Stereochemical analysis of the functional significance of the conserved inverted CCAAT and TATA elements in the rat bone sialoprotein gene promoter

Journal of Biological Chemistry

Volumn 281, Issue 15, 2006, Pages 9882-9890

  Su, Ming ^a   Lee, Daniel ^a   Ganss, Bernhard ^a   Sodek, Jaro ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; DNA; GENES; MOLECULAR ORIENTATION; PROTEINS; STEREOCHEMISTRY;

BASAL TRANSCRIPTION; NUCLEOTIDES; SIMULTANEOUS INVERSION OF FLANKING NUCLEOTIDES (F-RICE-F); TRANSIENT TRANSFECTION ASSAYS;

BIOCHEMISTRY;

CCAAT BINDING FACTOR; DNA BINDING PROTEIN; PROTEIN NF Y; SIALOPROTEIN; UNCLASSIFIED DRUG; BONE SIALOPROTEIN; LUCIFERASE; NUCLEOTIDE; RECOMBINANT PROTEIN; SIALOGLYCOPROTEIN;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DNA FLANKING REGION; DNA HELIX; DNA STRUCTURE; GEL MOBILITY SHIFT ASSAY; GENE DELETION; GENE LOCATION; GENE MUTATION; GENE STRUCTURE; GENETIC TRANSCRIPTION; GENETIC TRANSFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; RAT; REPORTER GENE; STEREOCHEMISTRY; TATA BOX; ANIMAL; CELL NUCLEUS; CHEMISTRY; CHROMATIN IMMUNOPRECIPITATION; GENETICS; HELA CELL; HUMAN; METABOLISM; MOLECULAR GENETICS; MUTATION; PROTEIN BINDING; STATISTICAL MODEL; STEREOISOMERISM; TUMOR CELL LINE;

ANIMALS; BASE SEQUENCE; CCAAT-BINDING FACTOR; CELL LINE, TUMOR; CELL NUCLEUS; CHROMATIN IMMUNOPRECIPITATION; CONSERVED SEQUENCE; GENES, REPORTER; HELA CELLS; HUMANS; LUCIFERASES; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEOTIDES; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; RATS; RECOMBINANT PROTEINS; SIALOGLYCOPROTEINS; STEREOISOMERISM; TRANSCRIPTION, GENETIC; TRANSFECTION;

EID: 33744546893     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M508364200     Document Type: Article

References (54)

