
    • Nerlich, B.1    Hellsten, I.2
  • 33
    • 0037265311 scopus 로고    scopus 로고
    • Metaphors in behavioral genetics
    • Nordgren A. Metaphors in behavioral genetics. Theor. Med. Bioeth. 24 (2003) 59-77
    • (2003) Theor. Med. Bioeth. , vol.24 , pp. 59-77
    • Nordgren, A.1
  • 34
    • 0036210842 scopus 로고    scopus 로고
    • Bioinformatics and the theoretical foundations of molecular biology
    • Ouzounis C. Bioinformatics and the theoretical foundations of molecular biology. Bioinformatics 18 (2002) 377-378
    • (2002) Bioinformatics , vol.18 , pp. 377-378
    • Ouzounis, C.1
  • 36
    • 0029935636 scopus 로고    scopus 로고
    • Metaphors, models and bioinformation
    • Paton R. Metaphors, models and bioinformation. Biosystems 38 (1996) 155-162
    • (1996) Biosystems , vol.38 , pp. 155-162
    • Paton, R.1
  • 37
    • 0031023014 scopus 로고    scopus 로고
    • The organisations of hereditary information
    • Paton R. The organisations of hereditary information. Biosystems 40 (1997) 245-255
    • (1997) Biosystems , vol.40 , pp. 245-255
    • Paton, R.1
  • 38
    • 0036139190 scopus 로고    scopus 로고
    • Process, structure and context in relation to integrative biology
    • Paton R. Process, structure and context in relation to integrative biology. Biosystems 64 (2002) 63-72
    • (2002) Biosystems , vol.64 , pp. 63-72
    • Paton, R.1
  • 39
    • 0027272661 scopus 로고
    • Some computational models at the cellular level
    • Paton R.C. Some computational models at the cellular level. Biosystems 29 (1993) 63-75
    • (1993) Biosystems , vol.29 , pp. 63-75
    • Paton, R.C.1
  • 40
    • 0346156102 scopus 로고    scopus 로고
    • Detection of functional modules from protein interaction networks
    • Pereira-Leal J.B., Enright A.J., and Ouzounis C.A. Detection of functional modules from protein interaction networks. Proteins 54 (2004) 49-57
    • (2004) Proteins , vol.54 , pp. 49-57
    • Pereira-Leal, J.B.1    Enright, A.J.2    Ouzounis, C.A.3
  • 41
    • 0035141885 scopus 로고    scopus 로고
    • Biofantasies: genetics and medicine in the print news media
    • Petersen A. Biofantasies: genetics and medicine in the print news media. Soc. Sci. Med. 52 (2001) 1255-1268
    • (2001) Soc. Sci. Med. , vol.52 , pp. 1255-1268
    • Petersen, A.1
  • 42
    • 0034993056 scopus 로고    scopus 로고
    • The Rosetta stone
    • (comment1007)
    • Petsko G.A. The Rosetta stone. Genome Biol. 2 (2001) (comment1007)
    • (2001) Genome Biol. , vol.2
    • Petsko, G.A.1
  • 43
    • 0031742286 scopus 로고    scopus 로고
    • Zomit: biological data visualization and browsing
    • Pook S., Vaysseix G., and Barillot E. Zomit: biological data visualization and browsing. Bioinformatics 14 (1998) 807-814
    • (1998) Bioinformatics , vol.14 , pp. 807-814
    • Pook, S.1    Vaysseix, G.2    Barillot, E.3
  • 44
    • 0038161217 scopus 로고    scopus 로고
    • The role of phenotypic plasticity in driving genetic evolution
    • Price T.D., Qvarnstrom A., and Irwin D.E. The role of phenotypic plasticity in driving genetic evolution. Proc. Biol. Sci. 270 (2003) 1433-1440
    • (2003) Proc. Biol. Sci. , vol.270 , pp. 1433-1440
    • Price, T.D.1    Qvarnstrom, A.2    Irwin, D.E.3
  • 45
    • 0032719352 scopus 로고    scopus 로고
    • Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins
    • Rigoutsos I., Floratos A., Ouzounis C., Gao Y., and Parida L. Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins. Proteins 37 (1999) 264-277
    • (1999) Proteins , vol.37 , pp. 264-277
    • Rigoutsos, I.1    Floratos, A.2    Ouzounis, C.3    Gao, Y.4    Parida, L.5
  • 46
    • 0141888021 scopus 로고    scopus 로고
    • Lessons from life. The biology of business transformation
    • Rose J.S. Lessons from life. The biology of business transformation. Physician Exec. 27 (2001) 52-61
