-
1
-
-
14744277777
-
Polyploidy and genome evolution in plants
-
Adams, K.L. and Wendel, J.F. 2005. Polyploidy and genome evolution in plants. Curr. Opin. Plant Biol. 8: 135-141.
-
(2005)
Curr. Opin. Plant Biol.
, vol.8
, pp. 135-141
-
-
Adams, K.L.1
Wendel, J.F.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
3
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweller, R., Attwood, T.K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M.D.R., et al. 2001. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29: 37-40.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 37-40
-
-
Apweller, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.R.10
-
4
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. The Gene Ontology Consortium. 2000. Gene Ontology: Tool for the unification of biology. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
5
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic, S. and Claverie, J.M. 1997. The significance of digital gene expression profiles. Genome Res. 7: 986-995.
-
(1997)
Genome Res.
, vol.7
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
6
-
-
0017617781
-
Albumin phylogeny for clawed frogs
-
Bisbee, C.A., Baker, M.A., Wilson, A.C., Irandokht, H.A., and Fischberg, M. 1977. Albumin phylogeny for clawed frogs. Science 195: 785-787.
-
(1977)
Science
, vol.195
, pp. 785-787
-
-
Bisbee, C.A.1
Baker, M.A.2
Wilson, A.C.3
Irandokht, H.A.4
Fischberg, M.5
-
7
-
-
0035804654
-
The NIEHS Xenopus maternal EST project: Interim analysis of the first 13,879 ESTs from unfertilized eggs
-
Blackshear, P.J., Lai, W.S., Thorn, J.M., Kennington, E.A., Staffa, N.G., Moore, D.T., Bouffard, G.G., Beckstrom-Sterberg, S.M., Touchman, J.W., de Fatima Bonaldo, M., et al. 2001. The NIEHS Xenopus maternal EST project: Interim analysis of the first 13,879 ESTs from unfertilized eggs. Gene 267: 71-87.
-
(2001)
Gene
, vol.267
, pp. 71-87
-
-
Blackshear, P.J.1
Lai, W.S.2
Thorn, J.M.3
Kennington, E.A.4
Staffa, N.G.5
Moore, D.T.6
Bouffard, G.G.7
Beckstrom-Sterberg, S.M.8
Touchman, J.W.9
De Fatima Bonaldo, M.10
-
8
-
-
0036606408
-
An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones
-
Butterfield, Y.S., Marra, M.A., Asano, J.K., Chan, S.Y., Guin, R., Krzywinski, M.I., Lee, S.S., MacDonald, K.W., Mathewson, C.A., Olson, T.E., et al. 2002. An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones. Nucleic Acids Res. 30: 2460-2468.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2460-2468
-
-
Butterfield, Y.S.1
Marra, M.A.2
Asano, J.K.3
Chan, S.Y.4
Guin, R.5
Krzywinski, M.I.6
Lee, S.S.7
MacDonald, K.W.8
Mathewson, C.A.9
Olson, T.E.10
-
9
-
-
0025286650
-
Phylogenetic relationships of the pipid frogs Xenopus and Silurana: An integration of ribosomal DNA morphology
-
De Sa, R.O. and Hillis, D.M. 1990. Phylogenetic relationships of the pipid frogs Xenopus and Silurana: An integration of ribosomal DNA morphology. Mol. Biol. Evol. 7: 365-376.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 365-376
-
-
De Sa, R.O.1
Hillis, D.M.2
-
10
-
-
4344713315
-
A mitochondrial DNA phylogeny of African clawed frogs: Phylogeography and implications for polyploid evolution
-
Evans, B.J., Kelley, D.B., Tinsley, R.C., Melnick, D.J., and Cannatella, D.C. 2004. A mitochondrial DNA phylogeny of African clawed frogs: Phylogeography and implications for polyploid evolution. Mol. Phylogenet. Evol. 33: 197-213.
-
(2004)
Mol. Phylogenet. Evol.
, vol.33
, pp. 197-213
-
-
Evans, B.J.1
Kelley, D.B.2
Tinsley, R.C.3
Melnick, D.J.4
Cannatella, D.C.5
-
11
-
-
0031978181
-
Base-calling of automated sequencer traces using Phred. II. Error probabilities
-
Ewing, B. and Green, P. 1998. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8: 186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
12
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y., and Postlethwait, J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.5
Postlethwait, J.6
-
13
-
-
7444262496
-
The status, quality, and expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
-
Gerhard, D.S., Wagner, L., Feingold, E.A., Shenmen, C.M., Grouse, L.H., Schuler, G., Klein, S.L., Old, S., Rasooly, R., Good, P., et al. 2004. The status, quality, and expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC). Genome Res. 14: 2121-2127.
