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Volumn 31, Issue 15, 2003, Pages 4632-4638

Protein families and TRIBES in genome sequence space

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 0043163718     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg495     Document Type: Article
Times cited : (108)

References (29)
  • 2
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 3
    • 0019858614 scopus 로고
    • Similar amino acid sequences: Chance or common ancestry?
    • Doolittle,R.F. (1981) Similar amino acid sequences: chance or common ancestry? Science, 214, 149-159.
    • (1981) Science , vol.214 , pp. 149-159
    • Doolittle, R.F.1
  • 4
    • 0022706389 scopus 로고
    • The relationship between the divergence of sequence and structure in proteins
    • Chothia,C. and Lesk,A.M. (1986) The relationship between the divergence of sequence and structure in proteins. EMBO J., 5, 823-826.
    • (1986) EMBO J. , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 5
    • 0034308142 scopus 로고    scopus 로고
    • Practical limits of function prediction
    • Devos,D. and Valencia,A. (2000) Practical limits of function prediction. Proteins, 41, 98-107.
    • (2000) Proteins , vol.41 , pp. 98-107
    • Devos, D.1    Valencia, A.2
  • 7
    • 0037305939 scopus 로고    scopus 로고
    • Domains, motifs and clusters in the protein universe
    • Liu,J. and Rost,B. (2003) Domains, motifs and clusters in the protein universe. Curr. Opin. Chem. Biol., 7, 5-11.
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 5-11
    • Liu, J.1    Rost, B.2
  • 8
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright,A.J., Van Dongen,S. and Ouzounis,C.A. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575-1584.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 9
    • 0033944826 scopus 로고    scopus 로고
    • GeneRAGE: A robust algorithm for sequence clustering and domain detection
    • Enright,A.J. and Ouzounis,C.A. (2000) GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinformatics, 16, 451-457.
    • (2000) Bioinformatics , vol.16 , pp. 451-457
    • Enright, A.J.1    Ouzounis, C.A.2
  • 10
    • 0036087099 scopus 로고    scopus 로고
    • SYSTERS, GeneNest, SpliceNest: Exploring sequence space from genome to protein
    • Krause,A., Haas,S.A., Coward,E. and Vingron,M. (2002) SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. Nucleic Acids Res., 30, 299-300.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 299-300
    • Krause, A.1    Haas, S.A.2    Coward, E.3    Vingron, M.4
  • 13
    • 0033965852 scopus 로고    scopus 로고
    • ProtoMap: Automatic classification of protein sequences and hierarchy of protein families
    • Yona,G., Linial,N. and Linial,M. (2000) ProtoMap: automatic classification of protein sequences and hierarchy of protein families. Nucleic Acids Res., 28, 49-55.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 49-55
    • Yona, G.1    Linial, N.2    Linial, M.3
  • 15
    • 0038438514 scopus 로고    scopus 로고
    • IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
    • Schaffer,A.A., Wolf,Y.I., Ponting,C.P., Koonin,E.V., Aravind,L. and Altschul,S.F. (1999) IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics, 15, 1000-1011.
    • (1999) Bioinformatics , vol.15 , pp. 1000-1011
    • Schaffer, A.A.1    Wolf, Y.I.2    Ponting, C.P.3    Koonin, E.V.4    Aravind, L.5    Altschul, S.F.6
  • 16
    • 0005924596 scopus 로고    scopus 로고
    • Graph clustering by flow simulation
    • PhD thesis, Utrecht University, The Netherlands
    • Van Dongen,S. (2000) Graph clustering by flow simulation. PhD thesis, Utrecht University, The Netherlands.
    • (2000)
    • Van Dongen, S.1
  • 18
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 19
    • 0038589571 scopus 로고    scopus 로고
    • GeneTrace: Reconstruction of gene content of ancestral species
    • Kunin,V. and Ouzounis,C.A. (2003) GeneTrace: reconstruction of gene content of ancestral species. Bioinformatics, 31, 1412-1416.
    • (2003) Bioinformatics , vol.31 , pp. 1412-1416
    • Kunin, V.1    Ouzounis, C.A.2
  • 23
    • 0037953839 scopus 로고    scopus 로고
    • Computational analysis of protein function within complete genomes
    • PhD thesis, University of Cambridge
    • Enright,A.J. (2002) Computational analysis of protein function within complete genomes, PhD thesis, University of Cambridge.
    • (2002)
    • Enright, A.J.1
  • 26
    • 0032828663 scopus 로고    scopus 로고
    • Universal protein families and the functional content of the last universal common ancestor
    • Kyrpides,N., Overbeek,R. and Ouzounis,C. (1999) Universal protein families and the functional content of the last universal common ancestor. J. Mol. Evol., 49, 413-423.
    • (1999) J. Mol. Evol. , vol.49 , pp. 413-423
    • Kyrpides, N.1    Overbeek, R.2    Ouzounis, C.3
  • 27
    • 0036314772 scopus 로고    scopus 로고
    • Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
    • Harrison,P.M. and Gerstein,M. (2002) Studying genomes through the aeons: protein families, pseudogenes and proteome evolution. J. Mol. Biol., 318, 1155-1174.
    • (2002) J. Mol. Biol. , vol.318 , pp. 1155-1174
    • Harrison, P.M.1    Gerstein, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.