    • (2001) Physician Exec. , vol.27 , pp. 52-61
    • Rose, J.S.1
  • 47
    • 0037329735 scopus 로고    scopus 로고
    • Communication: from neurons to people; from present to future
    • Rose S.P. Communication: from neurons to people; from present to future. Biochem. Soc. Trans. 31 (2003) 159-161
    • (2003) Biochem. Soc. Trans. , vol.31 , pp. 159-161
    • Rose, S.P.1
  • 48
    • 0034518111 scopus 로고    scopus 로고
    • Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions
    • Ruths D.A., Chen E.S., and Ellis L. Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions. Bioinformatics 16 (2000) 1003-1009
    • (2000) Bioinformatics , vol.16 , pp. 1003-1009
    • Ruths, D.A.1    Chen, E.S.2    Ellis, L.3
  • 49
    • 0041317230 scopus 로고    scopus 로고
    • Collective specification of cellular development
    • Sachs T. Collective specification of cellular development. Bioessays 25 (2003) 897-903
    • (2003) Bioessays , vol.25 , pp. 897-903
    • Sachs, T.1
  • 50
    • 0035805118 scopus 로고    scopus 로고
    • A metaphor for the map
    • Schrader W.P. A metaphor for the map. Science 292 (2001) 856
    • (2001) Science , vol.292 , pp. 856
    • Schrader, W.P.1
  • 51
    • 0030821916 scopus 로고    scopus 로고
    • Linguistic approaches to biological sequences
    • Searls D.B. Linguistic approaches to biological sequences. Comput. Appl. Biosci. 13 (1997) 333-344
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 333-344
    • Searls, D.B.1
  • 53
    • 0035130288 scopus 로고    scopus 로고
    • The competent cell-the immune system as a metaphor, sign, language and culture
    • Spiess K. The competent cell-the immune system as a metaphor, sign, language and culture. Z. Psychosom. Med. Psychother. 47 (2001) 98-110
    • (2001) Z. Psychosom. Med. Psychother. , vol.47 , pp. 98-110
    • Spiess, K.1
  • 54
    • 16644400732 scopus 로고    scopus 로고
    • Systems biology: the big picture
    • Spivey A. Systems biology: the big picture. Environ. Health Perspect. 112 (2004) A938-A943
    • (2004) Environ. Health Perspect. , vol.112
    • Spivey, A.1
  • 55
    • 0023475753 scopus 로고
    • Darwin's Malthusian metaphor and Russian evolutionary thought
    • Todes D.P. Darwin's Malthusian metaphor and Russian evolutionary thought. Isis 78 (1859-1917) 537-551
    • (1859) Isis , vol.78 , pp. 537-551
    • Todes, D.P.1
  • 56
  • 58
    • 0034659945 scopus 로고    scopus 로고
    • Exploring genome space
    • Vukmirovic O.G., and Tilghman S.M. Exploring genome space. Nature 405 (2000) 820-822
    • (2000) Nature , vol.405 , pp. 820-822
    • Vukmirovic, O.G.1    Tilghman, S.M.2
  • 59
    • 0032802693 scopus 로고    scopus 로고
    • Organisms, organizations and interactions: an information theory approach to biocultural evolution
    • Wallace R., and Wallace R.G. Organisms, organizations and interactions: an information theory approach to biocultural evolution. Biosystems 51 (1999) 101-119
    • (1999) Biosystems , vol.51 , pp. 101-119
    • Wallace, R.1    Wallace, R.G.2
  • 60
    • 8844278305 scopus 로고    scopus 로고
    • Bacillus subtilis as cell factory for pharmaceutical proteins: a biotechnological approach to optimize the host organism
    • Westers L., Westers H., and Quax W.J. Bacillus subtilis as cell factory for pharmaceutical proteins: a biotechnological approach to optimize the host organism. Biochim. Biophys. Acta 1694 (2004) 299-310
    • (2004) Biochim. Biophys. Acta , vol.1694 , pp. 299-310
    • Westers, L.1    Westers, H.2    Quax, W.J.3
  • 61
    • 0031622685 scopus 로고    scopus 로고
    • A virtual laboratory notebook for simulation models
    • Winfield A.J. A virtual laboratory notebook for simulation models. Pac. Symp. Biocomput. (1998) 177-188
    • (1998) Pac. Symp. Biocomput. , pp. 177-188
    • Winfield, A.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.