-
(2004)
Genome Res.
, vol.14
, pp. 2121-2127
-
-
Gerhard, D.S.1
Wagner, L.2
Feingold, E.A.3
Shenmen, C.M.4
Grouse, L.H.5
Schuler, G.6
Klein, S.L.7
Old, S.8
Rasooly, R.9
Good, P.10
-
14
-
-
3042540826
-
Defining a large set of full-length clones from a Xenopus tropicalis EST project
-
Gilchrist, M.J., Zorn, A.M., Voigt, J., Smith, J.C., Papalopulu, N., and Amaya, E. 2004. Defining a large set of full-length clones from a Xenopus tropicalis EST project. Dev. Biol. 271: 498-516.
-
(2004)
Dev. Biol.
, vol.271
, pp. 498-516
-
-
Gilchrist, M.J.1
Zorn, A.M.2
Voigt, J.3
Smith, J.C.4
Papalopulu, N.5
Amaya, E.6
-
15
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C., and Green, P. 1998. Consed: A graphical tool for sequence finishing. Genome Res. 8: 195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
16
-
-
0026272190
-
Genetics of Xenopus laevis
-
Graf, J. and Kobel, H. 1991. Genetics of Xenopus laevis. Methods Cell Biol. 36: 663-669.
-
(1991)
Methods Cell Biol.
, vol.36
, pp. 663-669
-
-
Graf, J.1
Kobel, H.2
-
17
-
-
0036895152
-
Xenopus, the next generation: X. tropicalis genetics and genomics
-
Hirsch, N., Zimmerman, L., and Grainger, R. 2002. Xenopus, the next generation: X. tropicalis genetics and genomics. Dev. Dyn. 225: 422-433.
-
(2002)
Dev. Dyn.
, vol.225
, pp. 422-433
-
-
Hirsch, N.1
Zimmerman, L.2
Grainger, R.3
-
18
-
-
0027423610
-
Evolution of duplicate genes in a tetraploid animal, Xenopus laevis
-
Hughes, M.K. and Hughes, A.L. 1993. Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol. Biol. Evol. 10: 1360-1369.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1360-1369
-
-
Hughes, M.K.1
Hughes, A.L.2
-
19
-
-
0034724185
-
Adaptive diversification within a large family of recently duplicated, placentally expressed genes
-
Hughes, M.K., Green, J.A., Garbayo, J.M., and Roberts, R.M. 2000. Adaptive diversification within a large family of recently duplicated, placentally expressed genes. Proc. Natl. Acad. Sci. 97: 3319-3323.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 3319-3323
-
-
Hughes, M.K.1
Green, J.A.2
Garbayo, J.M.3
Roberts, R.M.4
-
20
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King, M.C. and Wilson, A.C. 1975. Evolution at two levels in humans and chimpanzees. Science 188: 107-116.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
21
-
-
0036896487
-
Genetic and genomic tools for Xenopus research: The NIH Xenopus Initiative
-
Klein, S.L., Strausberg, R.L., Wagner, L., Pontius, J., Clifton, S.W., and Richardson, P. 2002. Genetic and genomic tools for Xenopus research: The NIH Xenopus Initiative. Dev. Dyn. 225: 384-391.
-
(2002)
Dev. Dyn.
, vol.225
, pp. 384-391
-
-
Klein, S.L.1
Strausberg, R.L.2
Wagner, L.3
Pontius, J.4
Clifton, S.W.5
Richardson, P.6
-
22
-
-
0001841350
-
Allopolyploid speciation
-
eds. R.C. Tinsley and H.R. Kobel, Clarendon Press, Oxford
-
Kobel, H.R. 1996. Allopolyploid speciation. In The biology of Xenopus (eds. R.C. Tinsley and H.R. Kobel), pp. 391-401. Clarendon Press, Oxford.
-
(1996)
The Biology of Xenopus
, pp. 391-401
-
-
Kobel, H.R.1
-
23
-
-
17244368487
-
Modeling gene and genome duplication in eukaryotes
-
Maere, S., De Bodt, S., Raes, J., Casneuf, T., Van Montagu, M., Kuiper, M., and Van de Peer, Y. 2005. Modeling gene and genome duplication in eukaryotes. Proc. Natl. Acad. Sci. 102: 5454-5459.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 5454-5459
-
-
Maere, S.1
De Bodt, S.2
Raes, J.3
Casneuf, T.4
Van Montagu, M.5
Kuiper, M.6
Van De Peer, Y.7
-
25
-
-
3042855210
-
UniGene: A unified view of the transcriptome
-
National Center for Biotechnology Information, Bethesda, MD
-
Pontius, J.U., Wagner, L., and Schuler, G.D. 2003. UniGene: A unified view of the transcriptome. In The NCBI Handbook, pp. 857-868. National Center for Biotechnology Information, Bethesda, MD.