1. Pugh, B. F. (1996) Curr. Opin. Cell Biol. 8, 303-311
2. Roeder, R. G. (2005) FEBS Lett. 579, 909-915
3. Patikoglou, G. A., Kim, J. L., Sun, L., Yang, S.-H., Kodadek, T., and Burley, S. K. (1999) Genes Dev. 13, 3217-3230
4. Nikolov, D. B., and Burley, S. K. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 15-22
5. Burley, S. K., and Roeder, R. G. (1996) Annu. Rev. Biochem. 65, 769-799
6. Tan, S., and Richmond, T. J. (1998) Curr. Opin. Struct. Biol. 8, 41-48
7. Burley, S. K., and Kamada, K. (2002) Curr. Opin. Struct. Biol. 12, 225-230
8. Xu, L. C., Thali, M., and Schaffner, W. (1991) Nucleic Acids Res. 19, 6699-6704
9. Romier, C., Cocchiarella, F., Mantovani, R., and Moras, D. (2003) J. Biol. Chem. 278, 1336-1345
10. Mantovani, R. (1999) Gene (Amst.) 239, 15-27
11. Maity, S. N., and Crombrugghe, B. D. (1998) Trends Biochem. Sci. 23, 174-178
12. Mantovani, R. (1998) Nucleic Acids Res. 26, 1135-1143
13. Bellorini, M., Lee, D. K., Dantonel, J. C., Zemzoumi, K., Roeder, R. G., Tora, L., and Mantovani, R. (1997) Nucleic Acids Res. 25, 2174-2181
14. Motta, M. C., Caretti, G., Badaracco, G. F., and Mantovani, R. (1999) J. Biol. Chem. 274, 1326-1333
15. Silvio, A. D., Imbriano, C., and Mantovani, R. (1999) Nucleic Acids Res. 27, 2578-2584
16. Frontini, M., Imbriano, C., diSilvio, A., Bell, B., Bogni, A., Romier, C., Moras, D., Tora, L., Davidson, I., and Mantovani, R. (2002) J. Biol. Chem. 277, 5841-5848
17. Fisher, L. W., and Fedarko, N. S. (2003) Connect Tissue Res. 44, (Suppl. 1) 33-40
18. Ganss, B., Kim, R. H., and Sodek, J. (1999) Crit. Rev. Oral Biol. Med. 10, 79-98
19. Kim, R., Shapiro, H., Li, J. J., Wrana, J., and Sodek, J. (1994) Matrix Biol. 14, 31-40
20. Li, J. J., Kim, R. H., and Sodek, J. (1995) Biochem. J. 310, 33-40
21. Li, J. J., and Sodek, J. (1993) Biochem. J. 289, 625-629
22. Sodek, J., Li, J. J., Kim, R. H., Ogata, Y., and Yamauchi, M. (1996) Connect. Tissue Res. 35, 23-31
23. Mantovani, R., Pessara, U., Tronche, F., Li, X. Y., Knapp, A. M., Pasquali, J. L., Benoist, C., and Mathis, D. (1992) EMBO J. 11, 3315-3322
24. Kim, R. H., and Sodek, J. (1999) Cancer Res. 59, 565-571
25. Mao, D. Y., Barsyte-Lovejoy, D., Ho, C. S., Watson, J. D., Stojanova, A., and Penn, L. Z. (2004) Nucleic Acids Res. 32, 3462-3468
26. Su, M., Bansal, A. K., Mantovani, R., and Sodek, J. (2005) J. Biol. Chem. 280, 38365-38375
27. Carcamo, J., Maldonado, E., Cortes, P., Ahn, M. H., Ha, I., Kasai, Y., Flint, J., and Reinberg, D. (1990) Genes Dev. 4, 1611-1622
28. Kim, R., Li, J., Ogata, Y., Yamauchi, M., Freedman, L., and Sodek, J. (1996) Biochem. J. 318, 219-226
29. O'Shea-Greenfield, A., and Smale, S. T. (1992) J. Biol. Chem. 267, 6450
30. O'Shea-Greenfield, A., and Smale, S. T. (1992) J. Biol. Chem. 267, 1391-1402
31. Spencer, J. V., and Arndt, K. M. (2002) Mol. Cell. Biol. 22, 8744-8755
32. Kim, J. L., Nikolov, D. B., and Burley, S. K. (1993) Nature 365, 520-527
33. Kim, Y., Geiger, J. H., Hahn, S., and Sigler, P. B. (1993) Nature 365, 512-520
34. Suzuki, M., Allen, M. D., Yagi, N., and Finch, J. T. (1996) Nucleic Acids Res. 24, 2767-2773
35. Juo, Z. S., Chiu, T. K., Leiberman, P. M., Baikalov, I., Berk, A. J., and Dickerson, R. E. (1996) J. Mol. Biol. 261, 239-254
36. Cox, J. M., Hayward, M. M., Sanchez, J. F., Gegnas, L. D., van der Zee, S., Dennis, J. H., Sigler, P. B., and Schepartz, A. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 13475-13480
37. Miaskiewicz, K., and Ornstein, R. L. (1996) J. Biomol. Struct. Dyn. 13, 593-600
38. Kim, J. L., and Burley, S. K. (1994) Nat. Struct. Biol. 1, 638-653
39. Geiger, J. H., Hahn, S., Lee, S., and Sigler, P. B. (1996) Science 272, 830-836
40. Kays, A. R., and Schepartz, A. (2000) Chem. Biol. 7, 601-610
41. Tamura, T., Sumita, K., Fujino, I., Aoyama, A., Horikoshi, M., Hoffmann, A., Roeder, R. G., Muramatsu, M., and Mikoshiba, K. (1991) Nucleic Acids Res. 19, 3861-3865
42. Duan, Z., Stamatoyannopoulos, G., and Li, Q. (2001) Mol. Cell. Biol. 21, 3083-3095
43. Kabe, Y., Yamada, J., Uga, H., Yamaguchi, Y., Wada, T., and Handa, H. (2005) Mol. Cell. Biol. 25, 512-522
44. Bellorini, M., Zemzoumi, K., Farina, A., Berthelsen, J., Piaggio, G., and Mantovani, R. (1997) Gene (Amst.) 193, 119-125
45. Kamada, K., Shu, F., Chen, H., Malik, S., Stelzer, G., Roeder, R. G., Meisterernst, M., and Burley, S. K. (2001) Cell 106, 71-81
46. Bucher, P. (1990) J. Mol. Biol. 212, 563-578
47. Bi, W., Wu, L., Coustry, F., Crombrugghe, B. d., and Maity, S. N. (1997) J. Biol. Chem. 272, 26562-26572
48. Liang, S. G., and Maity, S. N. (1998) J. Biol. Chem. 273, 31590-31598
49. Yu, M., Yang, X. Y., Schmidt, T., Chinenov, Y., Wang, R., and Martin, M. E. (1997) J. Biol. Chem. 272, 29060-29067
50. Ushida, C., and Aiba, H. (1990) Nucleic Acids Res. 18, 6325-6330
51. Lewis, D. E., and Adhya, S. (2002) J. Biol. Chem. 277, 2498-2504
52. Dion, V., and Coulombe, B. (2003) J. Biol. Chem. 278, 11495-11501
53. Liberati, C., Sgarra, R., Manfioletti, G., and Mantovani, R. (1998) FEBS Lett. 433, 174-178
54. Ronchi, A., Bellorini, M., Mongelli, N., and Mantovani, R. (1995) Nucleic Acids Res. 23, 4565-4572