-
(2003)
The NCBI Handbook
, pp. 857-868
-
-
Pontius, J.U.1
Wagner, L.2
Schuler, G.D.3
-
26
-
-
0037168586
-
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
-
Strausberg, R.L., Feingold, E.A., Grouse, L.H., Derge, J.G., Klausner, R.D., Collins, F.S., Wagner, L., Shenmen, C.M., Schuler, G.D., and Altschul, S.F. 2002. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl. Acad. Sci. 99: 16899-16903.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 16899-16903
-
-
Strausberg, R.L.1
Feingold, E.A.2
Grouse, L.H.3
Derge, J.G.4
Klausner, R.D.5
Collins, F.S.6
Wagner, L.7
Shenmen, C.M.8
Schuler, G.D.9
Altschul, S.F.10
-
27
-
-
0036169031
-
Genesis: Cluster analysis of microarray data
-
Sturn, A., Quackenbush, J., and Trajanoski, Z. 2002. Genesis: Cluster analysis of microarray data. Bioinformatics 18: 207-208.
-
(2002)
Bioinformatics
, vol.18
, pp. 207-208
-
-
Sturn, A.1
Quackenbush, J.2
Trajanoski, Z.3
-
28
-
-
0035968908
-
Comparative genomics provides evidence for an ancient genome duplication event in fish
-
Taylor, J.S., Van de Peer, Y., Braasch, I., and Myer, A. 2001. Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos. Trans. R. Soc. Lond. B Biol. Sci. 356: 1661-1679.
-
(2001)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.356
, pp. 1661-1679
-
-
Taylor, J.S.1
Van De Peer, Y.2
Braasch, I.3
Myer, A.4
-
29
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
0036272537
-
Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome
-
Thornton, K. and Long, M. 2002. Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome. Mol. Biol. Evol. 19: 918-925.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 918-925
-
-
Thornton, K.1
Long, M.2
-
31
-
-
0043123111
-
RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
-
Wernersson, R. and Pedersen, A.G. 2003. RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31: 3537-3539.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3537-3539
-
-
Wernersson, R.1
Pedersen, A.G.2
-
32
-
-
0000465745
-
Fluorescence-based DNA sequencing
-
eds. B. Birren et al., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Wilson, R.K. and Mardis, E.R. 1997. Fluorescence-based DNA sequencing. In Genome analysis: A laboratory manual: Analyzing DNA (eds. B. Birren et al.), Vol. 1, pp. 301-395. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
Genome Analysis: A Laboratory Manual: Analyzing DNA
, vol.1
, pp. 301-395
-
-
Wilson, R.K.1
Mardis, E.R.2
-
33
-
-
0030683599
-
PAML, a program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML, a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
34
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
_. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15: 568-573.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 568-573
-
-
-
35
-
-
25444481087
-
High-throughput sequencing: A failure mode analysis
-
Yang, G., Stott, J.M., Smailus, D.M., Barber, S.A., Balasundaram, M., Marra, M.A., and Holt, R.A. 2005. High-throughput sequencing: A failure mode analysis. BMC Genomics 6: 2.
-
(2005)
BMC Genomics
, vol.6
, pp. 2
-
-
Yang, G.1
Stott, J.M.2
Smailus, D.M.3
Barber, S.A.4
Balasundaram, M.5
Marra, M.A.6
Holt, R.A.7
-
36
-
-
23044478689
-
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
-
Zeeberg, B.R., Qin, H., Narasimhan, S., Sunshine, M., Cao, H., Kane, D.W., Reimers, M., Stephens, R.M., Bryant, D., Burt, S.K., et al. 2005. High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID). BMC Bioinformatics 6: 168.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 168
-
-
Zeeberg, B.R.1
Qin, H.2
Narasimhan, S.3
Sunshine, M.4
Cao, H.5
Kane, D.W.6
Reimers, M.7
Stephens, R.M.8
Bryant, D.9
Burt, S.K.10
-
37
-
-
0036726239
-
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana
-
Zhang, L., Vision, T., and Gaut, B. 2002. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol. Biol. Evol. 19: 1464-1473.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1464-1473
-
-
Zhang, L.1
Vision, T.2
Gaut, B.3
|